Gene annotation
Transcriptome id Sobic.006G132500.1
Synonym ATCHITIV, EP3, ATEP3, CHIV, Sb06g021250
Functional annotation CHIT3 - Chitinase family protein precursor, expressed
UniProt C5YBF0
Pfam PF00187 PF00182
Panther DB PTHR22595 PTHR22595:SF60
NCBI CDD KOG4742; Predicted chitinase
KEGG Orthology K01183; chitinase
Gene Ontology GO:0008061; chitin binding GO:0016998cell wall macromolecule catabolic process GO:0006032chitin catabolic process GO:0004568chitinase activity


Orthologs (automatic annotation)
TAIR AT3G54420 : homolog of carrot EP3-3 chitinase
RAP-DB (Rice) LOC_Os04g41680.1 : CHIT3 - Chitinase family protein precursor, expressed
MaizeGDB (Corn) Zm00025a010855 , Zm00025a010854 , Zm00025a010853 , Zm00025a056371
Brachypodium KQK00253 , KQK04002
Barley HORVU0Hr1G016310.1 , HORVU0Hr1G016310.3 , HORVU0Hr1G016310.2 , HORVU0Hr1G016310.4 , HORVU2Hr1G085270.9 , HORVU2Hr1G085270.6 , HORVU2Hr1G085270.10 , HORVU2Hr1G085270.11
Wheat TraesCS2D02G348800 , TraesCS6A02G216100 , TraesCS6B02G246800 , TraesCS2A02G350800 , TraesCS6D02G199500 , TraesCS2A02G350700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G210200 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
2 Sobic.008G182300 thaumatin, putative, expressed -
3 Sobic.003G244600 similar to PRm 3(PubMedID : 29862293)@glycosyl hydrolase, putative, expressed K01183: chitinase
4 Sobic.005G169400 WIP5 - Wound-induced protein precursor, expressed -
5 Sobic.001G145600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@thaumatin family domain containing protein, expressed -
6 Sobic.003G111300 PIII1 - Proteinase inhibitor II family protein precursor, expressed -
7 Sobic.005G215900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
8 Sobic.002G023300 SCP-like extracellular protein, expressed K13449: pathogenesis-related protein 1
9 Sobic.001G145700 thaumatin, putative, expressed -
10 Sobic.004G333200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
11 Sobic.003G061800 glutaryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
12 Sobic.003G148800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K09699: DBT, 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase)
13 Sobic.005G037100 receptor-like protein kinase, putative, expressed -
14 Sobic.001G132000 fumarylacetoacetase, putative, expressed K01557: acylpyruvate hydrolase
15 Sobic.003G061400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@basic helix-loop-helix, putative, expressed -
16 Sobic.004G321800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@saccharopine dehydrogenase, putative, expressed K14157: alpha-aminoadipic semialdehyde synthase
17 Sobic.003G329400 dihydropyrimidinase, putative, expressed K01464: DPYS, dht, dihydropyrimidinase
18 Sobic.003G184900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@esterase, putative, expressed -
19 Sobic.006G030700 receptor kinase, putative, expressed -
20 Sobic.009G226300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic006G132500 Sobic006G132500 Sobic010G210200 Sobic010G210200 Sobic006G132500--Sobic010G210200 Sobic008G182300 Sobic008G182300 Sobic006G132500--Sobic008G182300 Sobic003G244600 Sobic003G244600 Sobic006G132500--Sobic003G244600 Sobic005G169400 Sobic005G169400 Sobic006G132500--Sobic005G169400 Sobic001G145600 Sobic001G145600 Sobic006G132500--Sobic001G145600 Sobic003G111300 Sobic003G111300 Sobic006G132500--Sobic003G111300 Sobic005G215900 Sobic005G215900 Sobic006G132500--Sobic005G215900 Sobic002G023300 Sobic002G023300 Sobic006G132500--Sobic002G023300 Sobic001G145700 Sobic001G145700 Sobic006G132500--Sobic001G145700 Sobic010G210200--Sobic006G132500 Sobic001G132000 Sobic001G132000 Sobic010G210200--Sobic001G132000 Sobic010G210200--Sobic005G215900 Sobic009G167700 Sobic009G167700 Sobic010G210200--Sobic009G167700 Sobic003G061800 Sobic003G061800 Sobic010G210200--Sobic003G061800 Sobic003G442500 Sobic003G442500 Sobic010G210200--Sobic003G442500 Sobic005G217200 