Gene annotation
Transcriptome id Sobic.004G345800.1,Sobic.004G345800.2
Synonym PED1, Sb04g037280, PKT3, KAT2
Functional annotation Peroxisomal 3-ketoacyl-CoA thiolase 3 PKT3 (At) (PubMedID : 27208977)
3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed
UniProt A0A194YT56 , A0A194YT53
Pfam PF02803 PF00108
Panther DB PTHR18919 PTHR18919:SF93
NCBI CDD -
KEGG Orthology K07513; acetyl-CoA acyltransferase 1
Gene Ontology GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT2G33150 : peroxisomal 3-ketoacyl-CoA thiolase 3
RAP-DB (Rice) LOC_Os02g57260.1 : 3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed
MaizeGDB (Corn) Zm00025a031632 , Zm00025a035277 , Zm00025a030483 , Zm00025a001975 , Zm00025a022611 , Zm00025a046493
Brachypodium KQK01365
Barley HORVU6Hr1G091130.6 , HORVU6Hr1G091130.7 , HORVU6Hr1G091130.4 , HORVU6Hr1G091130.5 , HORVU6Hr1G091130.2 , HORVU6Hr1G091130.3 , HORVU6Hr1G091130.1 , HORVU6Hr1G091130.8 , HORVU6Hr1G091130.9 , HORVU6Hr1G091130.14 , HORVU6Hr1G091130.15 , HORVU6Hr1G091130.16 , HORVU6Hr1G091130.17 , HORVU6Hr1G091130.10 , HORVU6Hr1G091130.11 , HORVU6Hr1G091130.12 , HORVU6Hr1G091130.13
Wheat TraesCS6B02G432600 , TraesCS6A02G392400 , TraesCS6A02G392400
Populus -


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cDNA sequences
Sobic.004G345800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G061800 glutaryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
2 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
3 Sobic.003G184900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@esterase, putative, expressed -
4 Sobic.003G388251 - K01166: ribonuclease T2
5 Sobic.008G079300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
6 Sobic.007G068100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
7 Sobic.009G057300 acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
8 Sobic.006G127100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@malate synthase, glyoxysomal, putative, expressed K01638: aceB, malate synthase
9 Sobic.004G321800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@saccharopine dehydrogenase, putative, expressed K14157: alpha-aminoadipic semialdehyde synthase
10 Sobic.004G333200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
11 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
12 Sobic.003G354400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
13 Sobic.005G178100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@F-box/Kelch-repeat protein, putative, expressed -
14 Sobic.001G325200 Expressed in drought and oxidative stress(PubMedID : 29862293)@aldehyde oxidase, putative, expressed K00106: xanthine dehydrogenase/oxidase
15 Sobic.007G219900 uncharacterized glycosyltransferase, putative, expressed K06617: raffinose synthase
16 Sobic.002G190500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@alpha-amylase precursor, putative, expressed K01176: AMY, amyA, alpha-amylase
17 Sobic.002G324000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@isocitrate lyase, putative, expressed K01637: E4.1.3.1, isocitrate lyase
18 Sobic.003G105800 No apical meristem protein, putative, expressed -
19 Sobic.001G130000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
20 Sobic.009G034700 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin


