Gene annotation
Transcriptome id Sobic.002G422500.1
Synonym Sb02g043370
Functional annotation short-chain dehydrogenase/reductase, putative, expressed
UniProt C5X5R0
Pfam PF00106
Panther DB PTHR24322 PTHR24322:SF376
NCBI CDD KOG1208; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
KEGG Orthology K15095; (+)-neomenthol dehydrogenase
Gene Ontology GO:0016491; oxidoreductase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT3G61220 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os07g48640.1 : short-chain dehydrogenase/reductase, putative, expressed
MaizeGDB (Corn) Zm00025a015469
Brachypodium -
Barley -
Wheat TraesCS2B02G116700 , TraesCS2D02G099300 , TraesCS2A02G099800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G193900 N-terminal asparagine amidohydrolase, putative, expressed K14662: protein N-terminal asparagine amidohydrolase
2 Sobic.003G440900 Invertase genes(PubMedID : 24456189)@"Beta-fructofuranosidase, cell wall Invertase 4 (Os)"(PubMedID : 27208977)@Sugar degradation(PubMedID : 27330561)@glycosyl hydrolases, putative, expressed K01193: INV, beta-fructofuranosidase
3 Sobic.001G456100 integral membrane protein, putative, expressed -
4 Sobic.003G273700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@uncharacterized protein PA4923, putative, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
5 Sobic.005G152200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed K00815: tyrosine aminotransferase
6 Sobic.010G203600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
7 Sobic.002G294200 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
8 Sobic.005G211400 cytochrome P450, putative, expressed -
9 Sobic.002G242500 Expressed in older stem(PubMedID : 28649278)@WRKY90, expressed K18835: WRKY transcription factor 2
10 Sobic.002G024100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lectin-like receptor kinase, putative, expressed -
11 Sobic.005G024900 major facilitator superfamily antiporter, putative, expressed -
12 Sobic.002G114800 CDPK - calcium-dependent protein kinase 18(PubMedID : 31721651)@CAMK_CAMK_like.32 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
13 Sobic.004G173600 OsPDIL5-3 protein disulfide isomerase PDIL5-3, expressed K09580: PDIA1, protein disulfide-isomerase A1
14 Sobic.007G136100 uncharacterized protein family UPF0016 domain containing protein, expressed -
15 Sobic.003G106300 3-beta-hydroxysteroid-Delta-isomerase, putative, expressed K01824: cholestenol Delta-isomerase
16 Sobic.007G021200 carrier, putative, expressed -
17 Sobic.003G259700 transmembrane protein 93, putative, expressed -
18 Sobic.009G210300 similar to Calcium sensing protein(PubMedID : 29862293)@Cellular calcium signals(PubMedID : 19860013)@calcineurin B, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
19 Sobic.001G328000 phenazine biosynthesis protein, putative, expressed -
20 Sobic.001G049200 AMP-binding enzyme, putative, expressed -


Gene co-expression network
sample Sobic002G422500 Sobic002G422500 Sobic010G193900 Sobic010G193900 Sobic002G422500--Sobic010G193900 Sobic003G440900 Sobic003G440900 Sobic002G422500--Sobic003G440900 Sobic001G456100 Sobic001G456100 Sobic002G422500--Sobic001G456100 Sobic003G273700 Sobic003G273700 Sobic002G422500--Sobic003G273700 Sobic005G152200 Sobic005G152200 Sobic002G422500--Sobic005G152200 Sobic010G203600 Sobic010G203600 Sobic002G422500--Sobic010G203600 Sobic002G294200 Sobic002G294200 Sobic002G422500--Sobic002G294200 Sobic005G211400 Sobic005G211400 Sobic002G422500--Sobic005G211400 Sobic002G242500 Sobic002G242500 Sobic002G422500--Sobic002G242500 Sobic007G136100 Sobic007G136100 Sobic010G193900--Sobic007G136100 Sobic010G002400 Sobic010G002400 Sobic010G193900--Sobic010G002400 Sobic006G176600 Sobic006G176600 Sobic010G193900--Sobic006G176600 Sobic010G193900--Sobic002G294200 Sobic004G173600 Sobic004G173600 Sobic010G193900--Sobic004G173600 Sobic002G114800 Sobic002G114800 Sobic010G193900--Sobic002G114800 Sobic004G081800 Sobic004G081800 Sobic010G193900--Sobic004G081800 