Gene annotation
Transcriptome id Sobic.001G224600.1
Synonym APM4, ATPEX12, PEX12, Sb01g019750
Functional annotation peroxisome assembly protein 12, putative, expressed
UniProt C5WZC5
Pfam PF04757
Panther DB PTHR12888 PTHR12888:SF0
NCBI CDD KOG0826; Predicted E3 ubiquitin ligase involved in peroxisome organization
KEGG Orthology K13345; PEX12, peroxin-12
Gene Ontology GO:0008270; zinc ion binding GO:0008022protein C-terminus binding GO:0006625protein targeting to peroxisome GO:0005779integral component of peroxisomal membrane


Orthologs (automatic annotation)
TAIR AT3G04460 : peroxin-12
RAP-DB (Rice) LOC_Os10g32960.1 : peroxisome assembly protein 12, putative, expressed
MaizeGDB (Corn) Zm00025a006678
Brachypodium KQJ97019
Barley HORVU1Hr1G039230.12 , HORVU1Hr1G039230.13 , HORVU1Hr1G039230.10 , HORVU1Hr1G039230.11 , HORVU1Hr1G039230.2 , HORVU1Hr1G039230.3 , HORVU1Hr1G039230.4 , HORVU1Hr1G039230.5 , HORVU1Hr1G039230.6 , HORVU1Hr1G039230.7 , HORVU1Hr1G039230.8 , HORVU1Hr1G039230.9
Wheat TraesCS1A02G149100 , TraesCS1D02G146400 , TraesCS1B02G167000 , TraesCS1B02G167000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G290000 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05605: 3-hydroxyisobutyryl-CoA hydrolase
2 Sobic.004G264400 TBC domain containing protein, expressed -
3 Sobic.007G024700 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
4 Sobic.001G207400 katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed K18643: katanin p80 WD40 repeat-containing subunit B1
5 Sobic.004G355000 SAC9, putative, expressed -
6 Sobic.009G113000 chaperone protein dnaJ 49, putative, expressed K09518: DnaJ homolog subfamily B member 12
7 Sobic.004G113400 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
8 Sobic.001G065000 expressed protein -
9 Sobic.004G052900 biotin--protein ligase, putative, expressed K01942: biotin---protein ligase
10 Sobic.006G082400 expressed protein -
11 Sobic.002G132000 serine/threonine-protein kinase AFC2, putative, expressed K08287: dual-specificity kinase
12 Sobic.003G259100 GPI transamidase component family protein, putative, expressed K05289: GPI-anchor transamidase subunit GAA1
13 Sobic.001G050200 expressed protein -
14 Sobic.004G339100 endoribonuclease, putative, expressed K06927: diphthine-ammonia ligase
15 Sobic.004G347400 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
16 Sobic.004G329400 formin, putative, expressed -
17 Sobic.003G118200 phosphoadenosine phosphosulfate, putative, expressed -
18 Sobic.002G419800 structural constituent of ribosome, putative, expressed -
19 Sobic.002G427050 - -
20 Sobic.004G331100 WD domain and HEAT domain containing protein, putative, expressed K08333: PIK3R4, phosphoinositide-3-kinase, regulatory subunit 4


