Gene annotation
Transcriptome id Sobic.006G182200.1,Sobic.006G182200.3,Sobic.006G182200.2
Synonym Sb06g025670
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1B6PMN0
Pfam PF00400
Panther DB PTHR19857
NCBI CDD KOG0296; Angio-associated migratory cell protein (contains WD40 repeats)
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G71840 : transducin family protein / WD-40 repeat family protein
RAP-DB (Rice) LOC_Os03g48090.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a039038 , Zm00025a025809 , Zm00025a039040
Brachypodium KQJ84321 , KQK17040 , KQK11861 , KQK14814
Barley HORVU3Hr1G013230.2 , HORVU3Hr1G013230.3 , HORVU3Hr1G013230.1 , HORVU3Hr1G013230.6 , HORVU3Hr1G013230.7 , HORVU3Hr1G013230.4 , HORVU3Hr1G013230.5
Wheat TraesCS1A02G358200 , TraesCS1D02G363000 , TraesCS2B02G148600 , TraesCS2B02G148600
Populus -


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cDNA sequences
Sobic.006G182200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
2 Sobic.001G473600 ZOS5-06 - C2H2 zinc finger protein, expressed -
3 Sobic.001G016000 expressed protein K07759: poly(ADP-ribose) glycohydrolase
4 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
5 Sobic.001G360200 novel plant SNARE 11, putative, expressed K08494: novel plant SNARE
6 Sobic.010G116600 FHA domain containing protein, putative, expressed -
7 Sobic.001G466700 peptidyl-prolyl cis-trans isomerase, putative, expressed K10598: PPIL2, CYC4, peptidyl-prolyl cis-trans isomerase-like 2
8 Sobic.004G339100 endoribonuclease, putative, expressed K06927: diphthine-ammonia ligase
9 Sobic.002G283600 AGAP005770-PA, putative, expressed -
10 Sobic.002G034600 zinc ion binding protein, putative, expressed -
11 Sobic.001G088100 transcriptional adaptor, putative, expressed K11314: TADA2A, transcriptional adapter 2-alpha
12 Sobic.004G264400 TBC domain containing protein, expressed -
13 Sobic.007G119200 intracellular protein transport protein USO1-related, putative, expressed -
14 Sobic.006G245400 -(PubMedID : 34525227)@NADPH reductase, putative, expressed K00327: NADPH-ferrihemoprotein reductase
15 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
16 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
17 Sobic.003G352200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
18 Sobic.007G039400 tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
19 Sobic.006G200600 expressed protein -
20 Sobic.001G008200 expressed protein K13211: GC-rich sequence DNA-binding factor


