Gene annotation
Transcriptome id Sobic.004G339100.1
Synonym
Functional annotation endoribonuclease, putative, expressed
UniProt A0A194YU04
Pfam PF01042 PF01902
Panther DB PTHR12196
NCBI CDD KOG2316; Predicted ATPase (PP-loop superfamily)
KEGG Orthology K06927; diphthine-ammonia ligase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G04480 : endoribonucleases
RAP-DB (Rice) LOC_Os02g56565.1 : endoribonuclease, putative, expressed
MaizeGDB (Corn) Zm00025a022548
Brachypodium KQK01274
Barley HORVU6Hr1G088800.28 , HORVU6Hr1G088800.23 , HORVU6Hr1G088800.22 , HORVU6Hr1G088800.21 , HORVU6Hr1G088800.20 , HORVU6Hr1G088800.16 , HORVU6Hr1G088800.17 , HORVU6Hr1G088800.14 , HORVU6Hr1G088800.15 , HORVU6Hr1G088800.18 , HORVU6Hr1G088800.19 , HORVU6Hr1G088800.7 , HORVU6Hr1G088800.8 , HORVU6Hr1G088800.27 , HORVU6Hr1G088800.26 , HORVU6Hr1G088800.25 , HORVU6Hr1G088800.24
Wheat TraesCS6D02G362600 , TraesCS6A02G378100 , TraesCS6B02G415800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G113400 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
2 Sobic.009G010600 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
3 Sobic.004G329400 formin, putative, expressed -
4 Sobic.007G024700 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
5 Sobic.003G287100 NADPH reductase, putative, expressed -
6 Sobic.008G099800 expressed protein -
7 Sobic.001G534800 Putative ortholog gene associated with awn presence/absence in wheat(PubMedID : 25237112)@adapitin protein, putative, expressed K11824: AP-2 complex subunit alpha
8 Sobic.004G135400 expressed protein -
9 Sobic.004G277200 GPI transamidase subunit PIG-U domain containing protein, expressed K05293: GPI-anchor transamidase subunit U
10 Sobic.004G052900 biotin--protein ligase, putative, expressed K01942: biotin---protein ligase
11 Sobic.010G205800 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
12 Sobic.004G002400 expressed protein -
13 Sobic.006G182200 WD domain, G-beta repeat domain containing protein, expressed -
14 Sobic.006G208500 proteasome/cyclosome repeat containing protein, expressed K03032: PSMD1, 26S proteasome regulatory subunit N2
15 Sobic.004G158700 copine, putative, expressed -
16 Sobic.006G114500 per1-like family protein, putative, expressed -
17 Sobic.009G094300 emp24/gp25L/p24 family protein, putative, expressed -
18 Sobic.001G178700 NBS-LRR disease resistance protein, putative, expressed -
19 Sobic.001G291000 disease resistance protein RPM1, putative, expressed K13457: RPM1, disease resistance protein RPM1
20 Sobic.008G004600 ubiquitin-activating enzyme, putative, expressed K03178: UBE1, ubiquitin-activating enzyme E1


Gene co-expression network
sample Sobic004G339100 Sobic004G339100 Sobic004G113400 Sobic004G113400 Sobic004G339100--Sobic004G113400 Sobic009G010600 Sobic009G010600 Sobic004G339100--Sobic009G010600 Sobic004G329400 Sobic004G329400 Sobic004G339100--Sobic004G329400 Sobic007G024700 Sobic007G024700 Sobic004G339100--Sobic007G024700 Sobic003G287100 Sobic003G287100 Sobic004G339100--Sobic003G287100 Sobic008G099800 Sobic008G099800 Sobic004G339100--Sobic008G099800 Sobic001G534800 Sobic001G534800 Sobic004G339100--Sobic001G534800 Sobic004G135400 Sobic004G135400 Sobic004G339100--Sobic004G135400 Sobic004G277200 Sobic004G277200 Sobic004G339100--Sobic004G277200 Sobic004G113400--Sobic009G010600 Sobic003G408600 Sobic003G408600 Sobic004G113400--Sobic003G408600 Sobic004G113400--Sobic004G329400 Sobic001G058700 Sobic001G058700 Sobic004G113400--Sobic001G058700 Sobic004G113400--Sobic008G099800 Sobic001G178700 Sobic001G178700 Sobic004G113400--Sobic001G178700 Sobic001G117200 Sobic001G117200 Sobic004G113400--Sobic001G117200 Sobic004G113400--Sobic001G534800 Sobic002G430000 Sobic002G430000 Sobic004G113400--Sobic002G430000 Sobic009G010600--Sobic004G113400 Sobic001G474600 