Gene annotation
Transcriptome id Sobic.004G106900.1
Synonym PPC3, Sb04g008720, ATPPC3, CP21;phosphoenolpyruvate carboxylase 3 (SbPPC3), phosphoenolpyruvate carboxylase 3 (SbPPC3), CP21;PEPC
Functional annotation "C3 PTPC, root-inducible gene" (PubMedID : 2308851)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
phosphoenolphyruvate carboxylase (PubMedID : 26904072)
phosphoenolpyruvate carboxylase, putative, expressed
UniProt P29195 , C5XYZ9
Pfam PF00311
Panther DB PTHR30523 PTHR30523:SF10
NCBI CDD -
KEGG Orthology K01595; phosphoenolpyruvate carboxylase
Gene Ontology GO:0015977; carbon fixation GO:0008964phosphoenolpyruvate carboxylase activity GO:0006099tricarboxylic acid cycle


Orthologs (automatic annotation)
TAIR AT3G14940 : phosphoenolpyruvate carboxylase 3
RAP-DB (Rice) LOC_Os02g14770.3 : phosphoenolpyruvate carboxylase, putative, expressed
MaizeGDB (Corn) Zm00025a050966 , Zm00025a019988 , Zm00025a056769 , Zm00025a006609 , Zm00025a034476 , Zm00025a012975 , Zm00025a039995
Brachypodium KQK18156 , KQK18155 , KQJ94205 , KQK03254
Barley HORVU5Hr1G055350.5 , HORVU5Hr1G055350.4 , HORVU5Hr1G055350.6 , HORVU5Hr1G055350.1 , HORVU5Hr1G055350.3 , HORVU5Hr1G055350.2 , HORVU5Hr1G055350.8 , HORVU3Hr1G073020.9 , HORVU3Hr1G073020.8 , HORVU3Hr1G073020.1 , HORVU3Hr1G073020.3 , HORVU3Hr1G073020.2 , HORVU3Hr1G073020.5 , HORVU3Hr1G073020.4 , HORVU3Hr1G073020.7 , HORVU3Hr1G073020.6 , HORVU6Hr1G048410.3 , HORVU6Hr1G048410.2 , HORVU6Hr1G048410.1 , HORVU6Hr1G048410.7 , HORVU6Hr1G048410.6 , HORVU6Hr1G048410.5 , HORVU6Hr1G048410.4 , HORVU6Hr1G048410.9 , HORVU6Hr1G048410.8 , HORVU6Hr1G048410.13 , HORVU6Hr1G048410.12 , HORVU6Hr1G048410.11 , HORVU6Hr1G048410.10 , HORVU6Hr1G048410.14 , HORVU3Hr1G073020.11 , HORVU3Hr1G073020.10 , HORVU7Hr1G080510.12 , HORVU7Hr1G080510.11 , HORVU7Hr1G080510.10 , HORVU7Hr1G080510.9 , HORVU7Hr1G080510.8 , HORVU5Hr1G055350.11 , HORVU5Hr1G055350.10 , HORVU7Hr1G080510.3 , HORVU7Hr1G080510.2 , HORVU7Hr1G080510.1 , HORVU7Hr1G080510.7 , HORVU7Hr1G080510.6 , HORVU7Hr1G080510.5 , HORVU7Hr1G080510.4
Wheat TraesCS3D02G295200 , TraesCS6B02G223100 , TraesCS3B02G329800 , TraesCS7D02G333900 , TraesCS6A02G195600 , TraesCS7A02G345400 , TraesCS3A02G306700 , TraesCS6D02G183200 , TraesCS6D02G183200 , TraesCS6D02G183200 , TraesCS5A02G181800 , TraesCS7B02G237900 , TraesCS5D02G186200
Populus PNT59122 , PNT59121 , PNT59120 , PNT12858 , PNT12859 , PNT12853 , PNT12856 , PNT12857 , PNT12854 , PNT12855 , PNT59118 , PNT59119


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cDNA sequences
Sobic.004G106900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G341200 Glutathione reductases(PubMedID : 23783412)@glutathione reductase, putative, expressed K00383: GSR, glutathione reductase (NADPH)
2 Sobic.009G210300 similar to Calcium sensing protein(PubMedID : 29862293)@Cellular calcium signals(PubMedID : 19860013)@calcineurin B, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
3 Sobic.002G155400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@serine/threonine-protein kinase BRI1-like 1 precursor, putative, expressed -
4 Sobic.001G386400 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