Sobic001G283200 Sobic001G283200 Sobic010G193900--Sobic001G283200 Sobic001G049200 Sobic001G049200 Sobic010G193900--Sobic001G049200 Sobic002G117900 Sobic002G117900 Sobic003G440900--Sobic002G117900 Sobic005G024900 Sobic005G024900 Sobic003G440900--Sobic005G024900 Sobic003G440900--Sobic002G422500 Sobic007G196300 Sobic007G196300 Sobic003G440900--Sobic007G196300 Sobic003G440900--Sobic004G173600 Sobic002G087800 Sobic002G087800 Sobic003G440900--Sobic002G087800 Sobic003G440900--Sobic010G193900 Sobic006G247100 Sobic006G247100 Sobic003G440900--Sobic006G247100 Sobic003G440900--Sobic007G136100 Sobic006G230300 Sobic006G230300 Sobic001G456100--Sobic006G230300 Sobic010G194100 Sobic010G194100 Sobic001G456100--Sobic010G194100 Sobic001G456100--Sobic001G049200 Sobic001G456100--Sobic003G273700 Sobic007G221100 Sobic007G221100 Sobic001G456100--Sobic007G221100 Sobic007G157900 Sobic007G157900 Sobic001G456100--Sobic007G157900 Sobic001G456100--Sobic010G193900 Sobic009G238900 Sobic009G238900 Sobic001G456100--Sobic009G238900 Sobic001G456100--Sobic002G242500 Sobic001G302500 Sobic001G302500 Sobic003G273700--Sobic001G302500 Sobic010G192432 Sobic010G192432 Sobic003G273700--Sobic010G192432 Sobic003G273700--Sobic010G194100 Sobic003G273700--Sobic006G230300 Sobic002G283900 Sobic002G283900 Sobic003G273700--Sobic002G283900 Sobic003G273700--Sobic007G221100 Sobic003G389000 Sobic003G389000 Sobic003G273700--Sobic003G389000 Sobic003G273700--Sobic001G456100 Sobic010G161450 Sobic010G161450 Sobic003G273700--Sobic010G161450 Sobic002G024100 Sobic002G024100 Sobic005G152200--Sobic002G024100 Sobic005G152200--Sobic005G024900 Sobic009G172500 Sobic009G172500 Sobic005G152200--Sobic009G172500 Sobic006G096400 Sobic006G096400 Sobic005G152200--Sobic006G096400 Sobic003G229200 Sobic003G229200 Sobic005G152200--Sobic003G229200 Sobic009G161401 Sobic009G161401 Sobic005G152200--Sobic009G161401 Sobic009G210300 Sobic009G210300 Sobic005G152200--Sobic009G210300 Sobic007G078100 Sobic007G078100 Sobic005G152200--Sobic007G078100 Sobic001G010400 Sobic001G010400 Sobic005G152200--Sobic001G010400 Sobic006G061300 Sobic006G061300 Sobic010G203600--Sobic006G061300 Sobic007G119800 Sobic007G119800 Sobic010G203600--Sobic007G119800 Sobic009G235600 Sobic009G235600 Sobic010G203600--Sobic009G235600 Sobic001G386400 Sobic001G386400 Sobic010G203600--Sobic001G386400 Sobic010G203600--Sobic006G176600 Sobic010G203600--Sobic004G173600 Sobic007G011700 Sobic007G011700 Sobic010G203600--Sobic007G011700 Sobic010G203600--Sobic001G049200 Sobic010G203600--Sobic001G456100 Sobic002G294200--Sobic002G242500 Sobic004G274400 Sobic004G274400 Sobic002G294200--Sobic004G274400 Sobic009G179200 Sobic009G179200 Sobic002G294200--Sobic009G179200 Sobic002G294200--Sobic001G283200 Sobic002G294200--Sobic006G176600 Sobic006G148200 Sobic006G148200 Sobic002G294200--Sobic006G148200 Sobic002G294200--Sobic010G193900 Sobic006G281800 Sobic006G281800 Sobic002G294200--Sobic006G281800 Sobic010G064600 Sobic010G064600 Sobic002G294200--Sobic010G064600 Sobic009G241700 Sobic009G241700 Sobic005G211400--Sobic009G241700 Sobic007G098400 Sobic007G098400 Sobic005G211400--Sobic007G098400 Sobic005G211400--Sobic002G242500 Sobic003G294400 Sobic003G294400 Sobic005G211400--Sobic003G294400 Sobic004G232400 Sobic004G232400 Sobic005G211400--Sobic004G232400 Sobic004G145200 Sobic004G145200 Sobic005G211400--Sobic004G145200 Sobic006G076201 Sobic006G076201 Sobic005G211400--Sobic006G076201 Sobic001G090000 Sobic001G090000 Sobic005G211400--Sobic001G090000 Sobic001G403700 Sobic001G403700 Sobic005G211400--Sobic001G403700 Sobic002G242500--Sobic002G294200 Sobic002G242500--Sobic007G098400 Sobic002G242500--Sobic004G145200 Sobic003G049300 Sobic003G049300 Sobic002G242500--Sobic003G049300 Sobic002G242500--Sobic001G049200 Sobic003G167500 Sobic003G167500 Sobic002G242500--Sobic003G167500 Sobic002G242500--Sobic007G221100 Sobic002G242500--Sobic001G403700 Sobic002G242500--Sobic005G211400
Octagon: transcription factors


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