Gene annotation
Transcriptome id Sobic.003G428400.3,Sobic.003G428400.2,Sobic.003G428400.4
Synonym Sb03g046050
Functional annotation beta-galactosidase, putative, expressed
UniProt A0A1B6Q877 , A0A1B6Q873
Pfam PF00703 PF16353 PF02929 PF02837 PF02836 PF00703 PF16353 PF02837 PF02929 PF02836
Panther DB PTHR10066 PTHR10066:SF72
NCBI CDD KOG2024; Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2)
KEGG Orthology K01190; beta-galactosidase
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds GO:0009341beta-galactosidase complex GO:0004565beta-galactosidase activity


Orthologs (automatic annotation)
TAIR AT3G54440 : glycoside hydrolase family 2 protein
RAP-DB (Rice) LOC_Os01g72340.1 : beta-galactosidase, putative, expressed
MaizeGDB (Corn) Zm00025a025953
Brachypodium KQK11585
Barley HORVU3Hr1G108610.8 , HORVU3Hr1G108610.3 , HORVU3Hr1G108610.2 , HORVU3Hr1G108610.9 , HORVU3Hr1G108610.1 , HORVU3Hr1G108610.7 , HORVU3Hr1G108610.6 , HORVU3Hr1G108610.5 , HORVU3Hr1G108610.4 , HORVU3Hr1G108610.13 , HORVU3Hr1G108610.12 , HORVU3Hr1G108610.11 , HORVU3Hr1G108610.10
Wheat TraesCS3B02G549300 , TraesCS3D02G495000 , TraesCS3D02G495000
Populus PNT46516 , PNT46515 , PNT52359


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cDNA sequences
Sobic.003G428400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G068100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
2 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
3 Sobic.001G325200 Expressed in drought and oxidative stress(PubMedID : 29862293)@aldehyde oxidase, putative, expressed K00106: xanthine dehydrogenase/oxidase
4 Sobic.001G015500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
5 Sobic.010G205200 Ser/Thr protein phosphatase family protein, putative, expressed -
6 Sobic.001G069900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed K00088: IMPDH, IMP dehydrogenase
7 Sobic.009G057300 acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
8 Sobic.001G438600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dihydrodipicolinate reductase, putative, expressed K00215: 4-hydroxy-tetrahydrodipicolinate reductase
9 Sobic.010G112300 aluminum-activated malate transporter, putative, expressed -
10 Sobic.004G060900 STRUBBELIG-RECEPTOR FAMILY 3 precursor, putative, expressed -
11 Sobic.007G186200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@solute carrier family 35 member F1, putative, expressed K15287: solute carrier family 35, member F1/2
12 Sobic.001G322700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@5-oxoprolinase, putative, expressed K01469: OPLAH, OXP1, 5-oxoprolinase (ATP-hydrolysing)
13 Sobic.004G321800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@saccharopine dehydrogenase, putative, expressed K14157: alpha-aminoadipic semialdehyde synthase
14 Sobic.003G388251 - K01166: ribonuclease T2
15 Sobic.009G034700 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
16 Sobic.003G105800 No apical meristem protein, putative, expressed -
17 Sobic.008G079300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
18 Sobic.008G153400 peptidase, putative, expressed K18151: ureidoglycolate amidohydrolase
19 Sobic.001G207400 katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed K18643: katanin p80 WD40 repeat-containing subunit B1
20 Sobic.004G242500 glycosyl hydrolase family 47 domain contain protein, expressed K10084: ER degradation enhancer, mannosidase alpha-like 1


