Gene annotation
Transcriptome id Sobic.006G119200.1
Synonym Sb06g020020
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
copper methylamine oxidase precursor, putative, expressed
UniProt C5YAF5
Pfam PF02727 PF02728 PF01179
Panther DB PTHR10638 PTHR10638:SF34
NCBI CDD -
KEGG Orthology K00276; AOC3, AOC2, primary-amine oxidase
Gene Ontology GO:0009308; amine metabolic process GO:0008131primary amine oxidase activity GO:0005507copper ion binding


Orthologs (automatic annotation)
TAIR AT2G42490 : Copper amine oxidase family protein
RAP-DB (Rice) LOC_Os04g40040.1 : copper methylamine oxidase precursor, putative, expressed
MaizeGDB (Corn) Zm00025a011011
Brachypodium KQJ83144 , KQK00069
Barley HORVU2Hr1G082420.8 , HORVU2Hr1G082420.4 , HORVU2Hr1G082420.5 , HORVU2Hr1G082420.6 , HORVU2Hr1G082420.1 , HORVU2Hr1G082420.2 , HORVU2Hr1G082420.3 , HORVU2Hr1G082420.10 , HORVU6Hr1G053060.2 , HORVU6Hr1G053060.3 , HORVU6Hr1G053060.1 , HORVU6Hr1G053060.6 , HORVU6Hr1G053060.7 , HORVU6Hr1G053060.4 , HORVU6Hr1G053060.5 , HORVU6Hr1G053060.8 , HORVU6Hr1G053060.9 , HORVU2Hr1G082420.7 , HORVU2Hr1G082440.10 , HORVU2Hr1G082440.4 , HORVU6Hr1G053060.13 , HORVU2Hr1G082440.1 , HORVU2Hr1G082440.9 , HORVU6Hr1G053060.10 , HORVU6Hr1G053060.11
Wheat TraesCS2D02G335300 , TraesCS2D02G335300 , TraesCS2D02G335300 , TraesCS6D02G191300 , TraesCS6D02G191300 , TraesCS2B02G354400 , TraesCS2B02G354400 , TraesCS2B02G354400 , TraesCS2B02G354400 , TraesCS6A02G207600 , TraesCS6A02G207600 , TraesCS6A02G207600 , TraesCS2A02G327600 , TraesCS2A02G327600 , TraesCS6B02G236300 , TraesCS6B02G236300 , TraesCS6B02G236300 , TraesCS6B02G236300
Populus PNT01096 , PNT01097 , PNT01095 , PNT10155


