Gene annotation
Transcriptome id Sobic.004G329400.2,Sobic.004G329400.5,Sobic.004G329400.4,Sobic.004G329400.1,Sobic.004G329400.3
Synonym
Functional annotation formin, putative, expressed
UniProt A0A194YSQ3 , A0A194YSV3 , A0A1Z5RQC9
Pfam PF10409 PF02181
Panther DB PTHR23213 PTHR23213:SF249
NCBI CDD KOG2283; Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G25050 : actin binding,Actin-binding FH2 (Formin Homology) protein
RAP-DB (Rice) LOC_Os04g17130.1,LOC_Os02g55150.1 : retrotransposon protein, putative, unclassified, expressed,formin, putative, expressed
MaizeGDB (Corn) Zm00025a022460
Brachypodium KQK01136 , KQK01137 , KQK01134 , KQK01135 , PNT69337 , PNT69336
Barley HORVU6Hr1G085030.6 , HORVU6Hr1G085030.7 , HORVU6Hr1G085030.4 , HORVU6Hr1G085030.5 , HORVU6Hr1G085030.2 , HORVU6Hr1G085030.3 , HORVU6Hr1G085030.1 , HORVU6Hr1G085030.8 , HORVU6Hr1G085030.9 , HORVU6Hr1G085030.21 , HORVU6Hr1G085030.20 , HORVU6Hr1G085030.23 , HORVU6Hr1G085030.22 , HORVU6Hr1G085030.24 , HORVU6Hr1G085030.18 , HORVU6Hr1G085030.19 , HORVU6Hr1G085030.14 , HORVU6Hr1G085030.15 , HORVU6Hr1G085030.16 , HORVU6Hr1G085030.17 , HORVU6Hr1G085030.10 , HORVU6Hr1G085030.11 , HORVU6Hr1G085030.12 , HORVU6Hr1G085030.13 , HORVU6Hr1G085030.25
Wheat TraesCS6B02G389300 , TraesCS6D02G339300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G113400 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
2 Sobic.009G027300 MYB family transcription factor, putative, expressed K04650: NCOR1, nuclear receptor co-repressor 1
3 Sobic.005G157000 expressed protein -
4 Sobic.001G058700 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
5 Sobic.004G355000 SAC9, putative, expressed -
6 Sobic.004G269200 protein kinase, putative, expressed K18670: dual specificity protein kinase YAK1
7 Sobic.007G024700 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
8 Sobic.007G172400 AAA-type ATPase family protein, putative, expressed K13338: peroxin-1
9 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
10 Sobic.002G419800 structural constituent of ribosome, putative, expressed -
11 Sobic.009G010600 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
12 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
13 Sobic.009G047200 protein kinase domain containing protein, expressed -
14 Sobic.001G117200 AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
15 Sobic.007G163100 expressed protein K14972: PAXIP1, PAX-interacting protein 1
16 Sobic.002G430000 expressed protein K08518: STXBP5, syntaxin-binding protein 5
17 Sobic.003G422500 expressed protein -
18 Sobic.010G112000 expressed protein K17906: autophagy-related protein 2
19 Sobic.001G178700 NBS-LRR disease resistance protein, putative, expressed -
20 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2


Gene co-expression network
sample Sobic004G329400 Sobic004G329400 Sobic004G113400 Sobic004G113400 Sobic004G329400--Sobic004G113400 Sobic009G027300 Sobic009G027300 Sobic004G329400--Sobic009G027300 Sobic005G157000 Sobic005G157000 Sobic004G329400--Sobic005G157000 Sobic001G058700 Sobic001G058700 Sobic004G329400--Sobic001G058700 Sobic004G355000 Sobic004G355000 Sobic004G329400--Sobic004G355000 Sobic004G269200 Sobic004G269200 Sobic004G329400--Sobic004G269200 Sobic007G024700 Sobic007G024700 Sobic004G329400--Sobic007G024700 Sobic007G172400 Sobic007G172400 Sobic004G329400--Sobic007G172400 Sobic003G408600 Sobic003G408600 Sobic004G329400--Sobic003G408600 Sobic009G010600 Sobic009G010600 Sobic004G113400--Sobic009G010600 Sobic004G113400--Sobic003G408600 Sobic004G113400--Sobic004G329400 Sobic004G113400--Sobic001G058700 Sobic008G099800 Sobic008G099800 Sobic004G113400--Sobic008G099800 Sobic001G178700 Sobic001G178700 Sobic004G113400--Sobic001G178700 Sobic001G117200 Sobic001G117200 Sobic004G113400--Sobic001G117200 Sobic001G534800 