Gene annotation
Transcriptome id Sobic.006G036900.1
Synonym Sb06g005410, SAG12
Functional annotation vignain precursor, putative, expressed
UniProt C5YDQ2
Pfam PF08246 PF00112
Panther DB PTHR12411 PTHR12411:SF348
NCBI CDD KOG1543; Cysteine proteinase Cathepsin L
KEGG Orthology -
Gene Ontology GO:0008234; cysteine-type peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT5G45890 : senescence-associated gene 12
RAP-DB (Rice) LOC_Os04g13090.1 : vignain precursor, putative, expressed
MaizeGDB (Corn) -
Brachypodium PNT65238 , KQJ91931 , KQJ91933
Barley HORVU4Hr1G006280.1 , HORVU4Hr1G006280.2 , HORVU2Hr1G023960.1 , HORVU1Hr1G060040.5 , HORVU1Hr1G060040.6 , HORVU1Hr1G060040.1 , HORVU1Hr1G060040.3 , HORVU1Hr1G060040.2
Wheat TraesCS4B02G039600 , TraesCS4A02G274100 , TraesCS4B02G039500 , TraesCS4A02G274000 , TraesCS4B02G039900 , TraesCS4D02G036600 , TraesCS4A02G273800 , TraesCS4D02G037300 , TraesCS5B02G523100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G050200 Strongly up-regulated in leaf samples inoculated with S. reilianum f. sp. zeae but not S. reilianum f. sp. reilianum(PubMedID : 22670753)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@function as typical DFRs by accepting dihydroflavonol substrates(PubMedID : 20529887)@dihydroflavonol-4-reductase, putative, expressed K13082: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase
2 Sobic.004G230600 - -
3 Sobic.004G113300 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
4 Sobic.002G190500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@alpha-amylase precursor, putative, expressed K01176: AMY, amyA, alpha-amylase
5 Sobic.001G182500 GDSL-like lipase/acylhydrolase, putative, expressed -
6 Sobic.002G217133 - K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
7 Sobic.002G217133 - K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
8 Sobic.002G217133 - K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
9 Sobic.005G130400 terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
10 Sobic.002G324000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@isocitrate lyase, putative, expressed K01637: E4.1.3.1, isocitrate lyase
11 Sobic.008G060700 receptor-like protein kinase 5 precursor, putative, expressed -
12 Sobic.001G274800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
13 Sobic.003G366400 uricase, putative, expressed K00365: urate oxidase
14 Sobic.007G219900 uncharacterized glycosyltransferase, putative, expressed K06617: raffinose synthase
15 Sobic.001G491800 expressed protein -
16 Sobic.010G135900 - -
17 Sobic.006G127100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@malate synthase, glyoxysomal, putative, expressed K01638: aceB, malate synthase
18 Sobic.004G060900 STRUBBELIG-RECEPTOR FAMILY 3 precursor, putative, expressed -
19 Sobic.003G184900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@esterase, putative, expressed -
20 Sobic.004G345800 Peroxisomal 3-ketoacyl-CoA thiolase 3 PKT3 (At)(PubMedID : 27208977)@3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1


Gene co-expression network
sample Sobic006G036900 Sobic006G036900 Sobic004G050200 Sobic004G050200 Sobic006G036900--Sobic004G050200 Sobic004G230600 Sobic004G230600 Sobic006G036900--Sobic004G230600 Sobic004G113300 Sobic004G113300 Sobic006G036900--Sobic004G113300 Sobic002G190500 Sobic002G190500 Sobic006G036900--Sobic002G190500 Sobic001G182500 Sobic001G182500 Sobic006G036900--Sobic001G182500 Sobic002G217133 Sobic002G217133 Sobic006G036900--Sobic002G217133 Sobic005G130400 Sobic005G130400 Sobic006G036900--Sobic005G130400 Sobic004G050200--Sobic004G113300 Sobic004G050200--Sobic001G182500 Sobic003G184900 Sobic003G184900 Sobic004G050200--Sobic003G184900 Sobic004G050200--Sobic006G036900 Sobic002G324000 Sobic002G324000 Sobic004G050200--Sobic002G324000 Sobic004G050200--Sobic002G190500 Sobic001G491800 Sobic001G491800 Sobic004G050200--Sobic001G491800 Sobic001G274800 Sobic001G274800 Sobic004G050200--Sobic001G274800 Sobic008G079300 Sobic008G079300 Sobic004G050200--Sobic008G079300 Sobic004G230600--Sobic006G036900 Sobic004G230600--Sobic004G050200 Sobic007G213925 Sobic007G213925 Sobic004G230600--Sobic007G213925 Sobic004G230600--Sobic002G190500 Sobic004G230600--Sobic001G182500 Sobic008G060700 Sobic008G060700 Sobic004G230600--Sobic008G060700 Sobic004G230600--Sobic002G217133 Sobic004G113300--Sobic002G324000 Sobic004G113300--Sobic002G190500 Sobic004G113300--Sobic004G050200 Sobic004G113300--Sobic003G184900 Sobic004G113300--Sobic008G079300 Sobic004G113300--Sobic005G130400 Sobic004G113300--Sobic001G274800 Sobic003G105800 Sobic003G105800 Sobic004G113300--Sobic003G105800 Sobic004G060900 Sobic004G060900 Sobic004G113300--Sobic004G060900 Sobic002G190500--Sobic002G324000 Sobic002G190500--Sobic004G113300 Sobic002G190500--Sobic005G130400 Sobic002G190500--Sobic004G050200 Sobic002G190500--Sobic003G184900 Sobic004G345800 Sobic004G345800 Sobic002G190500--Sobic004G345800 Sobic004G321800 Sobic004G321800 Sobic002G190500--Sobic004G321800 Sobic007G216201 Sobic007G216201 Sobic002G190500--Sobic007G216201 Sobic002G190500--Sobic008G079300 Sobic001G182500--Sobic003G184900 Sobic006G100332 Sobic006G100332 Sobic001G182500--Sobic006G100332 Sobic004G260000 Sobic004G260000 Sobic001G182500--Sobic004G260000 Sobic001G182500--Sobic004G050200 Sobic009G054500 Sobic009G054500 Sobic001G182500--Sobic009G054500 Sobic003G010600 Sobic003G010600 Sobic001G182500--Sobic003G010600 Sobic001G182500--Sobic001G491800 Sobic009G226300 Sobic009G226300 Sobic001G182500--Sobic009G226300 Sobic007G219900 Sobic007G219900 Sobic001G182500--Sobic007G219900 Sobic002G217133--Sobic002G217133 Sobic002G217133--Sobic005G130400 Sobic002G217133--Sobic006G036900 Sobic010G024700 Sobic010G024700 Sobic002G217133--Sobic010G024700 Sobic002G217133--Sobic004G113300 Sobic002G217133--Sobic002G190500 Sobic005G196200 Sobic005G196200 Sobic002G217133--Sobic005G196200 Sobic002G217133--Sobic004G050200 Sobic005G130400--Sobic002G324000 Sobic005G130400--Sobic002G190500 Sobic005G130400--Sobic004G113300 Sobic005G130400--Sobic004G050200 Sobic005G130400--Sobic002G217133 Sobic005G130400--Sobic006G036900 Sobic008G028800 Sobic008G028800 Sobic005G130400--Sobic008G028800
Octagon: transcription factors


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