Gene annotation
Transcriptome id Sobic.003G061400.2,Sobic.003G061400.1
Synonym Sb03g005250
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
basic helix-loop-helix, putative, expressed
UniProt C5XP74
Pfam PF00010
Panther DB PTHR12565 PTHR12565:SF130
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G40200 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os01g06640.1,LOC_Os01g06640.2 : basic helix-loop-helix, putative, expressed
MaizeGDB (Corn) Zm00025a023352
Brachypodium KQK02809 , KQK02808 , KQK02807
Barley HORVU3Hr1G018680.2 , HORVU3Hr1G018680.3 , HORVU3Hr1G018680.1 , HORVU3Hr1G018680.6 , HORVU3Hr1G018680.7 , HORVU3Hr1G018680.4 , HORVU3Hr1G018680.5
Wheat TraesCS3D02G104800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G061400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G333200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
2 Sobic.010G176700 receptor-like protein kinase precursor, putative, expressed -
3 Sobic.003G442500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CESA2 - cellulose synthase, expressed -
4 Sobic.001G132000 fumarylacetoacetase, putative, expressed K01557: acylpyruvate hydrolase
5 Sobic.005G215900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
6 Sobic.010G210200 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
7 Sobic.005G024900 major facilitator superfamily antiporter, putative, expressed -
8 Sobic.009G016800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
9 Sobic.006G127100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@malate synthase, glyoxysomal, putative, expressed K01638: aceB, malate synthase
10 Sobic.001G305800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@U-box domain containing protein, expressed -
11 Sobic.005G178100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@F-box/Kelch-repeat protein, putative, expressed -
12 Sobic.003G241000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CTP synthase, putative, expressed K01937: pyrG, CTP synthase
13 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
14 Sobic.009G167700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
15 Sobic.004G321800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@saccharopine dehydrogenase, putative, expressed K14157: alpha-aminoadipic semialdehyde synthase
16 Sobic.007G219900 uncharacterized glycosyltransferase, putative, expressed K06617: raffinose synthase
17 Sobic.002G087800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1-aminocyclopropane-1-carboxylate oxidase 2, putative, expressed -
18 Sobic.006G132500 CHIT3 - Chitinase family protein precursor, expressed K01183: chitinase
19 Sobic.003G087200 nuclease PA3, putative, expressed -
20 Sobic.003G061800 glutaryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase


Gene co-expression network
sample Sobic003G061400 Sobic003G061400 Sobic004G333200 Sobic004G333200 Sobic003G061400--Sobic004G333200 Sobic010G176700 Sobic010G176700 Sobic003G061400--Sobic010G176700 Sobic003G442500 Sobic003G442500 Sobic003G061400--Sobic003G442500 Sobic001G132000 Sobic001G132000 Sobic003G061400--Sobic001G132000 Sobic005G215900 Sobic005G215900 Sobic003G061400--Sobic005G215900 Sobic010G210200 Sobic010G210200 Sobic003G061400--Sobic010G210200 Sobic005G024900 Sobic005G024900 Sobic003G061400--Sobic005G024900 Sobic009G016800 Sobic009G016800 Sobic003G061400--Sobic009G016800 Sobic006G127100 Sobic006G127100 Sobic003G061400--Sobic006G127100 Sobic004G333200--Sobic003G061400 Sobic005G178100 Sobic005G178100 Sobic004G333200--Sobic005G178100 Sobic001G305800 Sobic001G305800 Sobic004G333200--Sobic001G305800 Sobic007G219900 Sobic007G219900 Sobic004G333200--Sobic007G219900 Sobic004G333200--Sobic006G127100 Sobic004G345800 Sobic004G345800 Sobic004G333200--Sobic004G345800 Sobic004G321800 Sobic004G321800 Sobic004G333200--Sobic004G321800 Sobic004G101900 