Gene annotation
Transcriptome id Sobic.002G283600.1,Sobic.002G283600.2
Synonym Sb02g031620
Functional annotation AGAP005770-PA, putative, expressed
UniProt C5X702
Pfam PF12070
Panther DB PTHR21243
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003714transcription corepressor activity


Orthologs (automatic annotation)
TAIR AT3G03570 : Protein of unknown function (DUF3550/UPF0682)
RAP-DB (Rice) LOC_Os09g40000.1 : AGAP005770-PA, putative, expressed
MaizeGDB (Corn) Zm00025a047997
Brachypodium KQJ90409
Barley HORVU6Hr1G032750.4 , HORVU6Hr1G032750.1 , HORVU6Hr1G032750.3 , HORVU6Hr1G032750.2 , HORVU5Hr1G062040.3 , HORVU5Hr1G062040.2 , HORVU5Hr1G062040.1
Wheat TraesCS5B02G209900 , TraesCS5D02G218200 , TraesCS5D02G218200 , TraesCS5A02G213800 , TraesCS5A02G213800 , TraesCS5A02G213800
Populus -


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cDNA sequences
Sobic.002G283600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G016000 expressed protein K07759: poly(ADP-ribose) glycohydrolase
2 Sobic.002G034600 zinc ion binding protein, putative, expressed -
3 Sobic.010G101800 dynamin, putative, expressed K01528: dynamin 1/3
4 Sobic.002G264200 RNA recognition motif containing protein, expressed -
5 Sobic.010G053800 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
6 Sobic.001G409600 KH domain containing protein, putative, expressed K13095: splicing factor 1
7 Sobic.007G119200 intracellular protein transport protein USO1-related, putative, expressed -
8 Sobic.003G397800 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
9 Sobic.002G310200 expressed protein -
10 Sobic.001G109800 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
11 Sobic.001G466700 peptidyl-prolyl cis-trans isomerase, putative, expressed K10598: PPIL2, CYC4, peptidyl-prolyl cis-trans isomerase-like 2
12 Sobic.006G182200 WD domain, G-beta repeat domain containing protein, expressed -
13 Sobic.009G148300 expressed protein -
14 Sobic.004G146500 ataxin-2 related protein, putative, expressed -
15 Sobic.002G297200 ZOS9-19 - C2H2 zinc finger protein, expressed -
16 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24
17 Sobic.003G352200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
18 Sobic.009G257800 sodium/calcium exchanger protein, putative, expressed K07300: chaA, Ca2+:H+ antiporter
19 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
20 Sobic.003G332500 EAP30/Vps36 family domain containing protein, expressed K12190: VPS36, ESCRT-II complex subunit VPS36


