Gene annotation
Transcriptome id Sobic.006G114500.1
Synonym Sb06g019590
Functional annotation per1-like family protein, putative, expressed
UniProt C5YAA7
Pfam PF04080
Panther DB PTHR13148 PTHR13148:SF2
NCBI CDD KOG2970; Predicted membrane protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G16560 : Per1-like family protein
RAP-DB (Rice) LOC_Os05g13330.1 : per1-like family protein, putative, expressed
MaizeGDB (Corn) Zm00025a056265 , Zm00025a011052
Brachypodium -
Barley HORVU4Hr1G088840.2 , HORVU4Hr1G088840.1
Wheat TraesCS2D02G527000 , TraesCS4B02G399000 , TraesCS7A02G112300 , TraesCS7A02G112300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G142100 WD domain, G-beta repeat domain containing protein, expressed K04536: guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
2 Sobic.002G313500 protein kinase PKN/PRK1, effector, putative, expressed -
3 Sobic.004G350100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
4 Sobic.004G021100 SSE1, putative, expressed K13335: peroxin-16
5 Sobic.004G339100 endoribonuclease, putative, expressed K06927: diphthine-ammonia ligase
6 Sobic.004G205600 bromodomain domain containing protein, expressed -
7 Sobic.001G201400 - K12614: DDX6, RCK, ATP-dependent RNA helicase DDX6/DHH1
8 Sobic.001G466700 peptidyl-prolyl cis-trans isomerase, putative, expressed K10598: PPIL2, CYC4, peptidyl-prolyl cis-trans isomerase-like 2
9 Sobic.009G257800 sodium/calcium exchanger protein, putative, expressed K07300: chaA, Ca2+:H+ antiporter
10 Sobic.003G401000 adaptin, putative, expressed K12400: AP-4 complex subunit epsilon-1
11 Sobic.004G002400 expressed protein -
12 Sobic.004G283000 nucleic acid binding protein, putative, expressed -
13 Sobic.004G325400 cyclic nucleotide-gated ion channel 14, putative, expressed K05391: cyclic nucleotide gated channel, plant
14 Sobic.001G394600 expressed protein -
15 Sobic.006G252700 protein kinase domain containing protein, expressed -
16 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
17 Sobic.003G145900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyltransferase, putative, expressed K13510: lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase
18 Sobic.004G007300 expressed protein -
19 Sobic.002G010300 photoperiodic flowering time gene(PubMedID : 22394582)@casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
20 Sobic.007G026500 OsFBK21 - F-box domain and kelch repeat containing protein, expressed -


Gene co-expression network
sample Sobic006G114500 Sobic006G114500 Sobic001G142100 Sobic001G142100 Sobic006G114500--Sobic001G142100 Sobic002G313500 Sobic002G313500 Sobic006G114500--Sobic002G313500 Sobic004G350100 Sobic004G350100 Sobic006G114500--Sobic004G350100 Sobic004G021100 Sobic004G021100 Sobic006G114500--Sobic004G021100 Sobic004G339100 Sobic004G339100 Sobic006G114500--Sobic004G339100 Sobic004G205600 Sobic004G205600 Sobic006G114500--Sobic004G205600 Sobic001G201400 Sobic001G201400 Sobic006G114500--Sobic001G201400 Sobic001G466700 Sobic001G466700 Sobic006G114500--Sobic001G466700 Sobic009G257800 Sobic009G257800 Sobic006G114500--Sobic009G257800 Sobic005G004200 Sobic005G004200 Sobic001G142100--Sobic005G004200 Sobic008G131000 Sobic008G131000 Sobic001G142100--Sobic008G131000 Sobic003G187500 Sobic003G187500 Sobic001G142100--Sobic003G187500 Sobic005G216300 Sobic005G216300 Sobic001G142100--Sobic005G216300 Sobic003G401100 Sobic003G401100 Sobic001G142100--Sobic003G401100 Sobic006G252700 Sobic006G252700 Sobic001G142100--Sobic006G252700 Sobic003G439800 Sobic003G439800 Sobic001G142100--Sobic003G439800 Sobic001G142100--Sobic006G114500 Sobic003G114700 Sobic003G114700 Sobic001G142100--Sobic003G114700 Sobic001G143500 Sobic001G143500 Sobic002G313500--Sobic001G143500 Sobic001G371200 Sobic001G371200 