Gene annotation
Transcriptome id Sobic.004G113300.1
Synonym ATCNGC1, CNGC1
Functional annotation cyclic nucleotide-gated ion channel 1, putative, expressed
UniProt A0A194YNZ6
Pfam PF00027 PF00520
Panther DB PTHR10217 PTHR10217:SF524
NCBI CDD -
KEGG Orthology K05391; cyclic nucleotide gated channel, plant
Gene Ontology GO:0016020; membrane GO:0006811ion transport GO:0005216ion channel activity


Orthologs (automatic annotation)
TAIR AT5G53130 : cyclic nucleotide gated channel 1
RAP-DB (Rice) LOC_Os06g33570.1 : cyclic nucleotide-gated ion channel 1, putative, expressed
MaizeGDB (Corn) Zm00025a034433 , Zm00025a034432 , Zm00025a034430
Brachypodium KQK18088 , KQK18089 , KQK18084 , KQK18085 , KQK18086 , KQK18087 , PNT75827 , PNT75828 , PNT75829 , PNT75830
Barley HORVU7Hr1G079400.3 , HORVU7Hr1G079400.5 , HORVU7Hr1G079400.4 , HORVU7Hr1G079400.7 , HORVU7Hr1G079400.6 , HORVU7Hr1G079410.2 , HORVU7Hr1G079410.3 , HORVU7Hr1G079410.1
Wheat TraesCS6D02G181100 , TraesCS6A02G196800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G324000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@isocitrate lyase, putative, expressed K01637: E4.1.3.1, isocitrate lyase
2 Sobic.002G190500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@alpha-amylase precursor, putative, expressed K01176: AMY, amyA, alpha-amylase
3 Sobic.004G050200 Strongly up-regulated in leaf samples inoculated with S. reilianum f. sp. zeae but not S. reilianum f. sp. reilianum(PubMedID : 22670753)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@function as typical DFRs by accepting dihydroflavonol substrates(PubMedID : 20529887)@dihydroflavonol-4-reductase, putative, expressed K13082: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase
4 Sobic.003G184900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@esterase, putative, expressed -
5 Sobic.008G079300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
6 Sobic.005G130400 terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
7 Sobic.001G274800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
8 Sobic.003G105800 No apical meristem protein, putative, expressed -
9 Sobic.004G060900 STRUBBELIG-RECEPTOR FAMILY 3 precursor, putative, expressed -
10 Sobic.004G345800 Peroxisomal 3-ketoacyl-CoA thiolase 3 PKT3 (At)(PubMedID : 27208977)@3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
11 Sobic.007G225900 OsWAK13 - OsWAK receptor-like protein kinase, expressed -
12 Sobic.006G127100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@malate synthase, glyoxysomal, putative, expressed K01638: aceB, malate synthase
13 Sobic.001G182500 GDSL-like lipase/acylhydrolase, putative, expressed -
14 Sobic.006G036900 vignain precursor, putative, expressed -
15 Sobic.004G321800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@saccharopine dehydrogenase, putative, expressed K14157: alpha-aminoadipic semialdehyde synthase
16 Sobic.007G216201 - -
17 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
18 Sobic.001G491800 expressed protein -
19 Sobic.006G100332 - -
20 Sobic.009G226600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@wax synthase, putative, expressed -