Gene co-expression network
sample Sobic003G428400 Sobic003G428400 Sobic007G068100 Sobic007G068100 Sobic003G428400--Sobic007G068100 Sobic001G474500 Sobic001G474500 Sobic003G428400--Sobic001G474500 Sobic001G325200 Sobic001G325200 Sobic003G428400--Sobic001G325200 Sobic001G015500 Sobic001G015500 Sobic003G428400--Sobic001G015500 Sobic010G205200 Sobic010G205200 Sobic003G428400--Sobic010G205200 Sobic001G069900 Sobic001G069900 Sobic003G428400--Sobic001G069900 Sobic009G057300 Sobic009G057300 Sobic003G428400--Sobic009G057300 Sobic001G438600 Sobic001G438600 Sobic003G428400--Sobic001G438600 Sobic010G112300 Sobic010G112300 Sobic003G428400--Sobic010G112300 Sobic007G068100--Sobic001G325200 Sobic007G068100--Sobic001G474500 Sobic003G388251 Sobic003G388251 Sobic007G068100--Sobic003G388251 Sobic003G148800 Sobic003G148800 Sobic007G068100--Sobic003G148800 Sobic007G068100--Sobic009G057300 Sobic004G101900 Sobic004G101900 Sobic007G068100--Sobic004G101900 Sobic007G068100--Sobic003G428400 Sobic009G226300 Sobic009G226300 Sobic007G068100--Sobic009G226300 Sobic004G321800 Sobic004G321800 Sobic007G068100--Sobic004G321800 Sobic001G474500--Sobic007G068100 Sobic001G474500--Sobic001G325200 Sobic001G474500--Sobic009G057300 Sobic004G060900 Sobic004G060900 Sobic001G474500--Sobic004G060900 Sobic001G474500--Sobic003G388251 Sobic001G474500--Sobic004G321800 Sobic001G474500--Sobic003G428400 Sobic001G130000 Sobic001G130000 Sobic001G474500--Sobic001G130000 Sobic009G034700 Sobic009G034700 Sobic001G474500--Sobic009G034700 Sobic001G325200--Sobic007G068100 Sobic001G325200--Sobic009G226300 Sobic001G325200--Sobic003G148800 Sobic001G325200--Sobic004G321800 Sobic001G325200--Sobic004G101900 Sobic002G304000 Sobic002G304000 Sobic001G325200--Sobic002G304000 Sobic009G054500 Sobic009G054500 Sobic001G325200--Sobic009G054500 Sobic001G325200--Sobic001G015500 Sobic003G355600 Sobic003G355600 Sobic001G325200--Sobic003G355600 Sobic001G015500--Sobic001G069900 Sobic001G015500--Sobic001G325200 Sobic006G091700 Sobic006G091700 Sobic001G015500--Sobic006G091700 Sobic003G087200 Sobic003G087200 Sobic001G015500--Sobic003G087200 Sobic001G015500--Sobic004G101900 Sobic005G178100 Sobic005G178100 Sobic001G015500--Sobic005G178100 Sobic004G124200 Sobic004G124200 Sobic001G015500--Sobic004G124200 Sobic001G150600 Sobic001G150600 Sobic001G015500--Sobic001G150600 Sobic007G186200 Sobic007G186200 Sobic001G015500--Sobic007G186200 Sobic010G205200--Sobic003G428400 Sobic010G205200--Sobic001G069900 Sobic006G028900 Sobic006G028900 Sobic010G205200--Sobic006G028900 Sobic010G205200--Sobic010G112300 Sobic010G205200--Sobic001G015500 Sobic001G301700 Sobic001G301700 Sobic010G205200--Sobic001G301700 Sobic010G205200--Sobic001G474500 Sobic010G205200--Sobic001G325200 Sobic010G205200--Sobic007G186200 Sobic001G069900--Sobic001G015500 Sobic006G181300 Sobic006G181300 Sobic001G069900--Sobic006G181300 Sobic001G069900--Sobic003G087200 Sobic001G069900--Sobic006G091700 Sobic009G114000 Sobic009G114000 Sobic001G069900--Sobic009G114000 Sobic001G069900--Sobic001G150600 Sobic001G069900--Sobic005G178100 Sobic001G069900--Sobic009G034700 Sobic001G069900--Sobic001G325200 Sobic003G061800 Sobic003G061800 Sobic009G057300--Sobic003G061800 Sobic009G057300--Sobic001G474500 Sobic009G057300--Sobic007G068100 Sobic009G057300--Sobic001G325200 Sobic009G057300--Sobic003G388251 Sobic003G329400 Sobic003G329400 Sobic009G057300--Sobic003G329400 Sobic003G354400 Sobic003G354400 Sobic009G057300--Sobic003G354400 Sobic001G334600 Sobic001G334600 Sobic009G057300--Sobic001G334600 Sobic001G322700 Sobic001G322700 Sobic009G057300--Sobic001G322700 Sobic001G438600--Sobic001G301700 Sobic004G355000 Sobic004G355000 Sobic001G438600--Sobic004G355000 Sobic001G438600--Sobic001G325200 Sobic001G207400 Sobic001G207400 Sobic001G438600--Sobic001G207400 Sobic001G438600--Sobic003G428400 Sobic001G438600--Sobic007G068100 Sobic001G438600--Sobic001G015500 Sobic001G438600--Sobic001G474500 Sobic001G438600--Sobic007G186200 Sobic002G270500 Sobic002G270500 Sobic010G112300--Sobic002G270500 Sobic010G112300--Sobic001G207400 Sobic010G112300--Sobic003G428400 Sobic004G113400 Sobic004G113400 Sobic010G112300--Sobic004G113400 Sobic002G430000 Sobic002G430000 Sobic010G112300--Sobic002G430000 Sobic010G112300--Sobic010G205200 Sobic008G167800 Sobic008G167800 Sobic010G112300--Sobic008G167800 Sobic010G112300--Sobic004G355000 Sobic009G094300 Sobic009G094300 Sobic010G112300--Sobic009G094300
Octagon: transcription factors


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