Sobic004G101900 Sobic004G333200--Sobic004G101900 Sobic003G184900 Sobic003G184900 Sobic004G333200--Sobic003G184900 Sobic010G176700--Sobic003G061400 Sobic002G249000 Sobic002G249000 Sobic010G176700--Sobic002G249000 Sobic009G003900 Sobic009G003900 Sobic010G176700--Sobic009G003900 Sobic001G184000 Sobic001G184000 Sobic010G176700--Sobic001G184000 Sobic002G057300 Sobic002G057300 Sobic010G176700--Sobic002G057300 Sobic010G176700--Sobic003G442500 Sobic004G185900 Sobic004G185900 Sobic010G176700--Sobic004G185900 Sobic001G010400 Sobic001G010400 Sobic010G176700--Sobic001G010400 Sobic004G277000 Sobic004G277000 Sobic010G176700--Sobic004G277000 Sobic003G442500--Sobic003G061400 Sobic003G442500--Sobic010G210200 Sobic003G442500--Sobic010G176700 Sobic003G442500--Sobic004G333200 Sobic002G113100 Sobic002G113100 Sobic003G442500--Sobic002G113100 Sobic003G061800 Sobic003G061800 Sobic003G442500--Sobic003G061800 Sobic001G409200 Sobic001G409200 Sobic003G442500--Sobic001G409200 Sobic003G111300 Sobic003G111300 Sobic003G442500--Sobic003G111300 Sobic003G442500--Sobic001G010400 Sobic006G119200 Sobic006G119200 Sobic001G132000--Sobic006G119200 Sobic009G167700 Sobic009G167700 Sobic001G132000--Sobic009G167700 Sobic001G132000--Sobic010G210200 Sobic001G132000--Sobic005G024900 Sobic001G132000--Sobic004G101900 Sobic001G132000--Sobic003G061400 Sobic001G132000--Sobic007G219900 Sobic005G079900 Sobic005G079900 Sobic001G132000--Sobic005G079900 Sobic002G304000 Sobic002G304000 Sobic001G132000--Sobic002G304000 Sobic005G152100 Sobic005G152100 Sobic005G215900--Sobic005G152100 Sobic004G236600 Sobic004G236600 Sobic005G215900--Sobic004G236600 Sobic002G381300 Sobic002G381300 Sobic005G215900--Sobic002G381300 Sobic005G216000 Sobic005G216000 Sobic005G215900--Sobic005G216000 Sobic001G488500 Sobic001G488500 Sobic005G215900--Sobic001G488500 Sobic008G024400 Sobic008G024400 Sobic005G215900--Sobic008G024400 Sobic005G215900--Sobic002G304000 Sobic003G149200 Sobic003G149200 Sobic005G215900--Sobic003G149200 Sobic001G249300 Sobic001G249300 Sobic005G215900--Sobic001G249300 Sobic006G132500 Sobic006G132500 Sobic010G210200--Sobic006G132500 Sobic010G210200--Sobic001G132000 Sobic010G210200--Sobic005G215900 Sobic010G210200--Sobic009G167700 Sobic010G210200--Sobic003G061800 Sobic010G210200--Sobic003G442500 Sobic005G217200 Sobic005G217200 Sobic010G210200--Sobic005G217200 Sobic009G210600 Sobic009G210600 Sobic010G210200--Sobic009G210600 Sobic010G210200--Sobic003G061400 Sobic002G087800 Sobic002G087800 Sobic005G024900--Sobic002G087800 Sobic005G024900--Sobic001G132000 Sobic005G024900--Sobic003G061400 Sobic003G440900 Sobic003G440900 Sobic005G024900--Sobic003G440900 Sobic003G241500 Sobic003G241500 Sobic005G024900--Sobic003G241500 Sobic005G024900--Sobic004G333200 Sobic006G244400 Sobic006G244400 Sobic005G024900--Sobic006G244400 Sobic005G152200 Sobic005G152200 Sobic005G024900--Sobic005G152200 Sobic005G024900--Sobic006G127100 Sobic009G236200 Sobic009G236200 Sobic009G016800--Sobic009G236200 Sobic009G016800--Sobic005G215900 Sobic009G016800--Sobic002G381300 Sobic010G016400 Sobic010G016400 Sobic009G016800--Sobic010G016400 Sobic009G016800--Sobic002G249000 Sobic003G085300 Sobic003G085300 Sobic009G016800--Sobic003G085300 Sobic006G140000 Sobic006G140000 Sobic009G016800--Sobic006G140000 Sobic009G016800--Sobic003G061400 Sobic001G151800 Sobic001G151800 Sobic009G016800--Sobic001G151800 Sobic006G127100--Sobic007G219900 Sobic002G113300 Sobic002G113300 Sobic006G127100--Sobic002G113300 Sobic006G127100--Sobic004G345800 Sobic006G127100--Sobic004G333200 Sobic006G127100--Sobic004G321800 Sobic003G148800 Sobic003G148800 Sobic006G127100--Sobic003G148800 Sobic003G366400 Sobic003G366400 Sobic006G127100--Sobic003G366400 Sobic002G324000 Sobic002G324000 Sobic006G127100--Sobic002G324000 Sobic006G127100--Sobic003G184900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.