Gene annotation
Transcriptome id Sobic.001G132000.1
Synonym Sb01g011570
Functional annotation fumarylacetoacetase, putative, expressed
UniProt C5WPI5
Pfam PF01557
Panther DB PTHR11820
NCBI CDD KOG1535; Predicted fumarylacetoacetate hydralase
KEGG Orthology K01557; acylpyruvate hydrolase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT4G15940 : Fumarylacetoacetate (FAA) hydrolase family
RAP-DB (Rice) LOC_Os03g61330.1 : fumarylacetoacetase, putative, expressed
MaizeGDB (Corn) Zm00025a007656 , Zm00025a008913 , Zm00025a009194
Brachypodium PNT74448 , KQK14218 , KQK12346
Barley HORVU4Hr1G013370.1 , HORVU4Hr1G013370.2 , HORVU4Hr1G013370.3 , HORVU4Hr1G013370.4 , HORVU4Hr1G013370.5 , HORVU4Hr1G013370.6 , HORVU4Hr1G013370.7 , HORVU4Hr1G013370.8 , HORVU5Hr1G115710.1
Wheat TraesCS4A02G366200 , TraesCS4A02G236400 , TraesCS4B02G078600 , TraesCS4D02G077400 , TraesCS5D02G506900 , TraesCS5B02G507100
Populus -


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cDNA sequences
Sobic.001G132000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G119200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@copper methylamine oxidase precursor, putative, expressed K00276: AOC3, AOC2, primary-amine oxidase
2 Sobic.009G167700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
3 Sobic.010G210200 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
4 Sobic.005G024900 major facilitator superfamily antiporter, putative, expressed -
5 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
6 Sobic.003G061400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@basic helix-loop-helix, putative, expressed -
7 Sobic.007G219900 uncharacterized glycosyltransferase, putative, expressed K06617: raffinose synthase
8 Sobic.005G079900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@F-box domain containing protein, expressed -
9 Sobic.002G304000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nitrilase, putative, expressed K01431: UPB1, beta-ureidopropionase
10 Sobic.005G215900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
11 Sobic.006G127100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@malate synthase, glyoxysomal, putative, expressed K01638: aceB, malate synthase
12 Sobic.004G333200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
13 Sobic.002G215700 similar to Aldehyde dehydrogenase(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Aldehyde dehydrogenase B4(PubMedID : 26320239)@Zinc finger(C3H4-type Ring finger) family protein(PubMedID : 26320239)@a glutamate S-semialdehyde dehydrogenase(PubMedID : 26320239)@aldehyde dehydrogenase, putative, expressed K14085: aldehyde dehydrogenase family 7 member A1
14 Sobic.003G149200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed -
15 Sobic.003G329400 dihydropyrimidinase, putative, expressed K01464: DPYS, dht, dihydropyrimidinase
16 Sobic.001G322700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@5-oxoprolinase, putative, expressed K01469: OPLAH, OXP1, 5-oxoprolinase (ATP-hydrolysing)
17 Sobic.005G139400 SNARE associated Golgi protein, putative, expressed -
18 Sobic.003G354400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
19 Sobic.003G061800 glutaryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
20 Sobic.001G512800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase


Gene co-expression network
sample Sobic001G132000 Sobic001G132000 Sobic006G119200 Sobic006G119200 Sobic001G132000--Sobic006G119200 Sobic009G167700 Sobic009G167700 Sobic001G132000--Sobic009G167700 Sobic010G210200 Sobic010G210200 Sobic001G132000--Sobic010G210200 Sobic005G024900 Sobic005G024900 Sobic001G132000--Sobic005G024900 Sobic004G101900 Sobic004G101900 Sobic001G132000--Sobic004G101900 Sobic003G061400 Sobic003G061400 Sobic001G132000--Sobic003G061400 Sobic007G219900 Sobic007G219900 Sobic001G132000--Sobic007G219900 Sobic005G079900 Sobic005G079900 Sobic001G132000--Sobic005G079900 Sobic002G304000 Sobic002G304000 Sobic001G132000--Sobic002G304000 Sobic001G386400 Sobic001G386400 Sobic006G119200--Sobic001G386400 Sobic006G119200--Sobic001G132000 Sobic010G016400 Sobic010G016400 Sobic006G119200--Sobic010G016400 Sobic006G119200--Sobic009G167700 Sobic002G155400 Sobic002G155400 Sobic006G119200--Sobic002G155400 Sobic009G234800 Sobic009G234800 Sobic006G119200--Sobic009G234800 Sobic001G512800 Sobic001G512800 Sobic006G119200--Sobic001G512800 Sobic005G231900 Sobic005G231900 Sobic006G119200--Sobic005G231900 Sobic004G347300 Sobic004G347300 Sobic006G119200--Sobic004G347300 Sobic002G244100 Sobic002G244100 Sobic009G167700--Sobic002G244100 Sobic004G341200 Sobic004G341200 Sobic009G167700--Sobic004G341200 Sobic004G102400 Sobic004G102400 Sobic009G167700--Sobic004G102400 Sobic009G167700--Sobic001G386400 Sobic009G167700--Sobic010G016400 Sobic001G089800 Sobic001G089800 Sobic009G167700--Sobic001G089800 Sobic003G354400 Sobic003G354400 Sobic009G167700--Sobic003G354400 Sobic009G167700--Sobic001G132000 Sobic009G167700--Sobic006G119200 Sobic006G132500 Sobic006G132500 Sobic010G210200--Sobic006G132500 Sobic010G210200--Sobic001G132000 Sobic005G215900 Sobic005G215900 Sobic010G210200--Sobic005G215900 Sobic010G210200--Sobic009G167700 Sobic003G061800 Sobic003G061800 Sobic010G210200--Sobic003G061800 Sobic003G442500 Sobic003G442500 Sobic010G210200--Sobic003G442500 Sobic005G217200 Sobic005G217200 Sobic010G210200--Sobic005G217200 Sobic009G210600 Sobic009G210600 Sobic010G210200--Sobic009G210600 Sobic010G210200--Sobic003G061400 Sobic002G087800 Sobic002G087800 Sobic005G024900--Sobic002G087800 Sobic005G024900--Sobic001G132000 Sobic005G024900--Sobic003G061400 Sobic003G440900 Sobic003G440900 Sobic005G024900--Sobic003G440900 Sobic003G241500 Sobic003G241500 Sobic005G024900--Sobic003G241500 Sobic004G333200 Sobic004G333200 Sobic005G024900--Sobic004G333200 Sobic006G244400 Sobic006G244400 Sobic005G024900--Sobic006G244400 Sobic005G152200 Sobic005G152200 Sobic005G024900--Sobic005G152200 Sobic006G127100 Sobic006G127100 Sobic005G024900--Sobic006G127100 Sobic004G101900--Sobic002G304000 Sobic002G215700 Sobic002G215700 Sobic004G101900--Sobic002G215700 Sobic001G325200 Sobic001G325200 Sobic004G101900--Sobic001G325200 Sobic009G226300 Sobic009G226300 Sobic004G101900--Sobic009G226300 Sobic009G054500 Sobic009G054500 Sobic004G101900--Sobic009G054500 Sobic008G062200 Sobic008G062200 Sobic004G101900--Sobic008G062200 Sobic003G148800 Sobic003G148800 Sobic004G101900--Sobic003G148800 Sobic004G124200 Sobic004G124200 Sobic004G101900--Sobic004G124200 Sobic001G015500 Sobic001G015500 Sobic004G101900--Sobic001G015500 Sobic003G061400--Sobic004G333200 Sobic010G176700 Sobic010G176700 Sobic003G061400--Sobic010G176700 Sobic003G061400--Sobic003G442500 Sobic003G061400--Sobic001G132000 Sobic003G061400--Sobic005G215900 Sobic003G061400--Sobic010G210200 Sobic003G061400--Sobic005G024900 Sobic009G016800 Sobic009G016800 Sobic003G061400--Sobic009G016800 Sobic003G061400--Sobic006G127100 Sobic007G219900--Sobic006G127100 Sobic005G018500 Sobic005G018500 Sobic007G219900--Sobic005G018500 Sobic003G366400 Sobic003G366400 Sobic007G219900--Sobic003G366400 Sobic007G219900--Sobic009G054500 Sobic007G219900--Sobic003G148800 Sobic004G260000 Sobic004G260000 Sobic007G219900--Sobic004G260000 Sobic007G219900--Sobic002G215700 Sobic007G219900--Sobic009G226300 Sobic001G227800 Sobic001G227800 Sobic007G219900--Sobic001G227800 Sobic005G079900--Sobic004G101900 Sobic005G079900--Sobic009G234800 Sobic005G079900--Sobic005G231900 Sobic003G303300 Sobic003G303300 Sobic005G079900--Sobic003G303300 Sobic001G488500 Sobic001G488500 Sobic005G079900--Sobic001G488500 Sobic005G079900--Sobic001G512800 Sobic005G079900--Sobic002G215700 Sobic007G068100 Sobic007G068100 Sobic005G079900--Sobic007G068100 Sobic004G246200 Sobic004G246200 Sobic005G079900--Sobic004G246200 Sobic002G304000--Sobic009G226300 Sobic002G304000--Sobic009G054500 Sobic002G304000--Sobic004G101900 Sobic002G304000--Sobic003G148800 Sobic002G304000--Sobic002G215700 Sobic002G304000--Sobic008G062200 Sobic002G304000--Sobic001G325200 Sobic003G355600 Sobic003G355600 Sobic002G304000--Sobic003G355600 Sobic003G105800 Sobic003G105800 Sobic002G304000--Sobic003G105800
Octagon: transcription factors


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