5 Sobic.006G119200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@copper methylamine oxidase precursor, putative, expressed K00276: AOC3, AOC2, primary-amine oxidase
6 Sobic.009G167700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
7 Sobic.005G139400 SNARE associated Golgi protein, putative, expressed -
8 Sobic.003G149200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed -
9 Sobic.009G234800 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
10 Sobic.001G089800 nuclear prelamin A recognition factor, putative, expressed -
11 Sobic.010G016400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxisomal biogenesis factor 11, putative, expressed -
12 Sobic.001G512800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
13 Sobic.002G088900 DUF538 domain containing protein, putative, expressed -
14 Sobic.006G247100 plasma membrane ATPase, putative, expressed K01535: PMA1, H+-transporting ATPase
15 Sobic.002G322900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@integral membrane protein DUF6 containing protein, expressed -
16 Sobic.010G161450 - -
17 Sobic.002G236400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin-independent growth promoter protein, putative, expressed -
18 Sobic.003G080900 Ser/Thr protein kinase, putative, expressed -
19 Sobic.004G347300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@thioredoxin, putative, expressed -
20 Sobic.002G024100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lectin-like receptor kinase, putative, expressed -


Gene co-expression network
sample Sobic004G106900 Sobic004G106900 Sobic004G341200 Sobic004G341200 Sobic004G106900--Sobic004G341200 Sobic009G210300 Sobic009G210300 Sobic004G106900--Sobic009G210300 Sobic002G155400 Sobic002G155400 Sobic004G106900--Sobic002G155400 Sobic001G386400 Sobic001G386400 Sobic004G106900--Sobic001G386400 Sobic006G119200 Sobic006G119200 Sobic004G106900--Sobic006G119200 Sobic009G167700 Sobic009G167700 Sobic004G106900--Sobic009G167700 Sobic005G139400 Sobic005G139400 Sobic004G106900--Sobic005G139400 Sobic003G149200 Sobic003G149200 Sobic004G106900--Sobic003G149200 Sobic009G234800 Sobic009G234800 Sobic004G106900--Sobic009G234800 Sobic001G089800 Sobic001G089800 Sobic004G341200--Sobic001G089800 Sobic002G322900 Sobic002G322900 Sobic004G341200--Sobic002G322900 Sobic004G341200--Sobic009G167700 Sobic001G512800 Sobic001G512800 Sobic004G341200--Sobic001G512800 Sobic009G193700 Sobic009G193700 Sobic004G341200--Sobic009G193700 Sobic001G488500 Sobic001G488500 Sobic004G341200--Sobic001G488500 Sobic001G003000 Sobic001G003000 Sobic004G341200--Sobic001G003000 Sobic004G236600 Sobic004G236600 Sobic004G341200--Sobic004G236600 Sobic003G338400 Sobic003G338400 Sobic004G341200--Sobic003G338400 Sobic009G210300--Sobic004G106900 Sobic005G024900 Sobic005G024900 Sobic009G210300--Sobic005G024900 Sobic009G210300--Sobic009G167700 Sobic005G152200 Sobic005G152200 Sobic009G210300--Sobic005G152200 Sobic001G334600 Sobic001G334600 Sobic009G210300--Sobic001G334600 Sobic001G010400 Sobic001G010400 Sobic009G210300--Sobic001G010400 Sobic001G196300 Sobic001G196300 Sobic009G210300--Sobic001G196300 Sobic004G347300 Sobic004G347300 Sobic009G210300--Sobic004G347300 Sobic009G210300--Sobic004G341200 