Gene annotation
Transcriptome id Sobic.009G034700.2,Sobic.009G034700.5,Sobic.009G034700.6,Sobic.009G034700.4,Sobic.009G034700.1,Sobic.009G034700.3
Synonym ATAPA1, Sb09g002960, APA1
Functional annotation aspartic proteinase oryzasin-1 precursor, putative, expressed
UniProt A0A1B6P6G7
Pfam PF03489 PF05184 PF00026
Panther DB PTHR13683 PTHR13683:SF344
NCBI CDD KOG1339; Aspartyl protease
KEGG Orthology K08245; phytepsin
Gene Ontology GO:0006629; lipid metabolic process GO:0006508proteolysis GO:0004190aspartic-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT1G11910 : aspartic proteinase A1
RAP-DB (Rice) LOC_Os05g04630.5,LOC_Os05g04630.2,LOC_Os05g04630.3,LOC_Os05g04630.6 : retrotransposon protein, putative, SINE subclass, expressed
MaizeGDB (Corn) Zm00025a036631 , Zm00025a055336
Brachypodium PNT72537 , KQK07662 , KQK04817
Barley HORVU6Hr1G087820.2 , HORVU6Hr1G087820.1 , HORVU1Hr1G017570.3 , HORVU1Hr1G017570.2 , HORVU1Hr1G017570.1 , HORVU1Hr1G017570.7 , HORVU1Hr1G017570.6 , HORVU1Hr1G017570.5 , HORVU1Hr1G017570.4 , HORVU1Hr1G089360.1 , HORVU1Hr1G089360.3 , HORVU1Hr1G089360.2 , HORVU1Hr1G089360.5 , HORVU1Hr1G089360.4
Wheat TraesCS3A02G241100 , TraesCS6A02G372500 , TraesCS6B02G410400 , TraesCS1D02G083600 , TraesCS1D02G412200 , TraesCS6D02G356600 , TraesCS1B02G434000 , TraesCS6D02G356600 , TraesCS1D02G412200 , TraesCS1A02G082000 , TraesCS1A02G404500 , TraesCS1A02G404500 , TraesCS3D02G241400 , TraesCS3D02G241400
Populus -


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cDNA sequences
Sobic.009G034700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G178100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@F-box/Kelch-repeat protein, putative, expressed -
2 Sobic.003G388251 - K01166: ribonuclease T2
3 Sobic.004G124200 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
4 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
5 Sobic.001G069900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed K00088: IMPDH, IMP dehydrogenase
6 Sobic.006G028900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed -
7 Sobic.008G079300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
8 Sobic.001G325200 Expressed in drought and oxidative stress(PubMedID : 29862293)@aldehyde oxidase, putative, expressed K00106: xanthine dehydrogenase/oxidase
9 Sobic.001G015500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
10 Sobic.008G153400 peptidase, putative, expressed K18151: ureidoglycolate amidohydrolase
11 Sobic.001G130000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
12 Sobic.007G068100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
13 Sobic.002G266000 ankyrin repeat-containing protein, putative, expressed -
14 Sobic.009G207600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dnaJ domain containing protein, expressed -
15 Sobic.003G087200 nuclease PA3, putative, expressed -
16 Sobic.009G161000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
17 Sobic.003G184900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@esterase, putative, expressed -
18 Sobic.001G150600 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K13606: NOL, chlorophyll(ide) b reductase
19 Sobic.001G504900 pheophorbide a oxygenase, chloroplast precursor, putative, expressed K13071: PAO, pheophorbide a oxygenase
20 Sobic.003G105800 No apical meristem protein, putative, expressed -