Sobic001G474600 Sobic009G010600--Sobic001G474600 Sobic009G010600--Sobic001G178700 Sobic009G010600--Sobic001G058700 Sobic001G281100 Sobic001G281100 Sobic009G010600--Sobic001G281100 Sobic004G355000 Sobic004G355000 Sobic009G010600--Sobic004G355000 Sobic009G010600--Sobic004G329400 Sobic002G427050 Sobic002G427050 Sobic009G010600--Sobic002G427050 Sobic005G026200 Sobic005G026200 Sobic009G010600--Sobic005G026200 Sobic004G329400--Sobic004G113400 Sobic009G027300 Sobic009G027300 Sobic004G329400--Sobic009G027300 Sobic005G157000 Sobic005G157000 Sobic004G329400--Sobic005G157000 Sobic004G329400--Sobic001G058700 Sobic004G329400--Sobic004G355000 Sobic004G269200 Sobic004G269200 Sobic004G329400--Sobic004G269200 Sobic004G329400--Sobic007G024700 Sobic007G172400 Sobic007G172400 Sobic004G329400--Sobic007G172400 Sobic004G329400--Sobic003G408600 Sobic002G270500 Sobic002G270500 Sobic007G024700--Sobic002G270500 Sobic009G094300 Sobic009G094300 Sobic007G024700--Sobic009G094300 Sobic009G249200 Sobic009G249200 Sobic007G024700--Sobic009G249200 Sobic004G052900 Sobic004G052900 Sobic007G024700--Sobic004G052900 Sobic001G270400 Sobic001G270400 Sobic007G024700--Sobic001G270400 Sobic004G264400 Sobic004G264400 Sobic007G024700--Sobic004G264400 Sobic003G305200 Sobic003G305200 Sobic007G024700--Sobic003G305200 Sobic002G132000 Sobic002G132000 Sobic007G024700--Sobic002G132000 Sobic002G419800 Sobic002G419800 Sobic007G024700--Sobic002G419800 Sobic003G287100--Sobic004G339100 Sobic001G017700 Sobic001G017700 Sobic003G287100--Sobic001G017700 Sobic001G201500 Sobic001G201500 Sobic003G287100--Sobic001G201500 Sobic001G201400 Sobic001G201400 Sobic003G287100--Sobic001G201400 Sobic007G184500 Sobic007G184500 Sobic003G287100--Sobic007G184500 Sobic003G382500 Sobic003G382500 Sobic003G287100--Sobic003G382500 Sobic007G077400 Sobic007G077400 Sobic003G287100--Sobic007G077400 Sobic006G114500 Sobic006G114500 Sobic003G287100--Sobic006G114500 Sobic006G208500 Sobic006G208500 Sobic003G287100--Sobic006G208500 Sobic006G012500 Sobic006G012500 Sobic008G099800--Sobic006G012500 Sobic008G099800--Sobic001G534800 Sobic008G099800--Sobic004G135400 Sobic001G347500 Sobic001G347500 Sobic008G099800--Sobic001G347500 Sobic008G099800--Sobic001G281100 Sobic008G099800--Sobic004G113400 Sobic004G039600 Sobic004G039600 Sobic008G099800--Sobic004G039600 Sobic003G072200 Sobic003G072200 Sobic008G099800--Sobic003G072200 Sobic001G065000 Sobic001G065000 Sobic008G099800--Sobic001G065000 Sobic001G534800--Sobic001G281100 Sobic001G534800--Sobic008G099800 Sobic004G004300 Sobic004G004300 Sobic001G534800--Sobic004G004300 Sobic001G534800--Sobic004G135400 Sobic005G003300 Sobic005G003300 Sobic001G534800--Sobic005G003300 Sobic001G534800--Sobic005G026200 Sobic001G534800--Sobic006G012500 Sobic001G534800--Sobic004G113400 Sobic001G534800--Sobic001G065000 Sobic004G135400--Sobic001G534800 Sobic004G135400--Sobic006G208500 Sobic004G135400--Sobic008G099800 Sobic004G135400--Sobic004G277200 Sobic004G135400--Sobic005G003300 Sobic008G004600 Sobic008G004600 Sobic004G135400--Sobic008G004600 Sobic006G126100 Sobic006G126100 Sobic004G135400--Sobic006G126100 Sobic002G042600 Sobic002G042600 Sobic004G135400--Sobic002G042600 Sobic009G245800 Sobic009G245800 Sobic004G135400--Sobic009G245800 Sobic004G277200--Sobic004G135400 Sobic004G277200--Sobic008G099800 Sobic010G118950 Sobic010G118950 Sobic004G277200--Sobic010G118950 Sobic007G225100 Sobic007G225100 Sobic004G277200--Sobic007G225100 Sobic003G104000 Sobic003G104000 Sobic004G277200--Sobic003G104000 Sobic004G277200--Sobic006G208500 Sobic003G332500 Sobic003G332500 Sobic004G277200--Sobic003G332500 Sobic006G200700 Sobic006G200700 Sobic004G277200--Sobic006G200700 Sobic009G201700 Sobic009G201700 Sobic004G277200--Sobic009G201700
Octagon: transcription factors


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