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G386400 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
2 Sobic.001G132000 fumarylacetoacetase, putative, expressed K01557: acylpyruvate hydrolase
3 Sobic.010G016400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxisomal biogenesis factor 11, putative, expressed -
4 Sobic.009G167700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
5 Sobic.002G155400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@serine/threonine-protein kinase BRI1-like 1 precursor, putative, expressed -
6 Sobic.009G234800 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
7 Sobic.001G512800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
8 Sobic.005G231900 mitochondrial carrier protein, putative, expressed K15103: UCP2_3, solute carrier family 25 (mitochondrial uncoupling protein), member 8/9
9 Sobic.004G347300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@thioredoxin, putative, expressed -
10 Sobic.002G355200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@BTBN16 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed -
11 Sobic.003G149200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed -
12 Sobic.002G322900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@integral membrane protein DUF6 containing protein, expressed -
13 Sobic.001G488500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"OsFBK12(Ortholog in rice:Chen et al., 2013)"(PubMedID : 31659851)@OsFBK12 - F-box domain and kelch repeat containing protein, expressed -
14 Sobic.003G316300 insulin-degrading enzyme, putative, expressed K01408: IDE, insulysin
15 Sobic.004G106900 "C3 PTPC, root-inducible gene"(PubMedID : 2308851)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoenolphyruvate carboxylase(PubMedID : 26904072)@phosphoenolpyruvate carboxylase, putative, expressed K01595: phosphoenolpyruvate carboxylase
16 Sobic.009G004200 MAC/Perforin domain containing protein, putative, expressed -
17 Sobic.001G322700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@5-oxoprolinase, putative, expressed K01469: OPLAH, OXP1, 5-oxoprolinase (ATP-hydrolysing)
18 Sobic.005G079900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@F-box domain containing protein, expressed -
19 Sobic.005G139400 SNARE associated Golgi protein, putative, expressed -
20 Sobic.008G044000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic006G119200 Sobic006G119200 Sobic001G386400 Sobic001G386400 Sobic006G119200--Sobic001G386400 Sobic001G132000 Sobic001G132000 Sobic006G119200--Sobic001G132000 Sobic010G016400 Sobic010G016400 Sobic006G119200--Sobic010G016400 Sobic009G167700 Sobic009G167700 Sobic006G119200--Sobic009G167700 Sobic002G155400 Sobic002G155400 Sobic006G119200--Sobic002G155400 Sobic009G234800 Sobic009G234800 Sobic006G119200--Sobic009G234800 Sobic001G512800 Sobic001G512800 Sobic006G119200--Sobic001G512800 Sobic005G231900 Sobic005G231900 Sobic006G119200--Sobic005G231900 Sobic004G347300 Sobic004G347300 Sobic006G119200--Sobic004G347300 Sobic001G386400--Sobic006G119200 Sobic001G386400--Sobic009G167700 Sobic009G000200 Sobic009G000200 Sobic001G386400--Sobic009G000200 Sobic003G316300 Sobic003G316300 Sobic001G386400--Sobic003G316300 Sobic001G386400--Sobic002G155400 Sobic010G161450 Sobic010G161450 Sobic001G386400--Sobic010G161450 Sobic004G106900 Sobic004G106900 Sobic001G386400--Sobic004G106900 Sobic002G024100 Sobic002G024100 Sobic001G386400--Sobic002G024100 Sobic004G341200 Sobic004G341200 Sobic001G386400--Sobic004G341200 Sobic001G132000--Sobic006G119200 Sobic001G132000--Sobic009G167700 Sobic010G210200 Sobic010G210200 Sobic001G132000--Sobic010G210200 Sobic005G024900 Sobic005G024900 Sobic001G132000--Sobic005G024900 Sobic004G101900 Sobic004G101900 Sobic001G132000--Sobic004G101900 Sobic003G061400 Sobic003G061400 Sobic001G132000--Sobic003G061400 Sobic007G219900 Sobic007G219900 Sobic001G132000--Sobic007G219900 Sobic005G079900 Sobic005G079900 Sobic001G132000--Sobic005G079900 Sobic002G304000 Sobic002G304000 Sobic001G132000--Sobic002G304000 Sobic005G139400 Sobic005G139400 Sobic010G016400--Sobic005G139400 Sobic010G016400--Sobic009G167700 Sobic010G016400--Sobic004G347300 Sobic010G016400--Sobic006G119200 Sobic007G148800 Sobic007G148800 Sobic010G016400--Sobic007G148800 Sobic006G217700 Sobic006G217700 Sobic010G016400--Sobic006G217700 Sobic001G010400 Sobic001G010400 Sobic010G016400--Sobic001G010400 Sobic004G102400 Sobic004G102400 Sobic010G016400--Sobic004G102400 Sobic009G172500 Sobic009G172500 Sobic010G016400--Sobic009G172500 Sobic002G244100 Sobic002G244100 Sobic009G167700--Sobic002G244100 Sobic009G167700--Sobic004G341200 Sobic009G167700--Sobic004G102400 Sobic009G167700--Sobic001G386400 Sobic009G167700--Sobic010G016400 Sobic001G089800 Sobic001G089800 Sobic009G167700--Sobic001G089800 Sobic003G354400 Sobic003G354400 Sobic009G167700--Sobic003G354400 Sobic009G167700--Sobic001G132000 Sobic009G167700--Sobic006G119200 Sobic002G155400--Sobic001G386400 Sobic009G161401 Sobic009G161401 Sobic002G155400--Sobic009G161401 Sobic002G155400--Sobic006G119200 Sobic008G044000 Sobic008G044000 Sobic002G155400--Sobic008G044000 Sobic002G322900 Sobic002G322900 Sobic002G155400--Sobic002G322900 Sobic010G206000 Sobic010G206000 Sobic002G155400--Sobic010G206000 Sobic002G155400--Sobic001G512800 Sobic002G155400--Sobic004G341200 Sobic002G155400--Sobic004G106900 Sobic009G234800--Sobic005G079900 Sobic003G226200 Sobic003G226200 Sobic009G234800--Sobic003G226200 Sobic009G234800--Sobic006G119200 Sobic009G234800--Sobic005G231900 Sobic001G488500 Sobic001G488500 Sobic009G234800--Sobic001G488500 Sobic009G234800--Sobic001G512800 Sobic004G246200 Sobic004G246200 Sobic009G234800--Sobic004G246200 Sobic009G234800--Sobic010G016400 Sobic007G041400 Sobic007G041400 Sobic009G234800--Sobic007G041400 Sobic003G138200 Sobic003G138200 Sobic001G512800--Sobic003G138200 Sobic001G512800--Sobic002G322900 Sobic001G512800--Sobic010G206000 Sobic001G512800--Sobic004G246200 Sobic002G409500 Sobic002G409500 Sobic001G512800--Sobic002G409500 Sobic009G029600 Sobic009G029600 Sobic001G512800--Sobic009G029600 Sobic010G248900 Sobic010G248900 Sobic001G512800--Sobic010G248900 Sobic009G054500 Sobic009G054500 Sobic001G512800--Sobic009G054500 Sobic001G512800--Sobic005G079900 Sobic004G162400 Sobic004G162400 Sobic005G231900--Sobic004G162400 Sobic005G231900--Sobic001G488500 Sobic005G231900--Sobic005G079900 Sobic005G231900--Sobic004G101900 Sobic005G216000 Sobic005G216000 Sobic005G231900--Sobic005G216000 Sobic004G236600 Sobic004G236600 Sobic005G231900--Sobic004G236600 Sobic005G231900--Sobic002G304000 Sobic005G231900--Sobic002G322900 Sobic006G271200 Sobic006G271200 Sobic005G231900--Sobic006G271200 Sobic004G347300--Sobic010G016400 Sobic004G347300--Sobic005G139400 Sobic001G023200 Sobic001G023200 Sobic004G347300--Sobic001G023200 Sobic004G347300--Sobic006G119200 Sobic004G347300--Sobic007G148800 Sobic004G347300--Sobic001G132000 Sobic004G347300--Sobic001G010400 Sobic009G004200 Sobic009G004200 Sobic004G347300--Sobic009G004200 Sobic004G012400 Sobic004G012400 Sobic004G347300--Sobic004G012400
Octagon: transcription factors


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