Gene annotation
Transcriptome id Sobic.004G242500.1
Synonym Sb04g028330
Functional annotation glycosyl hydrolase family 47 domain contain protein, expressed
UniProt C5XYW9
Pfam PF01532
Panther DB PTHR11742 PTHR11742:SF44
NCBI CDD -
KEGG Orthology K10084; ER degradation enhancer, mannosidase alpha-like 1
Gene Ontology GO:0016020; membrane GO:0005509calcium ion binding GO:0004571mannosyl-oligosaccharide 1,2-alpha-mannosidase activity


Orthologs (automatic annotation)
TAIR AT1G27520 : Glycosyl hydrolase family 47 protein
RAP-DB (Rice) LOC_Os02g50780.1 : glycosyl hydrolase family 47 domain contain protein, expressed
MaizeGDB (Corn) Zm00025a021996
Brachypodium KQK01982 , KQK01981
Barley HORVU6Hr1G076440.33 , HORVU6Hr1G076440.32 , HORVU6Hr1G076440.31 , HORVU6Hr1G076440.30 , HORVU6Hr1G076440.36 , HORVU6Hr1G076440.35 , HORVU6Hr1G076440.34 , HORVU6Hr1G076440.10 , HORVU6Hr1G076440.20 , HORVU6Hr1G076440.22 , HORVU6Hr1G076440.23 , HORVU6Hr1G076440.25 , HORVU6Hr1G076440.26 , HORVU6Hr1G076440.27 , HORVU6Hr1G076440.28 , HORVU6Hr1G076440.29 , HORVU6Hr1G076440.15 , HORVU6Hr1G076440.14 , HORVU6Hr1G076440.17 , HORVU6Hr1G076440.16 , HORVU6Hr1G076440.11 , HORVU6Hr1G076440.13 , HORVU6Hr1G076440.12 , HORVU6Hr1G076440.19 , HORVU6Hr1G076440.18 , HORVU6Hr1G076440.21 , HORVU6Hr1G076440.24 , HORVU6Hr1G076440.1 , HORVU6Hr1G076440.3 , HORVU6Hr1G076440.2 , HORVU6Hr1G076440.5 , HORVU6Hr1G076440.4 , HORVU6Hr1G076440.7 , HORVU6Hr1G076440.6 , HORVU6Hr1G076440.9 , HORVU6Hr1G076440.8
Wheat TraesCS6A02G309800 , TraesCS6D02G289200 , TraesCS6B02G339600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G224600 peroxisome assembly protein 12, putative, expressed K13345: PEX12, peroxin-12
2 Sobic.003G428400 beta-galactosidase, putative, expressed K01190: beta-galactosidase
3 Sobic.002G156000 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed K14724: SLC9A8, solute carrier family 9 (sodium/hydrogen exchanger), member 8
4 Sobic.001G207400 katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed K18643: katanin p80 WD40 repeat-containing subunit B1
5 Sobic.001G474700 expressed protein -
6 Sobic.007G200500 "Candidate orthologue to the wheat Pm40 gene, 5 Calcium-transporting ATPase plasma membrane-type"(PubMedID : 27755575)@"Ca ATPase, IIB type"(PubMedID : 22196357)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
7 Sobic.001G413900 "Ca ATPase, IIB type"(PubMedID : 22196357)@calcium-transporting ATPase, endoplasmic reticulum-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
8 Sobic.001G301700 MYB family transcription factor, putative, expressed K09522: DnaJ homolog subfamily C member 2
9 Sobic.004G162400 ERD1 protein, chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
10 Sobic.001G015500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
11 Sobic.001G322700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@5-oxoprolinase, putative, expressed K01469: OPLAH, OXP1, 5-oxoprolinase (ATP-hydrolysing)
12 Sobic.002G270500 UBX domain-containing protein, putative, expressed -
13 Sobic.007G068100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
14 Sobic.001G373200 lipase precursor, putative, expressed -
15 Sobic.001G438600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dihydrodipicolinate reductase, putative, expressed K00215: 4-hydroxy-tetrahydrodipicolinate reductase
16 Sobic.002G244100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -
18 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
19 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
20 Sobic.003G259100 GPI transamidase component family protein, putative, expressed K05289: GPI-anchor transamidase subunit GAA1


