Gene annotation
Transcriptome id Sobic.005G152200.1
Synonym Sb05g021610
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
aminotransferase, classes I and II, domain containing protein, expressed
UniProt C5Y4D9
Pfam PF01212
Panther DB PTHR11751 PTHR11751:SF363
NCBI CDD -
KEGG Orthology K00815; tyrosine aminotransferase
Gene Ontology GO:0016829; lyase activity GO:0006520cellular amino acid metabolic process


Orthologs (automatic annotation)
TAIR AT5G53970 : Tyrosine transaminase family protein
RAP-DB (Rice) LOC_Os11g35040.1 : aminotransferase, classes I and II, domain containing protein, expressed
MaizeGDB (Corn) Zm00025a015736 , Zm00025a034096
Brachypodium KQJ88214
Barley HORVU1Hr1G015090.6 , HORVU1Hr1G015090.7 , HORVU1Hr1G015090.4 , HORVU1Hr1G015090.5 , HORVU1Hr1G015090.2 , HORVU1Hr1G015090.3 , HORVU1Hr1G015090.1
Wheat TraesCS1D02G073000 , TraesCS1D02G073000 , TraesCS1D02G073000 , TraesCS1B02G089000 , TraesCS1A02G070500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G024100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lectin-like receptor kinase, putative, expressed -
2 Sobic.005G024900 major facilitator superfamily antiporter, putative, expressed -
3 Sobic.009G172500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@aminotransferase, putative, expressed K00827: alanine-glyoxylate transaminase / (R)-3-amino-2-methylpropionate-pyruvate transaminase
4 Sobic.006G096400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
5 Sobic.003G229200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450 72A1, putative, expressed K07424: cytochrome P450 family 3 subfamily A
6 Sobic.009G161401 - -
7 Sobic.009G210300 similar to Calcium sensing protein(PubMedID : 29862293)@Cellular calcium signals(PubMedID : 19860013)@calcineurin B, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
8 Sobic.007G078100 UPF0041 domain containing protein, putative, expressed -
9 Sobic.001G010400 snRK1-interacting protein 1, putative, expressed -
10 Sobic.007G196300 ubiquitin-associated protein, putative, expressed -
11 Sobic.004G106900 "C3 PTPC, root-inducible gene"(PubMedID : 2308851)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoenolphyruvate carboxylase(PubMedID : 26904072)@phosphoenolpyruvate carboxylase, putative, expressed K01595: phosphoenolpyruvate carboxylase
12 Sobic.007G136100 uncharacterized protein family UPF0016 domain containing protein, expressed -
13 Sobic.004G311000 integral membrane protein DUF6 containing protein, expressed -
14 Sobic.002G422500 short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
15 Sobic.001G148900 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed K00549: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
16 Sobic.002G329100 TKL_IRAK_DUF26-ld.3 - DUF26 kinases have homology to DUF26 containing loci, expressed -
17 Sobic.009G167700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
18 Sobic.010G044200 GLTP domain containing protein, putative, expressed -
19 Sobic.001G364500 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
20 Sobic.003G280900 NADP-malic enzyme(PubMedID : 26904072)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)