Sobic005G217200 Sobic010G210200--Sobic005G217200 Sobic009G210600 Sobic009G210600 Sobic010G210200--Sobic009G210600 Sobic003G061400 Sobic003G061400 Sobic010G210200--Sobic003G061400 Sobic008G182600 Sobic008G182600 Sobic008G182300--Sobic008G182600 Sobic005G169200 Sobic005G169200 Sobic008G182300--Sobic005G169200 Sobic008G182300--Sobic006G132500 Sobic008G182300--Sobic001G145700 Sobic008G182800 Sobic008G182800 Sobic008G182300--Sobic008G182800 Sobic008G182300--Sobic005G169400 Sobic008G182300--Sobic001G145600 Sobic008G182300--Sobic002G023300 Sobic008G182300--Sobic003G244600 Sobic008G189200 Sobic008G189200 Sobic003G244600--Sobic008G189200 Sobic006G030700 Sobic006G030700 Sobic003G244600--Sobic006G030700 Sobic002G304000 Sobic002G304000 Sobic003G244600--Sobic002G304000 Sobic006G091700 Sobic006G091700 Sobic003G244600--Sobic006G091700 Sobic003G105800 Sobic003G105800 Sobic003G244600--Sobic003G105800 Sobic005G216000 Sobic005G216000 Sobic003G244600--Sobic005G216000 Sobic007G186200 Sobic007G186200 Sobic003G244600--Sobic007G186200 Sobic001G015500 Sobic001G015500 Sobic003G244600--Sobic001G015500 Sobic009G226300 Sobic009G226300 Sobic003G244600--Sobic009G226300 Sobic003G111200 Sobic003G111200 Sobic005G169400--Sobic003G111200 Sobic009G114000 Sobic009G114000 Sobic005G169400--Sobic009G114000 Sobic004G321800 Sobic004G321800 Sobic005G169400--Sobic004G321800 Sobic006G226400 Sobic006G226400 Sobic005G169400--Sobic006G226400 Sobic003G087200 Sobic003G087200 Sobic005G169400--Sobic003G087200 Sobic004G320600 Sobic004G320600 Sobic005G169400--Sobic004G320600 Sobic008G079300 Sobic008G079300 Sobic005G169400--Sobic008G079300 Sobic005G169400--Sobic003G244600 Sobic001G069900 Sobic001G069900 Sobic005G169400--Sobic001G069900 Sobic002G011600 Sobic002G011600 Sobic001G145600--Sobic002G011600 Sobic001G145600--Sobic001G145700 Sobic001G145600--Sobic006G132500 Sobic001G145600--Sobic003G244600 Sobic001G145600--Sobic006G030700 Sobic001G145600--Sobic008G182300 Sobic005G018500 Sobic005G018500 Sobic001G145600--Sobic005G018500 Sobic001G145600--Sobic009G226300 Sobic009G181200 Sobic009G181200 Sobic001G145600--Sobic009G181200 Sobic003G111300--Sobic006G132500 Sobic003G111300--Sobic003G111200 Sobic004G008800 Sobic004G008800 Sobic003G111300--Sobic004G008800 Sobic006G155000 Sobic006G155000 Sobic003G111300--Sobic006G155000 Sobic003G111300--Sobic010G210200 Sobic002G122800 Sobic002G122800 Sobic003G111300--Sobic002G122800 Sobic003G111300--Sobic003G442500 Sobic003G111300--Sobic003G061400 Sobic003G111300--Sobic005G169400 Sobic005G152100 Sobic005G152100 Sobic005G215900--Sobic005G152100 Sobic004G236600 Sobic004G236600 Sobic005G215900--Sobic004G236600 Sobic002G381300 Sobic002G381300 Sobic005G215900--Sobic002G381300 Sobic005G215900--Sobic005G216000 Sobic001G488500 Sobic001G488500 Sobic005G215900--Sobic001G488500 Sobic008G024400 Sobic008G024400 Sobic005G215900--Sobic008G024400 Sobic005G215900--Sobic002G304000 Sobic003G149200 Sobic003G149200 Sobic005G215900--Sobic003G149200 Sobic001G249300 Sobic001G249300 Sobic005G215900--Sobic001G249300 Sobic002G023300--Sobic003G244600 Sobic002G023300--Sobic005G169400 Sobic002G023300--Sobic006G132500 Sobic002G023300--Sobic003G111200 Sobic002G023300--Sobic008G079300 Sobic003G184900 Sobic003G184900 Sobic002G023300--Sobic003G184900 Sobic002G023300--Sobic004G320600 Sobic003G388251 Sobic003G388251 Sobic002G023300--Sobic003G388251 Sobic008G182700 Sobic008G182700 Sobic002G023300--Sobic008G182700 Sobic001G145700--Sobic005G169200 Sobic001G145700--Sobic008G182300 Sobic001G145700--Sobic008G182600 Sobic001G145700--Sobic009G181200 Sobic001G145700--Sobic008G182800 Sobic001G145700--Sobic001G145600 Sobic010G230800 Sobic010G230800 Sobic001G145700--Sobic010G230800 Sobic009G073500 Sobic009G073500 Sobic001G145700--Sobic009G073500 Sobic006G076800 Sobic006G076800 Sobic001G145700--Sobic006G076800
Octagon: transcription factors


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