Sobic002G313500--Sobic001G371200 Sobic002G313500--Sobic004G350100 Sobic002G378200 Sobic002G378200 Sobic002G313500--Sobic002G378200 Sobic004G283000 Sobic004G283000 Sobic002G313500--Sobic004G283000 Sobic008G139700 Sobic008G139700 Sobic002G313500--Sobic008G139700 Sobic004G007300 Sobic004G007300 Sobic002G313500--Sobic004G007300 Sobic002G313500--Sobic001G466700 Sobic010G017800 Sobic010G017800 Sobic002G313500--Sobic010G017800 Sobic007G118200 Sobic007G118200 Sobic004G350100--Sobic007G118200 Sobic010G033400 Sobic010G033400 Sobic004G350100--Sobic010G033400 Sobic004G350100--Sobic006G252700 Sobic003G081000 Sobic003G081000 Sobic004G350100--Sobic003G081000 Sobic004G350100--Sobic004G007300 Sobic009G056800 Sobic009G056800 Sobic004G350100--Sobic009G056800 Sobic004G350100--Sobic004G283000 Sobic004G350100--Sobic001G143500 Sobic001G028400 Sobic001G028400 Sobic004G350100--Sobic001G028400 Sobic004G021100--Sobic009G056800 Sobic007G026300 Sobic007G026300 Sobic004G021100--Sobic007G026300 Sobic001G512700 Sobic001G512700 Sobic004G021100--Sobic001G512700 Sobic006G173100 Sobic006G173100 Sobic004G021100--Sobic006G173100 Sobic007G104800 Sobic007G104800 Sobic004G021100--Sobic007G104800 Sobic004G274200 Sobic004G274200 Sobic004G021100--Sobic004G274200 Sobic004G021100--Sobic004G205600 Sobic003G187400 Sobic003G187400 Sobic004G021100--Sobic003G187400 Sobic007G118600 Sobic007G118600 Sobic004G021100--Sobic007G118600 Sobic004G113400 Sobic004G113400 Sobic004G339100--Sobic004G113400 Sobic009G010600 Sobic009G010600 Sobic004G339100--Sobic009G010600 Sobic004G329400 Sobic004G329400 Sobic004G339100--Sobic004G329400 Sobic007G024700 Sobic007G024700 Sobic004G339100--Sobic007G024700 Sobic003G287100 Sobic003G287100 Sobic004G339100--Sobic003G287100 Sobic008G099800 Sobic008G099800 Sobic004G339100--Sobic008G099800 Sobic001G534800 Sobic001G534800 Sobic004G339100--Sobic001G534800 Sobic004G135400 Sobic004G135400 Sobic004G339100--Sobic004G135400 Sobic004G277200 Sobic004G277200 Sobic004G339100--Sobic004G277200 Sobic004G057400 Sobic004G057400 Sobic004G205600--Sobic004G057400 Sobic001G497300 Sobic001G497300 Sobic004G205600--Sobic001G497300 Sobic001G090400 Sobic001G090400 Sobic004G205600--Sobic001G090400 Sobic004G205600--Sobic003G081000 Sobic004G205600--Sobic007G026300 Sobic009G000500 Sobic009G000500 Sobic004G205600--Sobic009G000500 Sobic002G157300 Sobic002G157300 Sobic004G205600--Sobic002G157300 Sobic009G065100 Sobic009G065100 Sobic004G205600--Sobic009G065100 Sobic002G157000 Sobic002G157000 Sobic004G205600--Sobic002G157000 Sobic001G201500 Sobic001G201500 Sobic001G201400--Sobic001G201500 Sobic004G039600 Sobic004G039600 Sobic001G201400--Sobic004G039600 Sobic001G201400--Sobic003G187500 Sobic001G201400--Sobic008G131000 Sobic001G201400--Sobic003G401100 Sobic010G053800 Sobic010G053800 Sobic001G201400--Sobic010G053800 Sobic001G201400--Sobic006G252700 Sobic001G201400--Sobic009G257800 Sobic001G201400--Sobic001G466700 Sobic001G466700--Sobic006G252700 Sobic001G466700--Sobic003G081000 Sobic001G466700--Sobic001G143500 Sobic002G388200 Sobic002G388200 Sobic001G466700--Sobic002G388200 Sobic001G466700--Sobic001G371200 Sobic001G466700--Sobic004G021100 Sobic007G119200 Sobic007G119200 Sobic001G466700--Sobic007G119200 Sobic001G466700--Sobic009G056800 Sobic001G466700--Sobic007G118200 Sobic003G401000 Sobic003G401000 Sobic009G257800--Sobic003G401000 Sobic006G267300 Sobic006G267300 Sobic009G257800--Sobic006G267300 Sobic009G257800--Sobic003G081000 Sobic009G257800--Sobic004G283000 Sobic009G257800--Sobic004G057400 Sobic002G090800 Sobic002G090800 Sobic009G257800--Sobic002G090800 Sobic009G257800--Sobic006G252700 Sobic004G325400 Sobic004G325400 Sobic009G257800--Sobic004G325400 Sobic009G257800--Sobic001G090400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.