Gene co-expression network
sample Sobic004G242500 Sobic004G242500 Sobic001G224600 Sobic001G224600 Sobic004G242500--Sobic001G224600 Sobic003G428400 Sobic003G428400 Sobic004G242500--Sobic003G428400 Sobic002G156000 Sobic002G156000 Sobic004G242500--Sobic002G156000 Sobic001G207400 Sobic001G207400 Sobic004G242500--Sobic001G207400 Sobic001G474700 Sobic001G474700 Sobic004G242500--Sobic001G474700 Sobic007G200500 Sobic007G200500 Sobic004G242500--Sobic007G200500 Sobic001G413900 Sobic001G413900 Sobic004G242500--Sobic001G413900 Sobic001G301700 Sobic001G301700 Sobic004G242500--Sobic001G301700 Sobic004G162400 Sobic004G162400 Sobic004G242500--Sobic004G162400 Sobic001G290000 Sobic001G290000 Sobic001G224600--Sobic001G290000 Sobic004G264400 Sobic004G264400 Sobic001G224600--Sobic004G264400 Sobic007G024700 Sobic007G024700 Sobic001G224600--Sobic007G024700 Sobic001G224600--Sobic001G207400 Sobic004G355000 Sobic004G355000 Sobic001G224600--Sobic004G355000 Sobic009G113000 Sobic009G113000 Sobic001G224600--Sobic009G113000 Sobic004G113400 Sobic004G113400 Sobic001G224600--Sobic004G113400 Sobic001G065000 Sobic001G065000 Sobic001G224600--Sobic001G065000 Sobic004G052900 Sobic004G052900 Sobic001G224600--Sobic004G052900 Sobic007G068100 Sobic007G068100 Sobic003G428400--Sobic007G068100 Sobic001G474500 Sobic001G474500 Sobic003G428400--Sobic001G474500 Sobic001G325200 Sobic001G325200 Sobic003G428400--Sobic001G325200 Sobic001G015500 Sobic001G015500 Sobic003G428400--Sobic001G015500 Sobic010G205200 Sobic010G205200 Sobic003G428400--Sobic010G205200 Sobic001G069900 Sobic001G069900 Sobic003G428400--Sobic001G069900 Sobic009G057300 Sobic009G057300 Sobic003G428400--Sobic009G057300 Sobic001G438600 Sobic001G438600 Sobic003G428400--Sobic001G438600 Sobic010G112300 Sobic010G112300 Sobic003G428400--Sobic010G112300 Sobic002G156000--Sobic001G413900 Sobic010G072800 Sobic010G072800 Sobic002G156000--Sobic010G072800 Sobic004G209800 Sobic004G209800 Sobic002G156000--Sobic004G209800 Sobic004G004200 Sobic004G004200 Sobic002G156000--Sobic004G004200 Sobic004G261600 Sobic004G261600 Sobic002G156000--Sobic004G261600 Sobic004G236200 Sobic004G236200 Sobic002G156000--Sobic004G236200 Sobic004G016000 Sobic004G016000 Sobic002G156000--Sobic004G016000 Sobic002G430000 Sobic002G430000 Sobic002G156000--Sobic002G430000 Sobic001G281100 Sobic001G281100 Sobic002G156000--Sobic001G281100 Sobic001G207400--Sobic004G355000 Sobic001G207400--Sobic002G430000 Sobic002G270500 Sobic002G270500 Sobic001G207400--Sobic002G270500 Sobic006G204900 Sobic006G204900 Sobic001G207400--Sobic006G204900 Sobic005G157000 Sobic005G157000 Sobic001G207400--Sobic005G157000 Sobic010G139600 Sobic010G139600 Sobic001G207400--Sobic010G139600 Sobic002G111000 Sobic002G111000 Sobic001G207400--Sobic002G111000 Sobic003G322700 Sobic003G322700 Sobic001G207400--Sobic003G322700 Sobic001G050200 Sobic001G050200 Sobic001G207400--Sobic001G050200 Sobic009G126900 Sobic009G126900 Sobic001G474700--Sobic009G126900 Sobic001G427100 Sobic001G427100 Sobic001G474700--Sobic001G427100 Sobic001G373200 Sobic001G373200 Sobic001G474700--Sobic001G373200 Sobic003G195500 Sobic003G195500 Sobic001G474700--Sobic003G195500 Sobic003G005600 Sobic003G005600 Sobic001G474700--Sobic003G005600 Sobic004G295800 Sobic004G295800 Sobic001G474700--Sobic004G295800 Sobic003G036800 Sobic003G036800 Sobic001G474700--Sobic003G036800 Sobic001G474700--Sobic007G024700 Sobic002G132000 Sobic002G132000 Sobic001G474700--Sobic002G132000 Sobic007G200500--Sobic002G156000 Sobic007G200500--Sobic004G261600 Sobic007G200500--Sobic004G004200 Sobic003G427600 Sobic003G427600 Sobic007G200500--Sobic003G427600 Sobic007G200500--Sobic001G281100 Sobic004G228800 Sobic004G228800 Sobic007G200500--Sobic004G228800 Sobic007G200500--Sobic001G065000 Sobic003G126300 Sobic003G126300 Sobic007G200500--Sobic003G126300 Sobic007G200500--Sobic004G242500 Sobic001G534800 Sobic001G534800 Sobic001G413900--Sobic001G534800 Sobic001G413900--Sobic002G156000 Sobic001G413900--Sobic001G281100 Sobic004G002100 Sobic004G002100 Sobic001G413900--Sobic004G002100 Sobic001G413900--Sobic004G236200 Sobic001G413900--Sobic004G209800 Sobic001G413900--Sobic001G065000 Sobic001G056800 Sobic001G056800 Sobic001G413900--Sobic001G056800 Sobic003G229500 Sobic003G229500 Sobic001G413900--Sobic003G229500 Sobic001G301700--Sobic001G438600 Sobic001G301700--Sobic001G207400 Sobic001G301700--Sobic001G015500 Sobic002G266000 Sobic002G266000 Sobic001G301700--Sobic002G266000 Sobic008G093000 Sobic008G093000 Sobic001G301700--Sobic008G093000 Sobic001G301700--Sobic002G270500 Sobic001G301700--Sobic002G430000 Sobic001G301700--Sobic002G111000 Sobic001G301700--Sobic010G205200 Sobic005G216000 Sobic005G216000 Sobic004G162400--Sobic005G216000 Sobic002G304000 Sobic002G304000 Sobic004G162400--Sobic002G304000 Sobic005G231900 Sobic005G231900 Sobic004G162400--Sobic005G231900 Sobic004G101900 Sobic004G101900 Sobic004G162400--Sobic004G101900 Sobic009G161000 Sobic009G161000 Sobic004G162400--Sobic009G161000 Sobic005G178100 Sobic005G178100 Sobic004G162400--Sobic005G178100 Sobic003G355600 Sobic003G355600 Sobic004G162400--Sobic003G355600 Sobic004G162400--Sobic009G126900 Sobic004G162400--Sobic001G015500
Octagon: transcription factors


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