Gene annotation
Transcriptome id Sobic.004G162400.1
Synonym ERD1, Sb04g021410, SAG15, CLPD
Functional annotation ERD1 protein, chloroplast precursor, putative, expressed
UniProt C5XTC1
Pfam PF02861 PF07728 PF00004 PF10431
Panther DB PTHR11638 PTHR11638:SF107
NCBI CDD -
KEGG Orthology K03696; ATP-dependent Clp protease ATP-binding subunit ClpC
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT5G51070 : Clp ATPase
RAP-DB (Rice) LOC_Os02g32520.1 : ERD1 protein, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a036223 , Zm00025a041064 , Zm00025a020512 , Zm00025a011583
Brachypodium KQJ82432 , KQJ99679 , KQJ99677 , KQJ99678
Barley HORVU5Hr1G081860.4 , HORVU5Hr1G081860.5 , HORVU5Hr1G081860.2 , HORVU5Hr1G081860.3 , HORVU5Hr1G081860.1 , HORVU5Hr1G102440.2 , HORVU5Hr1G102440.3 , HORVU5Hr1G102440.1 , HORVU5Hr1G102440.6 , HORVU5Hr1G102440.7 , HORVU5Hr1G102440.4 , HORVU5Hr1G102440.5 , HORVU5Hr1G102440.8 , HORVU5Hr1G123460.3 , HORVU5Hr1G123460.2 , HORVU5Hr1G102450.1 , HORVU5Hr1G081860.6 , HORVU2Hr1G072020.8 , HORVU2Hr1G072020.3 , HORVU2Hr1G072020.2 , HORVU2Hr1G072020.1 , HORVU2Hr1G072020.7 , HORVU2Hr1G072020.6 , HORVU2Hr1G072020.5 , HORVU2Hr1G072020.4
Wheat TraesCS5A02G321300 , TraesCS5A02G321300 , TraesCS5B02G423000 , TraesCS5D02G328100 , TraesCS5B02G321800 , TraesCS5B02G422900 , TraesCS5B02G422800 , TraesCS3D02G090400 , TraesCS5D02G429700 , TraesCS5D02G429500 , TraesCS5D02G429600 , TraesCS2B02G307500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G216000 BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
2 Sobic.002G304000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nitrilase, putative, expressed K01431: UPB1, beta-ureidopropionase
3 Sobic.005G231900 mitochondrial carrier protein, putative, expressed K15103: UCP2_3, solute carrier family 25 (mitochondrial uncoupling protein), member 8/9
4 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
5 Sobic.009G161000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
6 Sobic.005G178100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@F-box/Kelch-repeat protein, putative, expressed -
7 Sobic.003G355600 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
8 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -
9 Sobic.001G015500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
10 Sobic.003G105800 No apical meristem protein, putative, expressed -
11 Sobic.008G062200 dehydrogenase E1 component domain containing protein, expressed K00166: BCKDHA, 2-oxoisovalerate dehydrogenase E1 component alpha subunit
12 Sobic.005G215900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
13 Sobic.003G005600 ubiquitin conjugating enzyme protein, putative, expressed K10581: ubiquitin-conjugating enzyme E2 O
14 Sobic.002G420700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
15 Sobic.003G244600 similar to PRm 3(PubMedID : 29862293)@glycosyl hydrolase, putative, expressed K01183: chitinase
16 Sobic.003G087200 nuclease PA3, putative, expressed -
17 Sobic.002G085300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
18 Sobic.003G252300 universal stress protein domain containing protein, putative, expressed -
19 Sobic.009G054500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@lipase, putative, expressed -
20 Sobic.001G488500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"OsFBK12(Ortholog in rice:Chen et al., 2013)"(PubMedID : 31659851)@OsFBK12 - F-box domain and kelch repeat containing protein, expressed -


Gene co-expression network