Gene co-expression network
sample Sobic001G224600 Sobic001G224600 Sobic001G290000 Sobic001G290000 Sobic001G224600--Sobic001G290000 Sobic004G264400 Sobic004G264400 Sobic001G224600--Sobic004G264400 Sobic007G024700 Sobic007G024700 Sobic001G224600--Sobic007G024700 Sobic001G207400 Sobic001G207400 Sobic001G224600--Sobic001G207400 Sobic004G355000 Sobic004G355000 Sobic001G224600--Sobic004G355000 Sobic009G113000 Sobic009G113000 Sobic001G224600--Sobic009G113000 Sobic004G113400 Sobic004G113400 Sobic001G224600--Sobic004G113400 Sobic001G065000 Sobic001G065000 Sobic001G224600--Sobic001G065000 Sobic004G052900 Sobic004G052900 Sobic001G224600--Sobic004G052900 Sobic001G290000--Sobic001G224600 Sobic001G290000--Sobic007G024700 Sobic002G132000 Sobic002G132000 Sobic001G290000--Sobic002G132000 Sobic004G295800 Sobic004G295800 Sobic001G290000--Sobic004G295800 Sobic008G191100 Sobic008G191100 Sobic001G290000--Sobic008G191100 Sobic001G290000--Sobic004G264400 Sobic002G419800 Sobic002G419800 Sobic001G290000--Sobic002G419800 Sobic001G137100 Sobic001G137100 Sobic001G290000--Sobic001G137100 Sobic009G249200 Sobic009G249200 Sobic001G290000--Sobic009G249200 Sobic001G109800 Sobic001G109800 Sobic004G264400--Sobic001G109800 Sobic004G264400--Sobic009G113000 Sobic004G264400--Sobic002G132000 Sobic004G264400--Sobic007G024700 Sobic004G331100 Sobic004G331100 Sobic004G264400--Sobic004G331100 Sobic006G115600 Sobic006G115600 Sobic004G264400--Sobic006G115600 Sobic004G264400--Sobic001G065000 Sobic004G274200 Sobic004G274200 Sobic004G264400--Sobic004G274200 Sobic007G075400 Sobic007G075400 Sobic004G264400--Sobic007G075400 Sobic002G270500 Sobic002G270500 Sobic007G024700--Sobic002G270500 Sobic009G094300 Sobic009G094300 Sobic007G024700--Sobic009G094300 Sobic007G024700--Sobic009G249200 Sobic007G024700--Sobic004G052900 Sobic001G270400 Sobic001G270400 Sobic007G024700--Sobic001G270400 Sobic007G024700--Sobic004G264400 Sobic003G305200 Sobic003G305200 Sobic007G024700--Sobic003G305200 Sobic007G024700--Sobic002G132000 Sobic007G024700--Sobic002G419800 Sobic001G207400--Sobic004G355000 Sobic002G430000 Sobic002G430000 Sobic001G207400--Sobic002G430000 Sobic001G207400--Sobic002G270500 Sobic006G204900 Sobic006G204900 Sobic001G207400--Sobic006G204900 Sobic005G157000 Sobic005G157000 Sobic001G207400--Sobic005G157000 Sobic010G139600 Sobic010G139600 Sobic001G207400--Sobic010G139600 Sobic002G111000 Sobic002G111000 Sobic001G207400--Sobic002G111000 Sobic003G322700 Sobic003G322700 Sobic001G207400--Sobic003G322700 Sobic001G050200 Sobic001G050200 Sobic001G207400--Sobic001G050200 Sobic004G355000--Sobic001G207400 Sobic004G355000--Sobic002G430000 Sobic001G248300 Sobic001G248300 Sobic004G355000--Sobic001G248300 Sobic005G001000 Sobic005G001000 Sobic004G355000--Sobic005G001000 Sobic004G329400 Sobic004G329400 Sobic004G355000--Sobic004G329400 Sobic004G355000--Sobic005G157000 Sobic004G355000--Sobic003G322700 Sobic004G355000--Sobic004G113400 Sobic009G010600 Sobic009G010600 Sobic004G355000--Sobic009G010600 Sobic003G118200 Sobic003G118200 Sobic009G113000--Sobic003G118200 Sobic009G113000--Sobic004G264400 Sobic009G053900 Sobic009G053900 Sobic009G113000--Sobic009G053900 Sobic009G113000--Sobic007G075400 Sobic004G347400 Sobic004G347400 Sobic009G113000--Sobic004G347400 Sobic001G121200 Sobic001G121200 Sobic009G113000--Sobic001G121200 Sobic009G113000--Sobic004G331100 Sobic004G200200 Sobic004G200200 Sobic009G113000--Sobic004G200200 Sobic001G146800 Sobic001G146800 Sobic009G113000--Sobic001G146800 Sobic004G113400--Sobic009G010600 Sobic003G408600 Sobic003G408600 Sobic004G113400--Sobic003G408600 Sobic004G113400--Sobic004G329400 Sobic001G058700 Sobic001G058700 Sobic004G113400--Sobic001G058700 Sobic008G099800 Sobic008G099800 Sobic004G113400--Sobic008G099800 Sobic001G178700 Sobic001G178700 Sobic004G113400--Sobic001G178700 Sobic001G117200 Sobic001G117200 Sobic004G113400--Sobic001G117200 Sobic001G534800 Sobic001G534800 Sobic004G113400--Sobic001G534800 Sobic004G113400--Sobic002G430000 Sobic001G114000 Sobic001G114000 Sobic001G065000--Sobic001G114000 Sobic001G281100 Sobic001G281100 Sobic001G065000--Sobic001G281100 Sobic006G012500 Sobic006G012500 Sobic001G065000--Sobic006G012500 Sobic001G065000--Sobic001G534800 Sobic005G118600 Sobic005G118600 Sobic001G065000--Sobic005G118600 Sobic001G065000--Sobic008G099800 Sobic003G093800 Sobic003G093800 Sobic001G065000--Sobic003G093800 Sobic006G037700 Sobic006G037700 Sobic001G065000--Sobic006G037700 Sobic003G229500 Sobic003G229500 Sobic001G065000--Sobic003G229500 Sobic003G109100 Sobic003G109100 Sobic004G052900--Sobic003G109100 Sobic004G052900--Sobic007G024700 Sobic003G100800 Sobic003G100800 Sobic004G052900--Sobic003G100800 Sobic007G172400 Sobic007G172400 Sobic004G052900--Sobic007G172400 Sobic002G340100 Sobic002G340100 Sobic004G052900--Sobic002G340100 Sobic004G052900--Sobic002G419800 Sobic006G245400 Sobic006G245400 Sobic004G052900--Sobic006G245400 Sobic004G052900--Sobic001G248300 Sobic004G052900--Sobic009G094300
Octagon: transcription factors


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