Gene annotation
Transcriptome id Sobic.003G244600.1
Synonym ATCHIA, CHIA, Sb03g030100
Functional annotation similar to PRm 3 (PubMedID : 29862293)
glycosyl hydrolase, putative, expressed
UniProt A0A1B6Q537
Pfam PF00704
Panther DB PTHR11177 PTHR11177:SF165
NCBI CDD -
KEGG Orthology K01183; chitinase
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT5G24090 : chitinase A
RAP-DB (Rice) LOC_Os01g47070.1 : glycosyl hydrolase, putative, expressed
MaizeGDB (Corn) Zm00025a028171 , Zm00025a026759 , Zm00025a030311
Brachypodium KQK09284
Barley HORVU3Hr1G054970.1 , HORVU3Hr1G059480.2 , HORVU3Hr1G059480.1 , HORVU3Hr1G084220.1 , HORVU3Hr1G084250.1 , HORVU3Hr1G084220.2 , HORVU3Hr1G083670.2
Wheat TraesCS3B02G408600
Populus -


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cDNA sequences
Sobic.003G244600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G189200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
2 Sobic.006G030700 receptor kinase, putative, expressed -
3 Sobic.002G304000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nitrilase, putative, expressed K01431: UPB1, beta-ureidopropionase
4 Sobic.006G091700 12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
5 Sobic.003G105800 No apical meristem protein, putative, expressed -
6 Sobic.005G216000 BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
7 Sobic.007G186200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@solute carrier family 35 member F1, putative, expressed K15287: solute carrier family 35, member F1/2
8 Sobic.001G015500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
9 Sobic.009G226300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
10 Sobic.005G169400 WIP5 - Wound-induced protein precursor, expressed -
11 Sobic.001G150200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsWAK53b - OsWAK receptor-like protein kinase, expressed -
12 Sobic.003G087200 nuclease PA3, putative, expressed -
13 Sobic.009G114000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Os5bglu22 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed K01188: beta-glucosidase
14 Sobic.003G355600 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
15 Sobic.005G215900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
16 Sobic.001G249300 Cf2/Cf5 disease resistance protein, putative, expressed -
17 Sobic.005G178100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@F-box/Kelch-repeat protein, putative, expressed -
18 Sobic.001G150600 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K13606: NOL, chlorophyll(ide) b reductase
19 Sobic.006G132500 CHIT3 - Chitinase family protein precursor, expressed K01183: chitinase
20 Sobic.001G069900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed K00088: IMPDH, IMP dehydrogenase