Gene co-expression network
sample Sobic005G152200 Sobic005G152200 Sobic002G024100 Sobic002G024100 Sobic005G152200--Sobic002G024100 Sobic005G024900 Sobic005G024900 Sobic005G152200--Sobic005G024900 Sobic009G172500 Sobic009G172500 Sobic005G152200--Sobic009G172500 Sobic006G096400 Sobic006G096400 Sobic005G152200--Sobic006G096400 Sobic003G229200 Sobic003G229200 Sobic005G152200--Sobic003G229200 Sobic009G161401 Sobic009G161401 Sobic005G152200--Sobic009G161401 Sobic009G210300 Sobic009G210300 Sobic005G152200--Sobic009G210300 Sobic007G078100 Sobic007G078100 Sobic005G152200--Sobic007G078100 Sobic001G010400 Sobic001G010400 Sobic005G152200--Sobic001G010400 Sobic002G024100--Sobic005G152200 Sobic001G386400 Sobic001G386400 Sobic002G024100--Sobic001G386400 Sobic003G280900 Sobic003G280900 Sobic002G024100--Sobic003G280900 Sobic002G024100--Sobic006G096400 Sobic002G242500 Sobic002G242500 Sobic002G024100--Sobic002G242500 Sobic002G024100--Sobic003G229200 Sobic010G016400 Sobic010G016400 Sobic002G024100--Sobic010G016400 Sobic009G167700 Sobic009G167700 Sobic002G024100--Sobic009G167700 Sobic002G024100--Sobic009G172500 Sobic002G087800 Sobic002G087800 Sobic005G024900--Sobic002G087800 Sobic001G132000 Sobic001G132000 Sobic005G024900--Sobic001G132000 Sobic003G061400 Sobic003G061400 Sobic005G024900--Sobic003G061400 Sobic003G440900 Sobic003G440900 Sobic005G024900--Sobic003G440900 Sobic003G241500 Sobic003G241500 Sobic005G024900--Sobic003G241500 Sobic004G333200 Sobic004G333200 Sobic005G024900--Sobic004G333200 Sobic006G244400 Sobic006G244400 Sobic005G024900--Sobic006G244400 Sobic005G024900--Sobic005G152200 Sobic006G127100 Sobic006G127100 Sobic005G024900--Sobic006G127100 Sobic009G172500--Sobic006G096400 Sobic009G172500--Sobic010G016400 Sobic010G206000 Sobic010G206000 Sobic009G172500--Sobic010G206000 Sobic002G322900 Sobic002G322900 Sobic009G172500--Sobic002G322900 Sobic002G381300 Sobic002G381300 Sobic009G172500--Sobic002G381300 Sobic009G016800 Sobic009G016800 Sobic009G172500--Sobic009G016800 Sobic005G139400 Sobic005G139400 Sobic009G172500--Sobic005G139400 Sobic009G172500--Sobic002G024100 Sobic009G172500--Sobic009G161401 Sobic006G096400--Sobic009G172500 Sobic006G096400--Sobic010G016400 Sobic008G179500 Sobic008G179500 Sobic006G096400--Sobic008G179500 Sobic001G026900 Sobic001G026900 Sobic006G096400--Sobic001G026900 Sobic006G096400--Sobic001G010400 Sobic006G096400--Sobic002G381300 Sobic006G096400--Sobic002G024100 Sobic009G111600 Sobic009G111600 Sobic006G096400--Sobic009G111600 Sobic006G096400--Sobic003G229200 Sobic003G229200--Sobic009G161401 Sobic001G302500 Sobic001G302500 Sobic003G229200--Sobic001G302500 Sobic003G229200--Sobic006G096400 Sobic003G229200--Sobic002G024100 Sobic003G273700 Sobic003G273700 Sobic003G229200--Sobic003G273700 Sobic003G080900 Sobic003G080900 Sobic003G229200--Sobic003G080900 Sobic004G347300 Sobic004G347300 Sobic003G229200--Sobic004G347300 Sobic003G229200--Sobic007G078100 Sobic003G229200--Sobic005G152200 Sobic009G161401--Sobic003G229200 Sobic002G155400 Sobic002G155400 Sobic009G161401--Sobic002G155400 Sobic009G161401--Sobic001G302500 Sobic009G161401--Sobic009G172500 Sobic009G161401--Sobic002G024100 Sobic004G311000 Sobic004G311000 Sobic009G161401--Sobic004G311000 Sobic009G161401--Sobic003G080900 Sobic009G161401--Sobic003G273700 Sobic004G074500 Sobic004G074500 Sobic009G161401--Sobic004G074500 Sobic004G106900 Sobic004G106900 Sobic009G210300--Sobic004G106900 Sobic009G210300--Sobic005G024900 Sobic009G210300--Sobic009G167700 Sobic009G210300--Sobic005G152200 Sobic001G334600 Sobic001G334600 Sobic009G210300--Sobic001G334600 Sobic009G210300--Sobic001G010400 Sobic001G196300 Sobic001G196300 Sobic009G210300--Sobic001G196300 Sobic009G210300--Sobic004G347300 Sobic004G341200 Sobic004G341200 Sobic009G210300--Sobic004G341200 Sobic004G276100 Sobic004G276100 Sobic007G078100--Sobic004G276100 Sobic002G257300 Sobic002G257300 Sobic007G078100--Sobic002G257300 Sobic007G161400 Sobic007G161400 Sobic007G078100--Sobic007G161400 Sobic010G154700 Sobic010G154700 Sobic007G078100--Sobic010G154700 Sobic004G272800 Sobic004G272800 Sobic007G078100--Sobic004G272800 Sobic004G051700 Sobic004G051700 Sobic007G078100--Sobic004G051700 Sobic005G188100 Sobic005G188100 Sobic007G078100--Sobic005G188100 Sobic001G132100 Sobic001G132100 Sobic007G078100--Sobic001G132100 Sobic001G048832 Sobic001G048832 Sobic007G078100--Sobic001G048832 Sobic002G249000 Sobic002G249000 Sobic001G010400--Sobic002G249000 Sobic007G148800 Sobic007G148800 Sobic001G010400--Sobic007G148800 Sobic004G185900 Sobic004G185900 Sobic001G010400--Sobic004G185900 Sobic002G113800 Sobic002G113800 Sobic001G010400--Sobic002G113800 Sobic001G393800 Sobic001G393800 Sobic001G010400--Sobic001G393800 Sobic002G258100 Sobic002G258100 Sobic001G010400--Sobic002G258100 Sobic002G180600 Sobic002G180600 Sobic001G010400--Sobic002G180600 Sobic008G107500 Sobic008G107500 Sobic001G010400--Sobic008G107500 Sobic001G010400--Sobic010G016400
Octagon: transcription factors


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