Gene annotation
Transcriptome id Sobic.001G201400.2,Sobic.001G201400.3
Synonym RH8, Sb01g017760, ATRH8
Functional annotation -
UniProt C5WWE1
Pfam PF00271 PF00270
Panther DB PTHR24031 PTHR24031:SF254
NCBI CDD -
KEGG Orthology K12614; DDX6, RCK, ATP-dependent RNA helicase DDX6/DHH1
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G00660 : RNAhelicase-like 8
RAP-DB (Rice) LOC_Os04g45040.3,LOC_Os04g45040.2 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a020984 , Zm00025a006405 , Zm00025a017479
Brachypodium KQJ97355
Barley HORVU1Hr1G046020.5 , HORVU1Hr1G046020.4 , HORVU1Hr1G046020.7 , HORVU1Hr1G046020.6 , HORVU1Hr1G046020.3 , HORVU1Hr1G046020.2 , HORVU1Hr1G046020.1
Wheat TraesCS1B02G189900 , TraesCS1D02G164500 , TraesCS1A02G174600
Populus -


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cDNA sequences
Sobic.001G201400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G201500 - K12614: DDX6, RCK, ATP-dependent RNA helicase DDX6/DHH1
2 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
3 Sobic.003G187500 ATP-binding region, ATPase-like domain containing protein, expressed -
4 Sobic.008G131000 domain of unknown function family protein, expressed -
5 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
6 Sobic.010G053800 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
7 Sobic.006G252700 protein kinase domain containing protein, expressed -
8 Sobic.009G257800 sodium/calcium exchanger protein, putative, expressed K07300: chaA, Ca2+:H+ antiporter
9 Sobic.001G466700 peptidyl-prolyl cis-trans isomerase, putative, expressed K10598: PPIL2, CYC4, peptidyl-prolyl cis-trans isomerase-like 2
10 Sobic.002G313500 protein kinase PKN/PRK1, effector, putative, expressed -
11 Sobic.006G278700 expressed protein -
12 Sobic.004G002400 expressed protein -
13 Sobic.001G371200 SAC3/GANP family protein, putative, expressed -
14 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24
15 Sobic.006G114500 per1-like family protein, putative, expressed -
16 Sobic.004G353200 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
17 Sobic.001G142100 WD domain, G-beta repeat domain containing protein, expressed K04536: guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
18 Sobic.004G185600 expressed protein -
19 Sobic.004G283000 nucleic acid binding protein, putative, expressed -
20 Sobic.005G216300 RNA recognition motif containing protein, expressed K12837: splicing factor U2AF 65 kDa subunit


