Gene annotation
Transcriptome id Sobic.001G142100.1
Synonym Sb01g012370, ELK4, ATAGB1, AGB1
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5WQA4
Pfam PF00400
Panther DB PTHR19850
NCBI CDD KOG0286; G-protein beta subunit
KEGG Orthology K04536; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
Gene Ontology GO:0005515; protein binding GO:0007165signal transduction


Orthologs (automatic annotation)
TAIR AT4G34460 : GTP binding protein beta 1
RAP-DB (Rice) LOC_Os03g46650.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a007522
Brachypodium KQK13840
Barley HORVU4Hr1G003110.1 , HORVU4Hr1G003110.3 , HORVU4Hr1G003110.2
Wheat TraesCS4A02G294000 , TraesCS4B02G019900 , TraesCS4D02G017800
Populus -


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cDNA sequences
Sobic.001G142100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G004200 GIL1, putative, expressed -
2 Sobic.008G131000 domain of unknown function family protein, expressed -
3 Sobic.003G187500 ATP-binding region, ATPase-like domain containing protein, expressed -
4 Sobic.005G216300 RNA recognition motif containing protein, expressed K12837: splicing factor U2AF 65 kDa subunit
5 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
6 Sobic.006G252700 protein kinase domain containing protein, expressed -
7 Sobic.003G439800 growth inhibition and differentiation-related protein 88, putative, expressed -
8 Sobic.006G114500 per1-like family protein, putative, expressed -
9 Sobic.003G114700 NAK-like ser/thr protein kinase, putative, expressed -
10 Sobic.004G158700 copine, putative, expressed -
11 Sobic.002G111600 expressed protein -
12 Sobic.001G201400 - K12614: DDX6, RCK, ATP-dependent RNA helicase DDX6/DHH1
13 Sobic.006G278700 expressed protein -
14 Sobic.005G084100 Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(PubMedID : 31721651)@inactive receptor kinase At1g27190 precursor, putative, expressed -
15 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
16 Sobic.004G339100 endoribonuclease, putative, expressed K06927: diphthine-ammonia ligase
17 Sobic.005G133500 expressed protein -
18 Sobic.007G225100 ZOS8-09 - C2H2 zinc finger protein, expressed -
19 Sobic.007G031600 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
20 Sobic.006G138000 expressed protein -


