Gene annotation
Transcriptome id Sobic.004G158700.1
Synonym Sb04g021150
Functional annotation copine, putative, expressed
UniProt A0A194YPY2
Pfam PF00168 PF07002
Panther DB PTHR10857 PTHR10857:SF26
NCBI CDD KOG1327; Copine
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G61910 : DCD (Development and Cell Death) domain protein
RAP-DB (Rice) LOC_Os02g32160.1 : copine, putative, expressed
MaizeGDB (Corn) Zm00025a020455
Brachypodium PNT68717 , KQJ99635 , KQJ99634 , KQJ99633 , KQJ99632
Barley HORVU6Hr1G041140.14 , HORVU6Hr1G041140.15 , HORVU6Hr1G041140.16 , HORVU6Hr1G041140.17 , HORVU6Hr1G041140.10 , HORVU6Hr1G041140.11 , HORVU6Hr1G041140.12 , HORVU6Hr1G041140.13 , HORVU6Hr1G041140.18 , HORVU6Hr1G041140.19 , HORVU6Hr1G041140.29 , HORVU6Hr1G041140.28 , HORVU6Hr1G041140.21 , HORVU6Hr1G041140.20 , HORVU6Hr1G041140.23 , HORVU6Hr1G041140.22 , HORVU6Hr1G041140.25 , HORVU6Hr1G041140.24 , HORVU6Hr1G041140.27 , HORVU6Hr1G041140.26 , HORVU6Hr1G041140.8 , HORVU6Hr1G041140.9 , HORVU6Hr1G041140.6 , HORVU6Hr1G041140.7 , HORVU6Hr1G041140.4 , HORVU6Hr1G041140.5 , HORVU6Hr1G041140.2 , HORVU6Hr1G041140.3 , HORVU6Hr1G041140.1 , HORVU6Hr1G041140.34 , HORVU6Hr1G041140.32 , HORVU6Hr1G041140.33 , HORVU6Hr1G041140.30 , HORVU6Hr1G041140.31
Wheat TraesCS6B02G235200 , TraesCS6A02G189800 , TraesCS6D02G176800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G187500 ATP-binding region, ATPase-like domain containing protein, expressed -
2 Sobic.001G142100 WD domain, G-beta repeat domain containing protein, expressed K04536: guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
3 Sobic.004G339100 endoribonuclease, putative, expressed K06927: diphthine-ammonia ligase
4 Sobic.001G201400 - K12614: DDX6, RCK, ATP-dependent RNA helicase DDX6/DHH1
5 Sobic.006G102100 ZOS3-17 - C2H2 zinc finger protein, expressed K12827: SF3A3, SAP61, splicing factor 3A subunit 3
6 Sobic.001G000200 TBC domain containing protein, expressed -
7 Sobic.009G010600 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
8 Sobic.008G131000 domain of unknown function family protein, expressed -
9 Sobic.001G071400 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
10 Sobic.001G534800 Putative ortholog gene associated with awn presence/absence in wheat(PubMedID : 25237112)@adapitin protein, putative, expressed K11824: AP-2 complex subunit alpha
11 Sobic.001G394600 expressed protein -
12 Sobic.001G291000 disease resistance protein RPM1, putative, expressed K13457: RPM1, disease resistance protein RPM1
13 Sobic.004G135400 expressed protein -
14 Sobic.003G141500 CGMC_GSK.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K03083: glycogen synthase kinase 3 beta
15 Sobic.004G329400 formin, putative, expressed -
16 Sobic.009G047200 protein kinase domain containing protein, expressed -
17 Sobic.003G164200 cullin, putative, expressed K03347: CUL1, cullin 1
18 Sobic.010G147833 - -
19 Sobic.001G426600 SH3 domain containing protein, expressed -
20 Sobic.008G083000 ZOS12-03 - C2H2 zinc finger protein, expressed -


Gene co-expression network
sample Sobic004G158700 Sobic004G158700 Sobic003G187500 Sobic003G187500 Sobic004G158700--Sobic003G187500 Sobic001G142100 Sobic001G142100 Sobic004G158700--Sobic001G142100 Sobic004G339100 Sobic004G339100 Sobic004G158700--Sobic004G339100 Sobic001G201400 Sobic001G201400 Sobic004G158700--Sobic001G201400 Sobic006G102100 Sobic006G102100 Sobic004G158700--Sobic006G102100 Sobic001G000200 Sobic001G000200 Sobic004G158700--Sobic001G000200 Sobic009G010600 Sobic009G010600 Sobic004G158700--Sobic009G010600 Sobic008G131000 Sobic008G131000 Sobic004G158700--Sobic008G131000 Sobic001G071400 Sobic001G071400 Sobic004G158700--Sobic001G071400 Sobic010G053800 Sobic010G053800 Sobic003G187500--Sobic010G053800 Sobic004G072100 Sobic004G072100 Sobic003G187500--Sobic004G072100 Sobic007G132100 Sobic007G132100 Sobic003G187500--Sobic007G132100 Sobic002G310200 Sobic002G310200 Sobic003G187500--Sobic002G310200 Sobic010G275500 Sobic010G275500 Sobic003G187500--Sobic010G275500 Sobic008G047800 Sobic008G047800 Sobic003G187500--Sobic008G047800 Sobic004G039600 Sobic004G039600 Sobic003G187500--Sobic004G039600 Sobic006G012500 Sobic006G012500 Sobic003G187500--Sobic006G012500 