Gene annotation
Transcriptome id Sobic.002G024100.1
Synonym Sb02g002220, RLK
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
lectin-like receptor kinase, putative, expressed
UniProt C5X8S8
Pfam PF00069 PF00139
Panther DB PTHR27007 PTHR27007:SF41
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT3G53810 : Concanavalin A-like lectin protein kinase family protein
RAP-DB (Rice) LOC_Os07g03820.1 : lectin-like receptor kinase, putative, expressed
MaizeGDB (Corn) Zm00025a006801 , Zm00025a001674 , Zm00025a045639
Brachypodium KQK20938
Barley HORVU6Hr1G025340.1 , HORVU6Hr1G025340.4 , HORVU1Hr1G009250.24 , HORVU1Hr1G009250.25 , HORVU1Hr1G009250.27 , HORVU1Hr1G009250.23 , HORVU1Hr1G009250.28 , HORVU1Hr1G009250.29 , HORVU1Hr1G009180.1 , HORVU1Hr1G009250.8 , HORVU1Hr1G009250.7 , HORVU1Hr1G009250.36 , HORVU1Hr1G009250.35 , HORVU1Hr1G009250.34 , HORVU1Hr1G009250.33 , HORVU1Hr1G009250.30 , HORVU5Hr1G104850.2 , HORVU5Hr1G104850.1 , HORVU6Hr1G025340.2 , HORVU6Hr1G025340.3 , HORVU6Hr1G025340.5
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.002G024100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G152200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed K00815: tyrosine aminotransferase
2 Sobic.001G386400 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
3 Sobic.003G280900 NADP-malic enzyme(PubMedID : 26904072)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
4 Sobic.006G096400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
5 Sobic.002G242500 Expressed in older stem(PubMedID : 28649278)@WRKY90, expressed K18835: WRKY transcription factor 2
6 Sobic.003G229200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450 72A1, putative, expressed K07424: cytochrome P450 family 3 subfamily A
7 Sobic.010G016400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxisomal biogenesis factor 11, putative, expressed -
8 Sobic.009G167700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
9 Sobic.009G172500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@aminotransferase, putative, expressed K00827: alanine-glyoxylate transaminase / (R)-3-amino-2-methylpropionate-pyruvate transaminase
10 Sobic.003G167500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@heavy metal-associated domain containing protein, expressed -
11 Sobic.007G098400 tyrosine protein kinase domain containing protein, putative, expressed -
12 Sobic.009G161401 - -
13 Sobic.010G161450 - -
14 Sobic.009G241700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed -
15 Sobic.001G010400 snRK1-interacting protein 1, putative, expressed -
16 Sobic.004G058000 VQ domain containing protein, putative, expressed -
17 Sobic.009G016800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
18 Sobic.005G211400 cytochrome P450, putative, expressed -
19 Sobic.009G111600 expressed protein -
20 Sobic.004G276100 expressed protein -


Gene co-expression network
sample Sobic002G024100 Sobic002G024100 Sobic005G152200 Sobic005G152200 Sobic002G024100--Sobic005G152200 Sobic001G386400 Sobic001G386400 Sobic002G024100--Sobic001G386400 Sobic003G280900 Sobic003G280900 Sobic002G024100--Sobic003G280900 Sobic006G096400 Sobic006G096400 Sobic002G024100--Sobic006G096400 Sobic002G242500 Sobic002G242500 Sobic002G024100--Sobic002G242500 Sobic003G229200 Sobic003G229200 Sobic002G024100--Sobic003G229200 Sobic010G016400 Sobic010G016400 Sobic002G024100--Sobic010G016400 Sobic009G167700 Sobic009G167700 Sobic002G024100--Sobic009G167700 Sobic009G172500 Sobic009G172500 Sobic002G024100--Sobic009G172500 Sobic005G152200--Sobic002G024100 Sobic005G024900 Sobic005G024900 Sobic005G152200--Sobic005G024900 Sobic005G152200--Sobic009G172500 Sobic005G152200--Sobic006G096400 Sobic005G152200--Sobic003G229200 Sobic009G161401 Sobic009G161401 Sobic005G152200--Sobic009G161401 Sobic009G210300 Sobic009G210300 Sobic005G152200--Sobic009G210300 Sobic007G078100 Sobic007G078100 Sobic005G152200--Sobic007G078100 