Gene co-expression network
sample Sobic004G113300 Sobic004G113300 Sobic002G324000 Sobic002G324000 Sobic004G113300--Sobic002G324000 Sobic002G190500 Sobic002G190500 Sobic004G113300--Sobic002G190500 Sobic004G050200 Sobic004G050200 Sobic004G113300--Sobic004G050200 Sobic003G184900 Sobic003G184900 Sobic004G113300--Sobic003G184900 Sobic008G079300 Sobic008G079300 Sobic004G113300--Sobic008G079300 Sobic005G130400 Sobic005G130400 Sobic004G113300--Sobic005G130400 Sobic001G274800 Sobic001G274800 Sobic004G113300--Sobic001G274800 Sobic003G105800 Sobic003G105800 Sobic004G113300--Sobic003G105800 Sobic004G060900 Sobic004G060900 Sobic004G113300--Sobic004G060900 Sobic002G324000--Sobic002G190500 Sobic002G324000--Sobic004G113300 Sobic002G324000--Sobic003G184900 Sobic002G324000--Sobic005G130400 Sobic004G321800 Sobic004G321800 Sobic002G324000--Sobic004G321800 Sobic002G324000--Sobic004G050200 Sobic002G324000--Sobic001G274800 Sobic008G182700 Sobic008G182700 Sobic002G324000--Sobic008G182700 Sobic002G324000--Sobic004G060900 Sobic002G190500--Sobic002G324000 Sobic002G190500--Sobic004G113300 Sobic002G190500--Sobic005G130400 Sobic002G190500--Sobic004G050200 Sobic002G190500--Sobic003G184900 Sobic004G345800 Sobic004G345800 Sobic002G190500--Sobic004G345800 Sobic002G190500--Sobic004G321800 Sobic007G216201 Sobic007G216201 Sobic002G190500--Sobic007G216201 Sobic002G190500--Sobic008G079300 Sobic004G050200--Sobic004G113300 Sobic001G182500 Sobic001G182500 Sobic004G050200--Sobic001G182500 Sobic004G050200--Sobic003G184900 Sobic006G036900 Sobic006G036900 Sobic004G050200--Sobic006G036900 Sobic004G050200--Sobic002G324000 Sobic004G050200--Sobic002G190500 Sobic001G491800 Sobic001G491800 Sobic004G050200--Sobic001G491800 Sobic004G050200--Sobic001G274800 Sobic004G050200--Sobic008G079300 Sobic003G184900--Sobic003G105800 Sobic003G184900--Sobic008G079300 Sobic003G184900--Sobic004G321800 Sobic006G100332 Sobic006G100332 Sobic003G184900--Sobic006G100332 Sobic007G225900 Sobic007G225900 Sobic003G184900--Sobic007G225900 Sobic003G184900--Sobic002G324000 Sobic003G087200 Sobic003G087200 Sobic003G184900--Sobic003G087200 Sobic005G178100 Sobic005G178100 Sobic003G184900--Sobic005G178100 Sobic003G184900--Sobic001G182500 Sobic008G079300--Sobic003G184900 Sobic008G079300--Sobic003G105800 Sobic008G079300--Sobic007G225900 Sobic008G079300--Sobic004G321800 Sobic009G207600 Sobic009G207600 Sobic008G079300--Sobic009G207600 Sobic008G079300--Sobic005G178100 Sobic009G034700 Sobic009G034700 Sobic008G079300--Sobic009G034700 Sobic001G474500 Sobic001G474500 Sobic008G079300--Sobic001G474500 Sobic001G325200 Sobic001G325200 Sobic008G079300--Sobic001G325200 Sobic005G130400--Sobic002G324000 Sobic005G130400--Sobic002G190500 Sobic005G130400--Sobic004G113300 Sobic005G130400--Sobic004G050200 Sobic002G217133 Sobic002G217133 Sobic005G130400--Sobic002G217133 Sobic005G130400--Sobic006G036900 Sobic008G028800 Sobic008G028800 Sobic005G130400--Sobic008G028800 Sobic001G274800--Sobic003G184900 Sobic001G274800--Sobic006G100332 Sobic001G274800--Sobic004G321800 Sobic001G274800--Sobic002G324000 Sobic004G206401 Sobic004G206401 Sobic001G274800--Sobic004G206401 Sobic001G274800--Sobic003G105800 Sobic007G068100 Sobic007G068100 Sobic001G274800--Sobic007G068100 Sobic007G186200 Sobic007G186200 Sobic001G274800--Sobic007G186200 Sobic001G274800--Sobic001G182500 Sobic003G105800--Sobic003G184900 Sobic003G105800--Sobic008G079300 Sobic003G105800--Sobic004G321800 Sobic003G105800--Sobic001G325200 Sobic002G304000 Sobic002G304000 Sobic003G105800--Sobic002G304000 Sobic003G105800--Sobic007G225900 Sobic003G105800--Sobic006G100332 Sobic003G105800--Sobic003G087200 Sobic009G226300 Sobic009G226300 Sobic003G105800--Sobic009G226300 Sobic004G060900--Sobic001G474500 Sobic004G060900--Sobic004G321800 Sobic004G060900--Sobic007G068100 Sobic003G148800 Sobic003G148800 Sobic004G060900--Sobic003G148800 Sobic004G060900--Sobic001G325200 Sobic004G060900--Sobic002G324000 Sobic009G229800 Sobic009G229800 Sobic004G060900--Sobic009G229800 Sobic003G428400 Sobic003G428400 Sobic004G060900--Sobic003G428400 Sobic009G057300 Sobic009G057300 Sobic004G060900--Sobic009G057300
Octagon: transcription factors


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