Gene annotation
Transcriptome id Sobic.009G057300.1,Sobic.009G057300.2
Synonym Sb09g004840, ATG6, ATSCX, ACX4
Functional annotation acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed
UniProt A0A1B6P6Y2 , C5Z100
Pfam PF02771 PF02770 PF00441 PF02770 PF00441 PF02771
Panther DB PTHR10909 PTHR10909:SF331
NCBI CDD -
KEGG Orthology K00232; E1.3.3.6, ACOX1, acyl-CoA oxidase
Gene Ontology GO:0016627; oxidoreductase activity, acting on the CH-CH group of donors GO:0008152metabolic process GO:0003995acyl-CoA dehydrogenase activity GO:0003995acyl-CoA dehydrogenase activity GO:0016627oxidoreductase activity, acting on the CH-CH group of donors GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT3G51840 : acyl-CoA oxidase 4
RAP-DB (Rice) LOC_Os05g07090.1 : acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a042917
Brachypodium KQK07329 , KQK07494
Barley HORVU1Hr1G024240.13 , HORVU1Hr1G024240.12 , HORVU1Hr1G024240.11 , HORVU1Hr1G024240.10 , HORVU1Hr1G024240.9 , HORVU1Hr1G024240.8 , HORVU1Hr1G024240.7 , HORVU1Hr1G024240.6 , HORVU1Hr1G024240.5 , HORVU1Hr1G024240.4 , HORVU1Hr1G024240.3 , HORVU1Hr1G024240.2 , HORVU1Hr1G024240.1
Wheat TraesCS1D02G111900 , TraesCS1A02G110300 , TraesCS1B02G129300
Populus -


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cDNA sequences
Sobic.009G057300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G061800 glutaryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
2 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
3 Sobic.007G068100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
4 Sobic.001G325200 Expressed in drought and oxidative stress(PubMedID : 29862293)@aldehyde oxidase, putative, expressed K00106: xanthine dehydrogenase/oxidase
5 Sobic.003G388251 - K01166: ribonuclease T2
6 Sobic.003G329400 dihydropyrimidinase, putative, expressed K01464: DPYS, dht, dihydropyrimidinase
7 Sobic.003G354400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
8 Sobic.001G334600 OsFBX95 - F-box domain containing protein, expressed -
9 Sobic.001G322700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@5-oxoprolinase, putative, expressed K01469: OPLAH, OXP1, 5-oxoprolinase (ATP-hydrolysing)
10 Sobic.003G428400 beta-galactosidase, putative, expressed K01190: beta-galactosidase
11 Sobic.009G094300 emp24/gp25L/p24 family protein, putative, expressed -
12 Sobic.001G111150 - K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
13 Sobic.004G345800 Peroxisomal 3-ketoacyl-CoA thiolase 3 PKT3 (At)(PubMedID : 27208977)@3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
14 Sobic.001G015500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
15 Sobic.002G087800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1-aminocyclopropane-1-carboxylate oxidase 2, putative, expressed -
16 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
17 Sobic.007G024700 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
18 Sobic.003G148800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K09699: DBT, 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase)
19 Sobic.010G001500 AML1, putative, expressed -
20 Sobic.004G124200 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase


Gene co-expression network
sample Sobic009G057300 Sobic009G057300 Sobic003G061800 Sobic003G061800 Sobic009G057300--Sobic003G061800 Sobic001G474500 Sobic001G474500 Sobic009G057300--Sobic001G474500 Sobic007G068100 Sobic007G068100 Sobic009G057300--Sobic007G068100 Sobic001G325200 Sobic001G325200 Sobic009G057300--Sobic001G325200 Sobic003G388251 Sobic003G388251 Sobic009G057300--Sobic003G388251 Sobic003G329400 Sobic003G329400 Sobic009G057300--Sobic003G329400 Sobic003G354400 Sobic003G354400 Sobic009G057300--Sobic003G354400 Sobic001G334600 Sobic001G334600 Sobic009G057300--Sobic001G334600 Sobic001G322700 Sobic001G322700 Sobic009G057300--Sobic001G322700 Sobic003G061800--Sobic009G057300 Sobic004G345800 Sobic004G345800 Sobic003G061800--Sobic004G345800 Sobic003G061800--Sobic003G354400 Sobic003G061800--Sobic001G474500 Sobic009G126900 Sobic009G126900 Sobic003G061800--Sobic009G126900 Sobic003G061800--Sobic003G388251 Sobic003G061800--Sobic007G068100 Sobic003G061800--Sobic003G329400 Sobic004G101900 Sobic004G101900 Sobic003G061800--Sobic004G101900 Sobic001G474500--Sobic007G068100 Sobic001G474500--Sobic001G325200 Sobic001G474500--Sobic009G057300 Sobic004G060900 Sobic004G060900 Sobic001G474500--Sobic004G060900 Sobic001G474500--Sobic003G388251 Sobic004G321800 Sobic004G321800 Sobic001G474500--Sobic004G321800 Sobic003G428400 Sobic003G428400 Sobic001G474500--Sobic003G428400 Sobic001G130000 Sobic001G130000 Sobic001G474500--Sobic001G130000 Sobic009G034700 Sobic009G034700 Sobic001G474500--Sobic009G034700 Sobic007G068100--Sobic001G325200 Sobic007G068100--Sobic001G474500 Sobic007G068100--Sobic003G388251 Sobic003G148800 Sobic003G148800 Sobic007G068100--Sobic003G148800 Sobic007G068100--Sobic009G057300 Sobic007G068100--Sobic004G101900 Sobic007G068100--Sobic003G428400 Sobic009G226300 Sobic009G226300 Sobic007G068100--Sobic009G226300 Sobic007G068100--Sobic004G321800 Sobic001G325200--Sobic007G068100 Sobic001G325200--Sobic009G226300 Sobic001G325200--Sobic003G148800 Sobic001G325200--Sobic004G321800 Sobic001G325200--Sobic004G101900 Sobic002G304000 Sobic002G304000 Sobic001G325200--Sobic002G304000 Sobic009G054500 Sobic009G054500 Sobic001G325200--Sobic009G054500 Sobic001G015500 Sobic001G015500 Sobic001G325200--Sobic001G015500 Sobic003G355600 Sobic003G355600 Sobic001G325200--Sobic003G355600 Sobic004G124200 Sobic004G124200 Sobic003G388251--Sobic004G124200 Sobic003G388251--Sobic007G068100 Sobic003G388251--Sobic001G325200 Sobic003G388251--Sobic001G474500 Sobic003G388251--Sobic004G101900 Sobic005G178100 Sobic005G178100 Sobic003G388251--Sobic005G178100 Sobic003G388251--Sobic009G034700 Sobic003G388251--Sobic009G057300 Sobic003G388251--Sobic001G015500 Sobic003G329400--Sobic001G322700 Sobic008G062200 Sobic008G062200 Sobic003G329400--Sobic008G062200 Sobic003G329400--Sobic001G325200 Sobic010G107000 Sobic010G107000 Sobic003G329400--Sobic010G107000 Sobic003G329400--Sobic002G304000 Sobic003G329400--Sobic007G068100 Sobic003G329400--Sobic009G226300 Sobic003G329400--Sobic003G148800 Sobic003G329400--Sobic003G354400 Sobic003G354400--Sobic003G061800 Sobic003G354400--Sobic003G329400 Sobic003G354400--Sobic009G057300 Sobic010G130200 Sobic010G130200 Sobic003G354400--Sobic010G130200 Sobic008G144401 Sobic008G144401 Sobic003G354400--Sobic008G144401 Sobic001G120300 Sobic001G120300 Sobic003G354400--Sobic001G120300 Sobic001G111150 Sobic001G111150 Sobic003G354400--Sobic001G111150 Sobic008G147700 Sobic008G147700 Sobic003G354400--Sobic008G147700 Sobic003G354400--Sobic009G126900 Sobic001G334600--Sobic009G057300 Sobic001G334600--Sobic003G354400 Sobic001G334600--Sobic004G101900 Sobic001G334600--Sobic003G061800 Sobic001G334600--Sobic001G111150 Sobic004G225100 Sobic004G225100 Sobic001G334600--Sobic004G225100 Sobic006G199000 Sobic006G199000 Sobic001G334600--Sobic006G199000 Sobic001G334600--Sobic001G015500 Sobic010G264700 Sobic010G264700 Sobic001G334600--Sobic010G264700 Sobic001G322700--Sobic003G329400 Sobic001G322700--Sobic001G325200 Sobic001G322700--Sobic007G068100 Sobic001G322700--Sobic009G057300 Sobic001G322700--Sobic004G101900 Sobic001G322700--Sobic010G107000 Sobic003G149200 Sobic003G149200 Sobic001G322700--Sobic003G149200 Sobic001G322700--Sobic001G015500 Sobic001G322700--Sobic002G304000
Octagon: transcription factors


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