Gene co-expression network
sample Sobic009G034700 Sobic009G034700 Sobic005G178100 Sobic005G178100 Sobic009G034700--Sobic005G178100 Sobic003G388251 Sobic003G388251 Sobic009G034700--Sobic003G388251 Sobic004G124200 Sobic004G124200 Sobic009G034700--Sobic004G124200 Sobic001G474500 Sobic001G474500 Sobic009G034700--Sobic001G474500 Sobic001G069900 Sobic001G069900 Sobic009G034700--Sobic001G069900 Sobic006G028900 Sobic006G028900 Sobic009G034700--Sobic006G028900 Sobic008G079300 Sobic008G079300 Sobic009G034700--Sobic008G079300 Sobic001G325200 Sobic001G325200 Sobic009G034700--Sobic001G325200 Sobic001G015500 Sobic001G015500 Sobic009G034700--Sobic001G015500 Sobic009G161000 Sobic009G161000 Sobic005G178100--Sobic009G161000 Sobic001G305800 Sobic001G305800 Sobic005G178100--Sobic001G305800 Sobic003G087200 Sobic003G087200 Sobic005G178100--Sobic003G087200 Sobic002G420700 Sobic002G420700 Sobic005G178100--Sobic002G420700 Sobic005G178100--Sobic001G015500 Sobic003G105800 Sobic003G105800 Sobic005G178100--Sobic003G105800 Sobic005G178100--Sobic009G034700 Sobic003G184900 Sobic003G184900 Sobic005G178100--Sobic003G184900 Sobic001G150600 Sobic001G150600 Sobic005G178100--Sobic001G150600 Sobic003G388251--Sobic004G124200 Sobic007G068100 Sobic007G068100 Sobic003G388251--Sobic007G068100 Sobic003G388251--Sobic001G325200 Sobic003G388251--Sobic001G474500 Sobic004G101900 Sobic004G101900 Sobic003G388251--Sobic004G101900 Sobic003G388251--Sobic005G178100 Sobic003G388251--Sobic009G034700 Sobic009G057300 Sobic009G057300 Sobic003G388251--Sobic009G057300 Sobic003G388251--Sobic001G015500 Sobic004G124200--Sobic003G388251 Sobic004G124200--Sobic004G101900 Sobic004G124200--Sobic001G325200 Sobic004G124200--Sobic001G015500 Sobic004G124200--Sobic009G161000 Sobic010G043400 Sobic010G043400 Sobic004G124200--Sobic010G043400 Sobic006G199000 Sobic006G199000 Sobic004G124200--Sobic006G199000 Sobic004G124200--Sobic007G068100 Sobic004G124200--Sobic005G178100 Sobic001G474500--Sobic007G068100 Sobic001G474500--Sobic001G325200 Sobic001G474500--Sobic009G057300 Sobic004G060900 Sobic004G060900 Sobic001G474500--Sobic004G060900 Sobic001G474500--Sobic003G388251 Sobic004G321800 Sobic004G321800 Sobic001G474500--Sobic004G321800 Sobic003G428400 Sobic003G428400 Sobic001G474500--Sobic003G428400 Sobic001G130000 Sobic001G130000 Sobic001G474500--Sobic001G130000 Sobic001G474500--Sobic009G034700 Sobic001G069900--Sobic001G015500 Sobic006G181300 Sobic006G181300 Sobic001G069900--Sobic006G181300 Sobic001G069900--Sobic003G087200 Sobic006G091700 Sobic006G091700 Sobic001G069900--Sobic006G091700 Sobic009G114000 Sobic009G114000 Sobic001G069900--Sobic009G114000 Sobic001G069900--Sobic001G150600 Sobic001G069900--Sobic005G178100 Sobic001G069900--Sobic009G034700 Sobic001G069900--Sobic001G325200 Sobic006G028900--Sobic001G325200 Sobic006G028900--Sobic009G034700 Sobic006G028900--Sobic004G124200 Sobic006G028900--Sobic001G015500 Sobic008G153400 Sobic008G153400 Sobic006G028900--Sobic008G153400 Sobic006G028900--Sobic005G178100 Sobic010G205200 Sobic010G205200 Sobic006G028900--Sobic010G205200 Sobic002G266000 Sobic002G266000 Sobic006G028900--Sobic002G266000 Sobic006G028900--Sobic004G101900 Sobic008G079300--Sobic003G184900 Sobic008G079300--Sobic003G105800 Sobic007G225900 Sobic007G225900 Sobic008G079300--Sobic007G225900 Sobic008G079300--Sobic004G321800 Sobic009G207600 Sobic009G207600 Sobic008G079300--Sobic009G207600 Sobic008G079300--Sobic005G178100 Sobic008G079300--Sobic009G034700 Sobic008G079300--Sobic001G474500 Sobic008G079300--Sobic001G325200 Sobic001G325200--Sobic007G068100 Sobic009G226300 Sobic009G226300 Sobic001G325200--Sobic009G226300 Sobic003G148800 Sobic003G148800 Sobic001G325200--Sobic003G148800 Sobic001G325200--Sobic004G321800 Sobic001G325200--Sobic004G101900 Sobic002G304000 Sobic002G304000 Sobic001G325200--Sobic002G304000 Sobic009G054500 Sobic009G054500 Sobic001G325200--Sobic009G054500 Sobic001G325200--Sobic001G015500 Sobic003G355600 Sobic003G355600 Sobic001G325200--Sobic003G355600 Sobic001G015500--Sobic001G069900 Sobic001G015500--Sobic001G325200 Sobic001G015500--Sobic006G091700 Sobic001G015500--Sobic003G087200 Sobic001G015500--Sobic004G101900 Sobic001G015500--Sobic005G178100 Sobic001G015500--Sobic004G124200 Sobic001G015500--Sobic001G150600 Sobic007G186200 Sobic007G186200 Sobic001G015500--Sobic007G186200
Octagon: transcription factors


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