Gene co-expression network
sample Sobic001G201400 Sobic001G201400 Sobic001G201500 Sobic001G201500 Sobic001G201400--Sobic001G201500 Sobic004G039600 Sobic004G039600 Sobic001G201400--Sobic004G039600 Sobic003G187500 Sobic003G187500 Sobic001G201400--Sobic003G187500 Sobic008G131000 Sobic008G131000 Sobic001G201400--Sobic008G131000 Sobic003G401100 Sobic003G401100 Sobic001G201400--Sobic003G401100 Sobic010G053800 Sobic010G053800 Sobic001G201400--Sobic010G053800 Sobic006G252700 Sobic006G252700 Sobic001G201400--Sobic006G252700 Sobic009G257800 Sobic009G257800 Sobic001G201400--Sobic009G257800 Sobic001G466700 Sobic001G466700 Sobic001G201400--Sobic001G466700 Sobic001G201500--Sobic001G201400 Sobic006G056600 Sobic006G056600 Sobic001G201500--Sobic006G056600 Sobic010G002400 Sobic010G002400 Sobic001G201500--Sobic010G002400 Sobic002G313500 Sobic002G313500 Sobic001G201500--Sobic002G313500 Sobic005G155700 Sobic005G155700 Sobic001G201500--Sobic005G155700 Sobic009G075800 Sobic009G075800 Sobic001G201500--Sobic009G075800 Sobic003G012200 Sobic003G012200 Sobic001G201500--Sobic003G012200 Sobic003G287100 Sobic003G287100 Sobic001G201500--Sobic003G287100 Sobic001G033500 Sobic001G033500 Sobic001G201500--Sobic001G033500 Sobic006G012500 Sobic006G012500 Sobic004G039600--Sobic006G012500 Sobic001G369000 Sobic001G369000 Sobic004G039600--Sobic001G369000 Sobic007G132100 Sobic007G132100 Sobic004G039600--Sobic007G132100 Sobic008G099800 Sobic008G099800 Sobic004G039600--Sobic008G099800 Sobic006G126100 Sobic006G126100 Sobic004G039600--Sobic006G126100 Sobic004G039600--Sobic010G053800 Sobic006G131000 Sobic006G131000 Sobic004G039600--Sobic006G131000 Sobic001G534800 Sobic001G534800 Sobic004G039600--Sobic001G534800 Sobic007G120500 Sobic007G120500 Sobic004G039600--Sobic007G120500 Sobic003G187500--Sobic010G053800 Sobic004G072100 Sobic004G072100 Sobic003G187500--Sobic004G072100 Sobic003G187500--Sobic007G132100 Sobic002G310200 Sobic002G310200 Sobic003G187500--Sobic002G310200 Sobic010G275500 Sobic010G275500 Sobic003G187500--Sobic010G275500 Sobic008G047800 Sobic008G047800 Sobic003G187500--Sobic008G047800 Sobic003G187500--Sobic004G039600 Sobic003G187500--Sobic006G012500 Sobic010G236400 Sobic010G236400 Sobic003G187500--Sobic010G236400 Sobic008G131000--Sobic010G236400 Sobic008G083000 Sobic008G083000 Sobic008G131000--Sobic008G083000 Sobic003G266001 Sobic003G266001 Sobic008G131000--Sobic003G266001 Sobic002G396000 Sobic002G396000 Sobic008G131000--Sobic002G396000 Sobic010G209400 Sobic010G209400 Sobic008G131000--Sobic010G209400 Sobic008G131000--Sobic003G401100 Sobic006G194400 Sobic006G194400 Sobic008G131000--Sobic006G194400 Sobic004G084300 Sobic004G084300 Sobic008G131000--Sobic004G084300 Sobic008G131000--Sobic003G187500 Sobic003G401100--Sobic010G236400 Sobic003G401100--Sobic004G084300 Sobic001G281600 Sobic001G281600 Sobic003G401100--Sobic001G281600 Sobic003G081000 Sobic003G081000 Sobic003G401100--Sobic003G081000 Sobic007G027700 Sobic007G027700 Sobic003G401100--Sobic007G027700 Sobic001G143500 Sobic001G143500 Sobic003G401100--Sobic001G143500 Sobic007G000800 Sobic007G000800 Sobic003G401100--Sobic007G000800 Sobic004G274200 Sobic004G274200 Sobic003G401100--Sobic004G274200 Sobic003G241200 Sobic003G241200 Sobic003G401100--Sobic003G241200 Sobic010G053800--Sobic006G012500 Sobic010G053800--Sobic010G275500 Sobic010G053800--Sobic004G072100 Sobic001G155000 Sobic001G155000 Sobic010G053800--Sobic001G155000 Sobic010G053800--Sobic003G187500 Sobic010G053800--Sobic008G047800 Sobic010G116600 Sobic010G116600 Sobic010G053800--Sobic010G116600 Sobic006G163800 Sobic006G163800 Sobic010G053800--Sobic006G163800 Sobic010G053800--Sobic004G039600 Sobic006G252700--Sobic003G081000 Sobic006G252700--Sobic001G466700 Sobic004G350100 Sobic004G350100 Sobic006G252700--Sobic004G350100 Sobic006G252700--Sobic001G143500 Sobic007G118200 Sobic007G118200 Sobic006G252700--Sobic007G118200 Sobic006G278700 Sobic006G278700 Sobic006G252700--Sobic006G278700 Sobic006G252700--Sobic003G401100 Sobic003G439800 Sobic003G439800 Sobic006G252700--Sobic003G439800 Sobic002G034600 Sobic002G034600 Sobic006G252700--Sobic002G034600 Sobic003G401000 Sobic003G401000 Sobic009G257800--Sobic003G401000 Sobic006G267300 Sobic006G267300 Sobic009G257800--Sobic006G267300 Sobic009G257800--Sobic003G081000 Sobic004G283000 Sobic004G283000 Sobic009G257800--Sobic004G283000 Sobic004G057400 Sobic004G057400 Sobic009G257800--Sobic004G057400 Sobic002G090800 Sobic002G090800 Sobic009G257800--Sobic002G090800 Sobic009G257800--Sobic006G252700 Sobic004G325400 Sobic004G325400 Sobic009G257800--Sobic004G325400 Sobic001G090400 Sobic001G090400 Sobic009G257800--Sobic001G090400 Sobic001G466700--Sobic006G252700 Sobic001G466700--Sobic003G081000 Sobic001G466700--Sobic001G143500 Sobic002G388200 Sobic002G388200 Sobic001G466700--Sobic002G388200 Sobic001G371200 Sobic001G371200 Sobic001G466700--Sobic001G371200 Sobic004G021100 Sobic004G021100 Sobic001G466700--Sobic004G021100 Sobic007G119200 Sobic007G119200 Sobic001G466700--Sobic007G119200 Sobic009G056800 Sobic009G056800 Sobic001G466700--Sobic009G056800 Sobic001G466700--Sobic007G118200
Octagon: transcription factors


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