Gene co-expression network
sample Sobic001G142100 Sobic001G142100 Sobic005G004200 Sobic005G004200 Sobic001G142100--Sobic005G004200 Sobic008G131000 Sobic008G131000 Sobic001G142100--Sobic008G131000 Sobic003G187500 Sobic003G187500 Sobic001G142100--Sobic003G187500 Sobic005G216300 Sobic005G216300 Sobic001G142100--Sobic005G216300 Sobic003G401100 Sobic003G401100 Sobic001G142100--Sobic003G401100 Sobic006G252700 Sobic006G252700 Sobic001G142100--Sobic006G252700 Sobic003G439800 Sobic003G439800 Sobic001G142100--Sobic003G439800 Sobic006G114500 Sobic006G114500 Sobic001G142100--Sobic006G114500 Sobic003G114700 Sobic003G114700 Sobic001G142100--Sobic003G114700 Sobic005G004200--Sobic001G142100 Sobic010G018700 Sobic010G018700 Sobic005G004200--Sobic010G018700 Sobic008G004400 Sobic008G004400 Sobic005G004200--Sobic008G004400 Sobic004G348300 Sobic004G348300 Sobic005G004200--Sobic004G348300 Sobic007G225100 Sobic007G225100 Sobic005G004200--Sobic007G225100 Sobic004G339100 Sobic004G339100 Sobic005G004200--Sobic004G339100 Sobic002G111600 Sobic002G111600 Sobic005G004200--Sobic002G111600 Sobic001G356600 Sobic001G356600 Sobic005G004200--Sobic001G356600 Sobic009G179700 Sobic009G179700 Sobic005G004200--Sobic009G179700 Sobic010G236400 Sobic010G236400 Sobic008G131000--Sobic010G236400 Sobic008G083000 Sobic008G083000 Sobic008G131000--Sobic008G083000 Sobic003G266001 Sobic003G266001 Sobic008G131000--Sobic003G266001 Sobic002G396000 Sobic002G396000 Sobic008G131000--Sobic002G396000 Sobic010G209400 Sobic010G209400 Sobic008G131000--Sobic010G209400 Sobic008G131000--Sobic003G401100 Sobic006G194400 Sobic006G194400 Sobic008G131000--Sobic006G194400 Sobic004G084300 Sobic004G084300 Sobic008G131000--Sobic004G084300 Sobic008G131000--Sobic003G187500 Sobic010G053800 Sobic010G053800 Sobic003G187500--Sobic010G053800 Sobic004G072100 Sobic004G072100 Sobic003G187500--Sobic004G072100 Sobic007G132100 Sobic007G132100 Sobic003G187500--Sobic007G132100 Sobic002G310200 Sobic002G310200 Sobic003G187500--Sobic002G310200 Sobic010G275500 Sobic010G275500 Sobic003G187500--Sobic010G275500 Sobic008G047800 Sobic008G047800 Sobic003G187500--Sobic008G047800 Sobic004G039600 Sobic004G039600 Sobic003G187500--Sobic004G039600 Sobic006G012500 Sobic006G012500 Sobic003G187500--Sobic006G012500 Sobic003G187500--Sobic010G236400 Sobic003G099300 Sobic003G099300 Sobic005G216300--Sobic003G099300 Sobic007G027700 Sobic007G027700 Sobic005G216300--Sobic007G027700 Sobic005G216300--Sobic004G039600 Sobic001G369000 Sobic001G369000 Sobic005G216300--Sobic001G369000 Sobic001G335900 Sobic001G335900 Sobic005G216300--Sobic001G335900 Sobic001G426600 Sobic001G426600 Sobic005G216300--Sobic001G426600 Sobic005G216300--Sobic001G142100 Sobic003G126600 Sobic003G126600 Sobic005G216300--Sobic003G126600 Sobic006G208500 Sobic006G208500 Sobic005G216300--Sobic006G208500 Sobic003G401100--Sobic010G236400 Sobic003G401100--Sobic004G084300 Sobic001G281600 Sobic001G281600 Sobic003G401100--Sobic001G281600 Sobic003G081000 Sobic003G081000 Sobic003G401100--Sobic003G081000 Sobic003G401100--Sobic007G027700 Sobic001G143500 Sobic001G143500 Sobic003G401100--Sobic001G143500 Sobic007G000800 Sobic007G000800 Sobic003G401100--Sobic007G000800 Sobic004G274200 Sobic004G274200 Sobic003G401100--Sobic004G274200 Sobic003G241200 Sobic003G241200 Sobic003G401100--Sobic003G241200 Sobic006G252700--Sobic003G081000 Sobic001G466700 Sobic001G466700 Sobic006G252700--Sobic001G466700 Sobic004G350100 Sobic004G350100 Sobic006G252700--Sobic004G350100 Sobic006G252700--Sobic001G143500 Sobic007G118200 Sobic007G118200 Sobic006G252700--Sobic007G118200 Sobic006G278700 Sobic006G278700 Sobic006G252700--Sobic006G278700 Sobic006G252700--Sobic003G401100 Sobic006G252700--Sobic003G439800 Sobic002G034600 Sobic002G034600 Sobic006G252700--Sobic002G034600 Sobic003G439800--Sobic001G143500 Sobic003G439800--Sobic006G252700 Sobic003G439800--Sobic006G278700 Sobic003G439800--Sobic010G018700 Sobic002G268400 Sobic002G268400 Sobic003G439800--Sobic002G268400 Sobic003G439800--Sobic001G142100 Sobic009G058500 Sobic009G058500 Sobic003G439800--Sobic009G058500 Sobic003G439800--Sobic003G401100 Sobic010G279700 Sobic010G279700 Sobic003G439800--Sobic010G279700 Sobic006G114500--Sobic001G142100 Sobic002G313500 Sobic002G313500 Sobic006G114500--Sobic002G313500 Sobic006G114500--Sobic004G350100 Sobic004G021100 Sobic004G021100 Sobic006G114500--Sobic004G021100 Sobic006G114500--Sobic004G339100 Sobic004G205600 Sobic004G205600 Sobic006G114500--Sobic004G205600 Sobic001G201400 Sobic001G201400 Sobic006G114500--Sobic001G201400 Sobic006G114500--Sobic001G466700 Sobic009G257800 Sobic009G257800 Sobic006G114500--Sobic009G257800 Sobic003G114700--Sobic006G252700 Sobic003G114700--Sobic006G278700 Sobic003G114700--Sobic004G350100 Sobic003G114700--Sobic001G142100 Sobic003G114700--Sobic008G004400 Sobic003G114700--Sobic001G143500 Sobic008G112800 Sobic008G112800 Sobic003G114700--Sobic008G112800 Sobic003G114700--Sobic005G004200 Sobic003G114700--Sobic001G466700
Octagon: transcription factors


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