Gene co-expression network
sample Sobic004G345800 Sobic004G345800 Sobic003G061800 Sobic003G061800 Sobic004G345800--Sobic003G061800 Sobic001G474500 Sobic001G474500 Sobic004G345800--Sobic001G474500 Sobic003G184900 Sobic003G184900 Sobic004G345800--Sobic003G184900 Sobic003G388251 Sobic003G388251 Sobic004G345800--Sobic003G388251 Sobic008G079300 Sobic008G079300 Sobic004G345800--Sobic008G079300 Sobic007G068100 Sobic007G068100 Sobic004G345800--Sobic007G068100 Sobic009G057300 Sobic009G057300 Sobic004G345800--Sobic009G057300 Sobic006G127100 Sobic006G127100 Sobic004G345800--Sobic006G127100 Sobic004G321800 Sobic004G321800 Sobic004G345800--Sobic004G321800 Sobic003G061800--Sobic009G057300 Sobic003G061800--Sobic004G345800 Sobic003G354400 Sobic003G354400 Sobic003G061800--Sobic003G354400 Sobic003G061800--Sobic001G474500 Sobic009G126900 Sobic009G126900 Sobic003G061800--Sobic009G126900 Sobic003G061800--Sobic003G388251 Sobic003G061800--Sobic007G068100 Sobic003G329400 Sobic003G329400 Sobic003G061800--Sobic003G329400 Sobic004G101900 Sobic004G101900 Sobic003G061800--Sobic004G101900 Sobic001G474500--Sobic007G068100 Sobic001G325200 Sobic001G325200 Sobic001G474500--Sobic001G325200 Sobic001G474500--Sobic009G057300 Sobic004G060900 Sobic004G060900 Sobic001G474500--Sobic004G060900 Sobic001G474500--Sobic003G388251 Sobic001G474500--Sobic004G321800 Sobic003G428400 Sobic003G428400 Sobic001G474500--Sobic003G428400 Sobic001G130000 Sobic001G130000 Sobic001G474500--Sobic001G130000 Sobic009G034700 Sobic009G034700 Sobic001G474500--Sobic009G034700 Sobic003G105800 Sobic003G105800 Sobic003G184900--Sobic003G105800 Sobic003G184900--Sobic008G079300 Sobic003G184900--Sobic004G321800 Sobic006G100332 Sobic006G100332 Sobic003G184900--Sobic006G100332 Sobic007G225900 Sobic007G225900 Sobic003G184900--Sobic007G225900 Sobic002G324000 Sobic002G324000 Sobic003G184900--Sobic002G324000 Sobic003G087200 Sobic003G087200 Sobic003G184900--Sobic003G087200 Sobic005G178100 Sobic005G178100 Sobic003G184900--Sobic005G178100 Sobic001G182500 Sobic001G182500 Sobic003G184900--Sobic001G182500 Sobic004G124200 Sobic004G124200 Sobic003G388251--Sobic004G124200 Sobic003G388251--Sobic007G068100 Sobic003G388251--Sobic001G325200 Sobic003G388251--Sobic001G474500 Sobic003G388251--Sobic004G101900 Sobic003G388251--Sobic005G178100 Sobic003G388251--Sobic009G034700 Sobic003G388251--Sobic009G057300 Sobic001G015500 Sobic001G015500 Sobic003G388251--Sobic001G015500 Sobic008G079300--Sobic003G184900 Sobic008G079300--Sobic003G105800 Sobic008G079300--Sobic007G225900 Sobic008G079300--Sobic004G321800 Sobic009G207600 Sobic009G207600 Sobic008G079300--Sobic009G207600 Sobic008G079300--Sobic005G178100 Sobic008G079300--Sobic009G034700 Sobic008G079300--Sobic001G474500 Sobic008G079300--Sobic001G325200 Sobic007G068100--Sobic001G325200 Sobic007G068100--Sobic001G474500 Sobic007G068100--Sobic003G388251 Sobic003G148800 Sobic003G148800 Sobic007G068100--Sobic003G148800 Sobic007G068100--Sobic009G057300 Sobic007G068100--Sobic004G101900 Sobic007G068100--Sobic003G428400 Sobic009G226300 Sobic009G226300 Sobic007G068100--Sobic009G226300 Sobic007G068100--Sobic004G321800 Sobic009G057300--Sobic003G061800 Sobic009G057300--Sobic001G474500 Sobic009G057300--Sobic007G068100 Sobic009G057300--Sobic001G325200 Sobic009G057300--Sobic003G388251 Sobic009G057300--Sobic003G329400 Sobic009G057300--Sobic003G354400 Sobic001G334600 Sobic001G334600 Sobic009G057300--Sobic001G334600 Sobic001G322700 Sobic001G322700 Sobic009G057300--Sobic001G322700 Sobic007G219900 Sobic007G219900 Sobic006G127100--Sobic007G219900 Sobic002G113300 Sobic002G113300 Sobic006G127100--Sobic002G113300 Sobic006G127100--Sobic004G345800 Sobic004G333200 Sobic004G333200 Sobic006G127100--Sobic004G333200 Sobic006G127100--Sobic004G321800 Sobic006G127100--Sobic003G148800 Sobic003G366400 Sobic003G366400 Sobic006G127100--Sobic003G366400 Sobic006G127100--Sobic002G324000 Sobic006G127100--Sobic003G184900 Sobic004G321800--Sobic006G100332 Sobic004G321800--Sobic003G087200 Sobic004G321800--Sobic003G148800 Sobic004G321800--Sobic009G226300 Sobic004G321800--Sobic001G325200 Sobic004G321800--Sobic003G105800 Sobic004G321800--Sobic003G184900 Sobic001G150600 Sobic001G150600 Sobic004G321800--Sobic001G150600 Sobic004G320600 Sobic004G320600 Sobic004G321800--Sobic004G320600
Octagon: transcription factors


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