Sobic001G010400 Sobic001G010400 Sobic005G152200--Sobic001G010400 Sobic006G119200 Sobic006G119200 Sobic001G386400--Sobic006G119200 Sobic001G386400--Sobic009G167700 Sobic009G000200 Sobic009G000200 Sobic001G386400--Sobic009G000200 Sobic003G316300 Sobic003G316300 Sobic001G386400--Sobic003G316300 Sobic002G155400 Sobic002G155400 Sobic001G386400--Sobic002G155400 Sobic010G161450 Sobic010G161450 Sobic001G386400--Sobic010G161450 Sobic004G106900 Sobic004G106900 Sobic001G386400--Sobic004G106900 Sobic001G386400--Sobic002G024100 Sobic004G341200 Sobic004G341200 Sobic001G386400--Sobic004G341200 Sobic002G249000 Sobic002G249000 Sobic003G280900--Sobic002G249000 Sobic003G333400 Sobic003G333400 Sobic003G280900--Sobic003G333400 Sobic003G280900--Sobic001G010400 Sobic004G276100 Sobic004G276100 Sobic003G280900--Sobic004G276100 Sobic004G050000 Sobic004G050000 Sobic003G280900--Sobic004G050000 Sobic007G195100 Sobic007G195100 Sobic003G280900--Sobic007G195100 Sobic001G026900 Sobic001G026900 Sobic003G280900--Sobic001G026900 Sobic005G117400 Sobic005G117400 Sobic003G280900--Sobic005G117400 Sobic002G090200 Sobic002G090200 Sobic003G280900--Sobic002G090200 Sobic006G096400--Sobic009G172500 Sobic006G096400--Sobic010G016400 Sobic008G179500 Sobic008G179500 Sobic006G096400--Sobic008G179500 Sobic006G096400--Sobic001G026900 Sobic006G096400--Sobic001G010400 Sobic002G381300 Sobic002G381300 Sobic006G096400--Sobic002G381300 Sobic006G096400--Sobic002G024100 Sobic009G111600 Sobic009G111600 Sobic006G096400--Sobic009G111600 Sobic006G096400--Sobic003G229200 Sobic002G294200 Sobic002G294200 Sobic002G242500--Sobic002G294200 Sobic007G098400 Sobic007G098400 Sobic002G242500--Sobic007G098400 Sobic004G145200 Sobic004G145200 Sobic002G242500--Sobic004G145200 Sobic003G049300 Sobic003G049300 Sobic002G242500--Sobic003G049300 Sobic001G049200 Sobic001G049200 Sobic002G242500--Sobic001G049200 Sobic003G167500 Sobic003G167500 Sobic002G242500--Sobic003G167500 Sobic007G221100 Sobic007G221100 Sobic002G242500--Sobic007G221100 Sobic001G403700 Sobic001G403700 Sobic002G242500--Sobic001G403700 Sobic005G211400 Sobic005G211400 Sobic002G242500--Sobic005G211400 Sobic003G229200--Sobic009G161401 Sobic001G302500 Sobic001G302500 Sobic003G229200--Sobic001G302500 Sobic003G229200--Sobic006G096400 Sobic003G229200--Sobic002G024100 Sobic003G273700 Sobic003G273700 Sobic003G229200--Sobic003G273700 Sobic003G080900 Sobic003G080900 Sobic003G229200--Sobic003G080900 Sobic004G347300 Sobic004G347300 Sobic003G229200--Sobic004G347300 Sobic003G229200--Sobic007G078100 Sobic003G229200--Sobic005G152200 Sobic005G139400 Sobic005G139400 Sobic010G016400--Sobic005G139400 Sobic010G016400--Sobic009G167700 Sobic010G016400--Sobic004G347300 Sobic010G016400--Sobic006G119200 Sobic007G148800 Sobic007G148800 Sobic010G016400--Sobic007G148800 Sobic006G217700 Sobic006G217700 Sobic010G016400--Sobic006G217700 Sobic010G016400--Sobic001G010400 Sobic004G102400 Sobic004G102400 Sobic010G016400--Sobic004G102400 Sobic010G016400--Sobic009G172500 Sobic002G244100 Sobic002G244100 Sobic009G167700--Sobic002G244100 Sobic009G167700--Sobic004G341200 Sobic009G167700--Sobic004G102400 Sobic009G167700--Sobic001G386400 Sobic009G167700--Sobic010G016400 Sobic001G089800 Sobic001G089800 Sobic009G167700--Sobic001G089800 Sobic003G354400 Sobic003G354400 Sobic009G167700--Sobic003G354400 Sobic001G132000 Sobic001G132000 Sobic009G167700--Sobic001G132000 Sobic009G167700--Sobic006G119200 Sobic009G172500--Sobic006G096400 Sobic009G172500--Sobic010G016400 Sobic010G206000 Sobic010G206000 Sobic009G172500--Sobic010G206000 Sobic002G322900 Sobic002G322900 Sobic009G172500--Sobic002G322900 Sobic009G172500--Sobic002G381300 Sobic009G016800 Sobic009G016800 Sobic009G172500--Sobic009G016800 Sobic009G172500--Sobic005G139400 Sobic009G172500--Sobic002G024100 Sobic009G172500--Sobic009G161401
Octagon: transcription factors


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