Sobic002G155400--Sobic001G386400 Sobic009G161401 Sobic009G161401 Sobic002G155400--Sobic009G161401 Sobic002G155400--Sobic006G119200 Sobic008G044000 Sobic008G044000 Sobic002G155400--Sobic008G044000 Sobic002G155400--Sobic002G322900 Sobic010G206000 Sobic010G206000 Sobic002G155400--Sobic010G206000 Sobic002G155400--Sobic001G512800 Sobic002G155400--Sobic004G341200 Sobic002G155400--Sobic004G106900 Sobic001G386400--Sobic006G119200 Sobic001G386400--Sobic009G167700 Sobic009G000200 Sobic009G000200 Sobic001G386400--Sobic009G000200 Sobic003G316300 Sobic003G316300 Sobic001G386400--Sobic003G316300 Sobic001G386400--Sobic002G155400 Sobic010G161450 Sobic010G161450 Sobic001G386400--Sobic010G161450 Sobic001G386400--Sobic004G106900 Sobic002G024100 Sobic002G024100 Sobic001G386400--Sobic002G024100 Sobic001G386400--Sobic004G341200 Sobic006G119200--Sobic001G386400 Sobic001G132000 Sobic001G132000 Sobic006G119200--Sobic001G132000 Sobic010G016400 Sobic010G016400 Sobic006G119200--Sobic010G016400 Sobic006G119200--Sobic009G167700 Sobic006G119200--Sobic002G155400 Sobic006G119200--Sobic009G234800 Sobic006G119200--Sobic001G512800 Sobic005G231900 Sobic005G231900 Sobic006G119200--Sobic005G231900 Sobic006G119200--Sobic004G347300 Sobic002G244100 Sobic002G244100 Sobic009G167700--Sobic002G244100 Sobic009G167700--Sobic004G341200 Sobic004G102400 Sobic004G102400 Sobic009G167700--Sobic004G102400 Sobic009G167700--Sobic001G386400 Sobic009G167700--Sobic010G016400 Sobic009G167700--Sobic001G089800 Sobic003G354400 Sobic003G354400 Sobic009G167700--Sobic003G354400 Sobic009G167700--Sobic001G132000 Sobic009G167700--Sobic006G119200 Sobic005G139400--Sobic010G016400 Sobic005G139400--Sobic004G347300 Sobic006G232000 Sobic006G232000 Sobic005G139400--Sobic006G232000 Sobic005G139400--Sobic001G010400 Sobic006G192700 Sobic006G192700 Sobic005G139400--Sobic006G192700 Sobic002G113800 Sobic002G113800 Sobic005G139400--Sobic002G113800 Sobic005G139400--Sobic001G132000 Sobic007G148800 Sobic007G148800 Sobic005G139400--Sobic007G148800 Sobic004G185900 Sobic004G185900 Sobic005G139400--Sobic004G185900 Sobic001G322700 Sobic001G322700 Sobic003G149200--Sobic001G322700 Sobic006G091700 Sobic006G091700 Sobic003G149200--Sobic006G091700 Sobic005G215900 Sobic005G215900 Sobic003G149200--Sobic005G215900 Sobic006G030700 Sobic006G030700 Sobic003G149200--Sobic006G030700 Sobic009G161000 Sobic009G161000 Sobic003G149200--Sobic009G161000 Sobic005G216000 Sobic005G216000 Sobic003G149200--Sobic005G216000 Sobic001G249300 Sobic001G249300 Sobic003G149200--Sobic001G249300 Sobic003G087200 Sobic003G087200 Sobic003G149200--Sobic003G087200 Sobic004G101900 Sobic004G101900 Sobic003G149200--Sobic004G101900 Sobic005G079900 Sobic005G079900 Sobic009G234800--Sobic005G079900 Sobic003G226200 Sobic003G226200 Sobic009G234800--Sobic003G226200 Sobic009G234800--Sobic006G119200 Sobic009G234800--Sobic005G231900 Sobic009G234800--Sobic001G488500 Sobic009G234800--Sobic001G512800 Sobic004G246200 Sobic004G246200 Sobic009G234800--Sobic004G246200 Sobic009G234800--Sobic010G016400 Sobic007G041400 Sobic007G041400 Sobic009G234800--Sobic007G041400
Octagon: transcription factors


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