Gene co-expression network
sample Sobic002G283600 Sobic002G283600 Sobic001G016000 Sobic001G016000 Sobic002G283600--Sobic001G016000 Sobic002G034600 Sobic002G034600 Sobic002G283600--Sobic002G034600 Sobic010G101800 Sobic010G101800 Sobic002G283600--Sobic010G101800 Sobic002G264200 Sobic002G264200 Sobic002G283600--Sobic002G264200 Sobic010G053800 Sobic010G053800 Sobic002G283600--Sobic010G053800 Sobic001G409600 Sobic001G409600 Sobic002G283600--Sobic001G409600 Sobic007G119200 Sobic007G119200 Sobic002G283600--Sobic007G119200 Sobic003G397800 Sobic003G397800 Sobic002G283600--Sobic003G397800 Sobic002G310200 Sobic002G310200 Sobic002G283600--Sobic002G310200 Sobic001G016000--Sobic002G034600 Sobic010G236400 Sobic010G236400 Sobic001G016000--Sobic010G236400 Sobic001G016000--Sobic003G397800 Sobic001G016000--Sobic001G409600 Sobic004G205600 Sobic004G205600 Sobic001G016000--Sobic004G205600 Sobic004G274200 Sobic004G274200 Sobic001G016000--Sobic004G274200 Sobic001G016000--Sobic002G283600 Sobic001G016000--Sobic007G119200 Sobic006G173100 Sobic006G173100 Sobic001G016000--Sobic006G173100 Sobic009G198100 Sobic009G198100 Sobic002G034600--Sobic009G198100 Sobic002G034600--Sobic007G119200 Sobic003G081000 Sobic003G081000 Sobic002G034600--Sobic003G081000 Sobic001G473600 Sobic001G473600 Sobic002G034600--Sobic001G473600 Sobic003G355000 Sobic003G355000 Sobic002G034600--Sobic003G355000 Sobic007G118200 Sobic007G118200 Sobic002G034600--Sobic007G118200 Sobic002G034600--Sobic002G264200 Sobic001G356600 Sobic001G356600 Sobic002G034600--Sobic001G356600 Sobic002G034600--Sobic010G236400 Sobic002G297200 Sobic002G297200 Sobic010G101800--Sobic002G297200 Sobic001G155000 Sobic001G155000 Sobic010G101800--Sobic001G155000 Sobic007G167500 Sobic007G167500 Sobic010G101800--Sobic007G167500 Sobic010G028800 Sobic010G028800 Sobic010G101800--Sobic010G028800 Sobic010G101800--Sobic003G397800 Sobic010G101800--Sobic001G409600 Sobic010G101800--Sobic002G310200 Sobic010G101800--Sobic010G053800 Sobic002G309600 Sobic002G309600 Sobic010G101800--Sobic002G309600 Sobic010G069100 Sobic010G069100 Sobic002G264200--Sobic010G069100 Sobic003G416700 Sobic003G416700 Sobic002G264200--Sobic003G416700 Sobic001G461400 Sobic001G461400 Sobic002G264200--Sobic001G461400 Sobic008G153000 Sobic008G153000 Sobic002G264200--Sobic008G153000 Sobic002G264200--Sobic010G236400 Sobic002G071500 Sobic002G071500 Sobic002G264200--Sobic002G071500 Sobic007G065400 Sobic007G065400 Sobic002G264200--Sobic007G065400 Sobic002G153700 Sobic002G153700 Sobic002G264200--Sobic002G153700 Sobic006G118700 Sobic006G118700 Sobic002G264200--Sobic006G118700 Sobic006G012500 Sobic006G012500 Sobic010G053800--Sobic006G012500 Sobic010G275500 Sobic010G275500 Sobic010G053800--Sobic010G275500 Sobic004G072100 Sobic004G072100 Sobic010G053800--Sobic004G072100 Sobic010G053800--Sobic001G155000 Sobic003G187500 Sobic003G187500 Sobic010G053800--Sobic003G187500 Sobic008G047800 Sobic008G047800 Sobic010G053800--Sobic008G047800 Sobic010G116600 Sobic010G116600 Sobic010G053800--Sobic010G116600 Sobic006G163800 Sobic006G163800 Sobic010G053800--Sobic006G163800 Sobic004G039600 Sobic004G039600 Sobic010G053800--Sobic004G039600 Sobic001G409600--Sobic003G397800 Sobic001G409600--Sobic010G101800 Sobic001G409600--Sobic002G297200 Sobic001G109800 Sobic001G109800 Sobic001G409600--Sobic001G109800 Sobic001G125200 Sobic001G125200 Sobic001G409600--Sobic001G125200 Sobic007G096000 Sobic007G096000 Sobic001G409600--Sobic007G096000 Sobic009G249200 Sobic009G249200 Sobic001G409600--Sobic009G249200 Sobic003G187400 Sobic003G187400 Sobic001G409600--Sobic003G187400 Sobic001G409600--Sobic001G016000 Sobic007G119200--Sobic002G034600 Sobic004G146500 Sobic004G146500 Sobic007G119200--Sobic004G146500 Sobic007G119200--Sobic008G153000 Sobic007G119200--Sobic001G109800 Sobic007G041500 Sobic007G041500 Sobic007G119200--Sobic007G041500 Sobic007G119200--Sobic010G069100 Sobic007G218000 Sobic007G218000 Sobic007G119200--Sobic007G218000 Sobic007G119200--Sobic002G264200 Sobic001G088100 Sobic001G088100 Sobic007G119200--Sobic001G088100 Sobic003G397800--Sobic002G297200 Sobic003G397800--Sobic001G409600 Sobic002G353600 Sobic002G353600 Sobic003G397800--Sobic002G353600 Sobic003G397800--Sobic007G167500 Sobic003G445400 Sobic003G445400 Sobic003G397800--Sobic003G445400 Sobic001G206100 Sobic001G206100 Sobic003G397800--Sobic001G206100 Sobic007G185900 Sobic007G185900 Sobic003G397800--Sobic007G185900 Sobic003G397800--Sobic010G101800 Sobic008G054500 Sobic008G054500 Sobic003G397800--Sobic008G054500 Sobic001G222500 Sobic001G222500 Sobic002G310200--Sobic001G222500 Sobic002G310200--Sobic008G047800 Sobic007G217000 Sobic007G217000 Sobic002G310200--Sobic007G217000 Sobic004G084300 Sobic004G084300 Sobic002G310200--Sobic004G084300 Sobic002G310200--Sobic007G096000 Sobic002G310200--Sobic010G101800 Sobic003G443100 Sobic003G443100 Sobic002G310200--Sobic003G443100 Sobic008G067600 Sobic008G067600 Sobic002G310200--Sobic008G067600 Sobic004G067700 Sobic004G067700 Sobic002G310200--Sobic004G067700
Octagon: transcription factors


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