Sobic001G534800 Sobic004G113400--Sobic001G534800 Sobic002G430000 Sobic002G430000 Sobic004G113400--Sobic002G430000 Sobic008G132600 Sobic008G132600 Sobic009G027300--Sobic008G132600 Sobic002G045600 Sobic002G045600 Sobic009G027300--Sobic002G045600 Sobic004G331100 Sobic004G331100 Sobic009G027300--Sobic004G331100 Sobic003G422500 Sobic003G422500 Sobic009G027300--Sobic003G422500 Sobic002G008900 Sobic002G008900 Sobic009G027300--Sobic002G008900 Sobic003G101400 Sobic003G101400 Sobic009G027300--Sobic003G101400 Sobic001G050200 Sobic001G050200 Sobic009G027300--Sobic001G050200 Sobic009G191000 Sobic009G191000 Sobic009G027300--Sobic009G191000 Sobic007G075400 Sobic007G075400 Sobic009G027300--Sobic007G075400 Sobic005G157000--Sobic004G329400 Sobic001G207400 Sobic001G207400 Sobic005G157000--Sobic001G207400 Sobic005G157000--Sobic004G355000 Sobic005G157000--Sobic007G024700 Sobic005G157000--Sobic004G269200 Sobic002G270500 Sobic002G270500 Sobic005G157000--Sobic002G270500 Sobic005G157000--Sobic004G113400 Sobic009G094300 Sobic009G094300 Sobic005G157000--Sobic009G094300 Sobic005G157000--Sobic002G430000 Sobic001G058700--Sobic003G408600 Sobic001G058700--Sobic007G172400 Sobic001G050600 Sobic001G050600 Sobic001G058700--Sobic001G050600 Sobic007G062800 Sobic007G062800 Sobic001G058700--Sobic007G062800 Sobic001G540400 Sobic001G540400 Sobic001G058700--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic001G058700--Sobic005G008800 Sobic004G347400 Sobic004G347400 Sobic001G058700--Sobic004G347400 Sobic005G028600 Sobic005G028600 Sobic001G058700--Sobic005G028600 Sobic001G219900 Sobic001G219900 Sobic001G058700--Sobic001G219900 Sobic004G355000--Sobic001G207400 Sobic004G355000--Sobic002G430000 Sobic001G248300 Sobic001G248300 Sobic004G355000--Sobic001G248300 Sobic005G001000 Sobic005G001000 Sobic004G355000--Sobic005G001000 Sobic004G355000--Sobic004G329400 Sobic004G355000--Sobic005G157000 Sobic003G322700 Sobic003G322700 Sobic004G355000--Sobic003G322700 Sobic004G355000--Sobic004G113400 Sobic004G355000--Sobic009G010600 Sobic004G269200--Sobic009G027300 Sobic004G269200--Sobic001G050200 Sobic001G281100 Sobic001G281100 Sobic004G269200--Sobic001G281100 Sobic004G269200--Sobic004G329400 Sobic004G269200--Sobic004G331100 Sobic004G269200--Sobic003G101400 Sobic004G004300 Sobic004G004300 Sobic004G269200--Sobic004G004300 Sobic004G269200--Sobic005G157000 Sobic004G269200--Sobic001G534800 Sobic007G024700--Sobic002G270500 Sobic007G024700--Sobic009G094300 Sobic009G249200 Sobic009G249200 Sobic007G024700--Sobic009G249200 Sobic004G052900 Sobic004G052900 Sobic007G024700--Sobic004G052900 Sobic001G270400 Sobic001G270400 Sobic007G024700--Sobic001G270400 Sobic004G264400 Sobic004G264400 Sobic007G024700--Sobic004G264400 Sobic003G305200 Sobic003G305200 Sobic007G024700--Sobic003G305200 Sobic002G132000 Sobic002G132000 Sobic007G024700--Sobic002G132000 Sobic002G419800 Sobic002G419800 Sobic007G024700--Sobic002G419800 Sobic007G172400--Sobic001G058700 Sobic002G071500 Sobic002G071500 Sobic007G172400--Sobic002G071500 Sobic007G172400--Sobic001G050600 Sobic007G172400--Sobic004G347400 Sobic007G172400--Sobic002G419800 Sobic007G172400--Sobic001G219900 Sobic007G172400--Sobic004G113400 Sobic001G474600 Sobic001G474600 Sobic007G172400--Sobic001G474600 Sobic007G172400--Sobic003G408600 Sobic003G408600--Sobic001G540400 Sobic003G408600--Sobic005G008800 Sobic002G397500 Sobic002G397500 Sobic003G408600--Sobic002G397500 Sobic005G112300 Sobic005G112300 Sobic003G408600--Sobic005G112300 Sobic007G163100 Sobic007G163100 Sobic003G408600--Sobic007G163100 Sobic010G112100 Sobic010G112100 Sobic003G408600--Sobic010G112100 Sobic003G408600--Sobic001G058700 Sobic003G408600--Sobic002G071500 Sobic003G408600--Sobic002G045600
Octagon: transcription factors


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