Gene co-expression network
sample Sobic003G244600 Sobic003G244600 Sobic008G189200 Sobic008G189200 Sobic003G244600--Sobic008G189200 Sobic006G030700 Sobic006G030700 Sobic003G244600--Sobic006G030700 Sobic002G304000 Sobic002G304000 Sobic003G244600--Sobic002G304000 Sobic006G091700 Sobic006G091700 Sobic003G244600--Sobic006G091700 Sobic003G105800 Sobic003G105800 Sobic003G244600--Sobic003G105800 Sobic005G216000 Sobic005G216000 Sobic003G244600--Sobic005G216000 Sobic007G186200 Sobic007G186200 Sobic003G244600--Sobic007G186200 Sobic001G015500 Sobic001G015500 Sobic003G244600--Sobic001G015500 Sobic009G226300 Sobic009G226300 Sobic003G244600--Sobic009G226300 Sobic008G189200--Sobic003G244600 Sobic008G190900 Sobic008G190900 Sobic008G189200--Sobic008G190900 Sobic005G217200 Sobic005G217200 Sobic008G189200--Sobic005G217200 Sobic010G043400 Sobic010G043400 Sobic008G189200--Sobic010G043400 Sobic009G126900 Sobic009G126900 Sobic008G189200--Sobic009G126900 Sobic002G274800 Sobic002G274800 Sobic008G189200--Sobic002G274800 Sobic007G092700 Sobic007G092700 Sobic008G189200--Sobic007G092700 Sobic008G189200--Sobic003G105800 Sobic001G150200 Sobic001G150200 Sobic008G189200--Sobic001G150200 Sobic007G187300 Sobic007G187300 Sobic006G030700--Sobic007G187300 Sobic006G030700--Sobic009G226300 Sobic001G249300 Sobic001G249300 Sobic006G030700--Sobic001G249300 Sobic001G150600 Sobic001G150600 Sobic006G030700--Sobic001G150600 Sobic001G280200 Sobic001G280200 Sobic006G030700--Sobic001G280200 Sobic009G054500 Sobic009G054500 Sobic006G030700--Sobic009G054500 Sobic006G100332 Sobic006G100332 Sobic006G030700--Sobic006G100332 Sobic009G029600 Sobic009G029600 Sobic006G030700--Sobic009G029600 Sobic003G087200 Sobic003G087200 Sobic006G030700--Sobic003G087200 Sobic002G304000--Sobic009G226300 Sobic002G304000--Sobic009G054500 Sobic004G101900 Sobic004G101900 Sobic002G304000--Sobic004G101900 Sobic003G148800 Sobic003G148800 Sobic002G304000--Sobic003G148800 Sobic002G215700 Sobic002G215700 Sobic002G304000--Sobic002G215700 Sobic008G062200 Sobic008G062200 Sobic002G304000--Sobic008G062200 Sobic001G325200 Sobic001G325200 Sobic002G304000--Sobic001G325200 Sobic003G355600 Sobic003G355600 Sobic002G304000--Sobic003G355600 Sobic002G304000--Sobic003G105800 Sobic009G114000 Sobic009G114000 Sobic006G091700--Sobic009G114000 Sobic006G091700--Sobic003G087200 Sobic006G091700--Sobic001G150600 Sobic002G085300 Sobic002G085300 Sobic006G091700--Sobic002G085300 Sobic006G091700--Sobic001G015500 Sobic008G153400 Sobic008G153400 Sobic006G091700--Sobic008G153400 Sobic006G091700--Sobic006G030700 Sobic006G199000 Sobic006G199000 Sobic006G091700--Sobic006G199000 Sobic001G069900 Sobic001G069900 Sobic006G091700--Sobic001G069900 Sobic003G184900 Sobic003G184900 Sobic003G105800--Sobic003G184900 Sobic008G079300 Sobic008G079300 Sobic003G105800--Sobic008G079300 Sobic004G321800 Sobic004G321800 Sobic003G105800--Sobic004G321800 Sobic003G105800--Sobic001G325200 Sobic003G105800--Sobic002G304000 Sobic007G225900 Sobic007G225900 Sobic003G105800--Sobic007G225900 Sobic003G105800--Sobic006G100332 Sobic003G105800--Sobic003G087200 Sobic003G105800--Sobic009G226300 Sobic004G162400 Sobic004G162400 Sobic005G216000--Sobic004G162400 Sobic007G035000 Sobic007G035000 Sobic005G216000--Sobic007G035000 Sobic002G420700 Sobic002G420700 Sobic005G216000--Sobic002G420700 Sobic005G215900 Sobic005G215900 Sobic005G216000--Sobic005G215900 Sobic005G216000--Sobic002G304000 Sobic005G231900 Sobic005G231900 Sobic005G216000--Sobic005G231900 Sobic005G216000--Sobic003G244600 Sobic005G216000--Sobic003G105800 Sobic005G178100 Sobic005G178100 Sobic005G216000--Sobic005G178100 Sobic007G186200--Sobic001G325200 Sobic007G186200--Sobic002G304000 Sobic007G186200--Sobic009G226300 Sobic007G186200--Sobic001G015500 Sobic007G068100 Sobic007G068100 Sobic007G186200--Sobic007G068100 Sobic007G186200--Sobic003G355600 Sobic007G186200--Sobic001G150600 Sobic007G186200--Sobic004G101900 Sobic007G186200--Sobic009G054500 Sobic001G015500--Sobic001G069900 Sobic001G015500--Sobic001G325200 Sobic001G015500--Sobic006G091700 Sobic001G015500--Sobic003G087200 Sobic001G015500--Sobic004G101900 Sobic001G015500--Sobic005G178100 Sobic004G124200 Sobic004G124200 Sobic001G015500--Sobic004G124200 Sobic001G015500--Sobic001G150600 Sobic001G015500--Sobic007G186200 Sobic009G226300--Sobic009G054500 Sobic009G226300--Sobic001G249300 Sobic009G226300--Sobic007G187300 Sobic009G226300--Sobic006G030700 Sobic009G226300--Sobic003G148800 Sobic009G226300--Sobic006G100332 Sobic009G226300--Sobic001G325200 Sobic009G226300--Sobic002G304000 Sobic004G260000 Sobic004G260000 Sobic009G226300--Sobic004G260000
Octagon: transcription factors


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