sample Sobic004G162400 Sobic004G162400 Sobic005G216000 Sobic005G216000 Sobic004G162400--Sobic005G216000 Sobic002G304000 Sobic002G304000 Sobic004G162400--Sobic002G304000 Sobic005G231900 Sobic005G231900 Sobic004G162400--Sobic005G231900 Sobic004G101900 Sobic004G101900 Sobic004G162400--Sobic004G101900 Sobic009G161000 Sobic009G161000 Sobic004G162400--Sobic009G161000 Sobic005G178100 Sobic005G178100 Sobic004G162400--Sobic005G178100 Sobic003G355600 Sobic003G355600 Sobic004G162400--Sobic003G355600 Sobic009G126900 Sobic009G126900 Sobic004G162400--Sobic009G126900 Sobic001G015500 Sobic001G015500 Sobic004G162400--Sobic001G015500 Sobic005G216000--Sobic004G162400 Sobic007G035000 Sobic007G035000 Sobic005G216000--Sobic007G035000 Sobic002G420700 Sobic002G420700 Sobic005G216000--Sobic002G420700 Sobic005G215900 Sobic005G215900 Sobic005G216000--Sobic005G215900 Sobic005G216000--Sobic002G304000 Sobic005G216000--Sobic005G231900 Sobic003G244600 Sobic003G244600 Sobic005G216000--Sobic003G244600 Sobic003G105800 Sobic003G105800 Sobic005G216000--Sobic003G105800 Sobic005G216000--Sobic005G178100 Sobic009G226300 Sobic009G226300 Sobic002G304000--Sobic009G226300 Sobic009G054500 Sobic009G054500 Sobic002G304000--Sobic009G054500 Sobic002G304000--Sobic004G101900 Sobic003G148800 Sobic003G148800 Sobic002G304000--Sobic003G148800 Sobic002G215700 Sobic002G215700 Sobic002G304000--Sobic002G215700 Sobic008G062200 Sobic008G062200 Sobic002G304000--Sobic008G062200 Sobic001G325200 Sobic001G325200 Sobic002G304000--Sobic001G325200 Sobic002G304000--Sobic003G355600 Sobic002G304000--Sobic003G105800 Sobic005G231900--Sobic004G162400 Sobic001G488500 Sobic001G488500 Sobic005G231900--Sobic001G488500 Sobic005G079900 Sobic005G079900 Sobic005G231900--Sobic005G079900 Sobic005G231900--Sobic004G101900 Sobic005G231900--Sobic005G216000 Sobic004G236600 Sobic004G236600 Sobic005G231900--Sobic004G236600 Sobic005G231900--Sobic002G304000 Sobic002G322900 Sobic002G322900 Sobic005G231900--Sobic002G322900 Sobic006G271200 Sobic006G271200 Sobic005G231900--Sobic006G271200 Sobic004G101900--Sobic002G304000 Sobic004G101900--Sobic002G215700 Sobic004G101900--Sobic001G325200 Sobic004G101900--Sobic009G226300 Sobic004G101900--Sobic009G054500 Sobic004G101900--Sobic008G062200 Sobic004G101900--Sobic003G148800 Sobic004G124200 Sobic004G124200 Sobic004G101900--Sobic004G124200 Sobic004G101900--Sobic001G015500 Sobic009G161000--Sobic005G178100 Sobic009G161000--Sobic004G101900 Sobic009G161000--Sobic001G325200 Sobic006G100332 Sobic006G100332 Sobic009G161000--Sobic006G100332 Sobic009G161000--Sobic003G105800 Sobic004G260000 Sobic004G260000 Sobic009G161000--Sobic004G260000 Sobic009G161000--Sobic009G226300 Sobic001G305800 Sobic001G305800 Sobic009G161000--Sobic001G305800 Sobic009G161000--Sobic004G124200 Sobic005G178100--Sobic009G161000 Sobic005G178100--Sobic001G305800 Sobic003G087200 Sobic003G087200 Sobic005G178100--Sobic003G087200 Sobic005G178100--Sobic002G420700 Sobic005G178100--Sobic001G015500 Sobic005G178100--Sobic003G105800 Sobic009G034700 Sobic009G034700 Sobic005G178100--Sobic009G034700 Sobic003G184900 Sobic003G184900 Sobic005G178100--Sobic003G184900 Sobic001G150600 Sobic001G150600 Sobic005G178100--Sobic001G150600 Sobic003G355600--Sobic008G062200 Sobic003G355600--Sobic001G325200 Sobic003G355600--Sobic002G304000 Sobic003G355600--Sobic009G226300 Sobic010G107000 Sobic010G107000 Sobic003G355600--Sobic010G107000 Sobic006G199000 Sobic006G199000 Sobic003G355600--Sobic006G199000 Sobic002G009700 Sobic002G009700 Sobic003G355600--Sobic002G009700 Sobic009G193700 Sobic009G193700 Sobic003G355600--Sobic009G193700 Sobic003G355600--Sobic004G101900 Sobic010G043400 Sobic010G043400 Sobic009G126900--Sobic010G043400 Sobic002G270500 Sobic002G270500 Sobic009G126900--Sobic002G270500 Sobic009G126900--Sobic002G009700 Sobic009G126900--Sobic006G271200 Sobic001G003000 Sobic001G003000 Sobic009G126900--Sobic001G003000 Sobic009G126900--Sobic004G124200 Sobic003G005600 Sobic003G005600 Sobic009G126900--Sobic003G005600 Sobic003G329400 Sobic003G329400 Sobic009G126900--Sobic003G329400 Sobic009G126900--Sobic004G101900 Sobic001G069900 Sobic001G069900 Sobic001G015500--Sobic001G069900 Sobic001G015500--Sobic001G325200 Sobic006G091700 Sobic006G091700 Sobic001G015500--Sobic006G091700 Sobic001G015500--Sobic003G087200 Sobic001G015500--Sobic004G101900 Sobic001G015500--Sobic005G178100 Sobic001G015500--Sobic004G124200 Sobic001G015500--Sobic001G150600 Sobic007G186200 Sobic007G186200 Sobic001G015500--Sobic007G186200
Octagon: transcription factors


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