Sobic010G236400 Sobic010G236400 Sobic003G187500--Sobic010G236400 Sobic005G004200 Sobic005G004200 Sobic001G142100--Sobic005G004200 Sobic001G142100--Sobic008G131000 Sobic001G142100--Sobic003G187500 Sobic005G216300 Sobic005G216300 Sobic001G142100--Sobic005G216300 Sobic003G401100 Sobic003G401100 Sobic001G142100--Sobic003G401100 Sobic006G252700 Sobic006G252700 Sobic001G142100--Sobic006G252700 Sobic003G439800 Sobic003G439800 Sobic001G142100--Sobic003G439800 Sobic006G114500 Sobic006G114500 Sobic001G142100--Sobic006G114500 Sobic003G114700 Sobic003G114700 Sobic001G142100--Sobic003G114700 Sobic004G113400 Sobic004G113400 Sobic004G339100--Sobic004G113400 Sobic004G339100--Sobic009G010600 Sobic004G329400 Sobic004G329400 Sobic004G339100--Sobic004G329400 Sobic007G024700 Sobic007G024700 Sobic004G339100--Sobic007G024700 Sobic003G287100 Sobic003G287100 Sobic004G339100--Sobic003G287100 Sobic008G099800 Sobic008G099800 Sobic004G339100--Sobic008G099800 Sobic001G534800 Sobic001G534800 Sobic004G339100--Sobic001G534800 Sobic004G135400 Sobic004G135400 Sobic004G339100--Sobic004G135400 Sobic004G277200 Sobic004G277200 Sobic004G339100--Sobic004G277200 Sobic001G201500 Sobic001G201500 Sobic001G201400--Sobic001G201500 Sobic001G201400--Sobic004G039600 Sobic001G201400--Sobic003G187500 Sobic001G201400--Sobic008G131000 Sobic001G201400--Sobic003G401100 Sobic001G201400--Sobic010G053800 Sobic001G201400--Sobic006G252700 Sobic009G257800 Sobic009G257800 Sobic001G201400--Sobic009G257800 Sobic001G466700 Sobic001G466700 Sobic001G201400--Sobic001G466700 Sobic006G102100--Sobic008G131000 Sobic003G258900 Sobic003G258900 Sobic006G102100--Sobic003G258900 Sobic006G102100--Sobic001G201400 Sobic006G102100--Sobic004G158700 Sobic010G209400 Sobic010G209400 Sobic006G102100--Sobic010G209400 Sobic006G102100--Sobic003G187500 Sobic006G049600 Sobic006G049600 Sobic006G102100--Sobic006G049600 Sobic001G081000 Sobic001G081000 Sobic006G102100--Sobic001G081000 Sobic002G275600 Sobic002G275600 Sobic006G102100--Sobic002G275600 Sobic009G199200 Sobic009G199200 Sobic001G000200--Sobic009G199200 Sobic010G205800 Sobic010G205800 Sobic001G000200--Sobic010G205800 Sobic006G237400 Sobic006G237400 Sobic001G000200--Sobic006G237400 Sobic001G253700 Sobic001G253700 Sobic001G000200--Sobic001G253700 Sobic008G004600 Sobic008G004600 Sobic001G000200--Sobic008G004600 Sobic003G233600 Sobic003G233600 Sobic001G000200--Sobic003G233600 Sobic001G291000 Sobic001G291000 Sobic001G000200--Sobic001G291000 Sobic001G079200 Sobic001G079200 Sobic001G000200--Sobic001G079200 Sobic001G000200--Sobic001G071400 Sobic009G010600--Sobic004G113400 Sobic001G474600 Sobic001G474600 Sobic009G010600--Sobic001G474600 Sobic001G178700 Sobic001G178700 Sobic009G010600--Sobic001G178700 Sobic001G058700 Sobic001G058700 Sobic009G010600--Sobic001G058700 Sobic001G281100 Sobic001G281100 Sobic009G010600--Sobic001G281100 Sobic004G355000 Sobic004G355000 Sobic009G010600--Sobic004G355000 Sobic009G010600--Sobic004G329400 Sobic002G427050 Sobic002G427050 Sobic009G010600--Sobic002G427050 Sobic005G026200 Sobic005G026200 Sobic009G010600--Sobic005G026200 Sobic008G131000--Sobic010G236400 Sobic008G083000 Sobic008G083000 Sobic008G131000--Sobic008G083000 Sobic003G266001 Sobic003G266001 Sobic008G131000--Sobic003G266001 Sobic002G396000 Sobic002G396000 Sobic008G131000--Sobic002G396000 Sobic008G131000--Sobic010G209400 Sobic008G131000--Sobic003G401100 Sobic006G194400 Sobic006G194400 Sobic008G131000--Sobic006G194400 Sobic004G084300 Sobic004G084300 Sobic008G131000--Sobic004G084300 Sobic008G131000--Sobic003G187500 Sobic002G134200 Sobic002G134200 Sobic001G071400--Sobic002G134200 Sobic002G309600 Sobic002G309600 Sobic001G071400--Sobic002G309600 Sobic003G280800 Sobic003G280800 Sobic001G071400--Sobic003G280800 Sobic001G071400--Sobic008G047800 Sobic009G191000 Sobic009G191000 Sobic001G071400--Sobic009G191000 Sobic001G219600 Sobic001G219600 Sobic001G071400--Sobic001G219600 Sobic005G112300 Sobic005G112300 Sobic001G071400--Sobic005G112300 Sobic002G315200 Sobic002G315200 Sobic001G071400--Sobic002G315200 Sobic002G008900 Sobic002G008900 Sobic001G071400--Sobic002G008900
Octagon: transcription factors


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