Gene co-expression network
sample Sobic006G182200 Sobic006G182200 Sobic004G274200 Sobic004G274200 Sobic006G182200--Sobic004G274200 Sobic001G473600 Sobic001G473600 Sobic006G182200--Sobic001G473600 Sobic001G016000 Sobic001G016000 Sobic006G182200--Sobic001G016000 Sobic004G353000 Sobic004G353000 Sobic006G182200--Sobic004G353000 Sobic001G360200 Sobic001G360200 Sobic006G182200--Sobic001G360200 Sobic010G116600 Sobic010G116600 Sobic006G182200--Sobic010G116600 Sobic001G466700 Sobic001G466700 Sobic006G182200--Sobic001G466700 Sobic004G339100 Sobic004G339100 Sobic006G182200--Sobic004G339100 Sobic002G283600 Sobic002G283600 Sobic006G182200--Sobic002G283600 Sobic008G047800 Sobic008G047800 Sobic004G274200--Sobic008G047800 Sobic010G236400 Sobic010G236400 Sobic004G274200--Sobic010G236400 Sobic004G146500 Sobic004G146500 Sobic004G274200--Sobic004G146500 Sobic004G021100 Sobic004G021100 Sobic004G274200--Sobic004G021100 Sobic008G112800 Sobic008G112800 Sobic004G274200--Sobic008G112800 Sobic003G352200 Sobic003G352200 Sobic004G274200--Sobic003G352200 Sobic009G044800 Sobic009G044800 Sobic004G274200--Sobic009G044800 Sobic002G071500 Sobic002G071500 Sobic004G274200--Sobic002G071500 Sobic001G114000 Sobic001G114000 Sobic004G274200--Sobic001G114000 Sobic002G034600 Sobic002G034600 Sobic001G473600--Sobic002G034600 Sobic001G473600--Sobic003G352200 Sobic007G046200 Sobic007G046200 Sobic001G473600--Sobic007G046200 Sobic001G395100 Sobic001G395100 Sobic001G473600--Sobic001G395100 Sobic001G473600--Sobic004G353000 Sobic007G084100 Sobic007G084100 Sobic001G473600--Sobic007G084100 Sobic001G088100 Sobic001G088100 Sobic001G473600--Sobic001G088100 Sobic007G041300 Sobic007G041300 Sobic001G473600--Sobic007G041300 Sobic007G075900 Sobic007G075900 Sobic001G473600--Sobic007G075900 Sobic001G016000--Sobic002G034600 Sobic001G016000--Sobic010G236400 Sobic003G397800 Sobic003G397800 Sobic001G016000--Sobic003G397800 Sobic001G409600 Sobic001G409600 Sobic001G016000--Sobic001G409600 Sobic004G205600 Sobic004G205600 Sobic001G016000--Sobic004G205600 Sobic001G016000--Sobic004G274200 Sobic001G016000--Sobic002G283600 Sobic007G119200 Sobic007G119200 Sobic001G016000--Sobic007G119200 Sobic006G173100 Sobic006G173100 Sobic001G016000--Sobic006G173100 Sobic006G200700 Sobic006G200700 Sobic004G353000--Sobic006G200700 Sobic009G143800 Sobic009G143800 Sobic004G353000--Sobic009G143800 Sobic004G353000--Sobic010G116600 Sobic007G183900 Sobic007G183900 Sobic004G353000--Sobic007G183900 Sobic002G371300 Sobic002G371300 Sobic004G353000--Sobic002G371300 Sobic002G371700 Sobic002G371700 Sobic004G353000--Sobic002G371700 Sobic004G353000--Sobic009G044800 Sobic004G353000--Sobic001G473600 Sobic001G291800 Sobic001G291800 Sobic004G353000--Sobic001G291800 Sobic006G278700 Sobic006G278700 Sobic001G360200--Sobic006G278700 Sobic004G066200 Sobic004G066200 Sobic001G360200--Sobic004G066200 Sobic007G184500 Sobic007G184500 Sobic001G360200--Sobic007G184500 Sobic006G252700 Sobic006G252700 Sobic001G360200--Sobic006G252700 Sobic002G300700 Sobic002G300700 Sobic001G360200--Sobic002G300700 Sobic001G143500 Sobic001G143500 Sobic001G360200--Sobic001G143500 Sobic009G058500 Sobic009G058500 Sobic001G360200--Sobic009G058500 Sobic009G228700 Sobic009G228700 Sobic001G360200--Sobic009G228700 Sobic006G101700 Sobic006G101700 Sobic001G360200--Sobic006G101700 Sobic010G116600--Sobic002G071500 Sobic002G299700 Sobic002G299700 Sobic010G116600--Sobic002G299700 Sobic003G093800 Sobic003G093800 Sobic010G116600--Sobic003G093800 Sobic010G116600--Sobic009G044800 Sobic004G072100 Sobic004G072100 Sobic010G116600--Sobic004G072100 Sobic010G116600--Sobic010G236400 Sobic010G275500 Sobic010G275500 Sobic010G116600--Sobic010G275500 Sobic003G408600 Sobic003G408600 Sobic010G116600--Sobic003G408600 Sobic010G053800 Sobic010G053800 Sobic010G116600--Sobic010G053800 Sobic001G466700--Sobic006G252700 Sobic003G081000 Sobic003G081000 Sobic001G466700--Sobic003G081000 Sobic001G466700--Sobic001G143500 Sobic002G388200 Sobic002G388200 Sobic001G466700--Sobic002G388200 Sobic001G371200 Sobic001G371200 Sobic001G466700--Sobic001G371200 Sobic001G466700--Sobic004G021100 Sobic001G466700--Sobic007G119200 Sobic009G056800 Sobic009G056800 Sobic001G466700--Sobic009G056800 Sobic007G118200 Sobic007G118200 Sobic001G466700--Sobic007G118200 Sobic004G113400 Sobic004G113400 Sobic004G339100--Sobic004G113400 Sobic009G010600 Sobic009G010600 Sobic004G339100--Sobic009G010600 Sobic004G329400 Sobic004G329400 Sobic004G339100--Sobic004G329400 Sobic007G024700 Sobic007G024700 Sobic004G339100--Sobic007G024700 Sobic003G287100 Sobic003G287100 Sobic004G339100--Sobic003G287100 Sobic008G099800 Sobic008G099800 Sobic004G339100--Sobic008G099800 Sobic001G534800 Sobic001G534800 Sobic004G339100--Sobic001G534800 Sobic004G135400 Sobic004G135400 Sobic004G339100--Sobic004G135400 Sobic004G277200 Sobic004G277200 Sobic004G339100--Sobic004G277200 Sobic002G283600--Sobic001G016000 Sobic002G283600--Sobic002G034600 Sobic010G101800 Sobic010G101800 Sobic002G283600--Sobic010G101800 Sobic002G264200 Sobic002G264200 Sobic002G283600--Sobic002G264200 Sobic002G283600--Sobic010G053800 Sobic002G283600--Sobic001G409600 Sobic002G283600--Sobic007G119200 Sobic002G283600--Sobic003G397800 Sobic002G310200 Sobic002G310200 Sobic002G283600--Sobic002G310200
Octagon: transcription factors


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