Gene annotation
| Transcriptome id | Sobic.003G106300.1 |
|---|---|
| Synonym | Sb03g008930, HYD1 |
| Functional annotation | 3-beta-hydroxysteroid-Delta-isomerase, putative, expressed |
| UniProt | C5XF27 |
| Pfam | PF05241 |
| Panther DB | PTHR14207 PTHR14207:SF0 |
| NCBI CDD | KOG4826; C-8,7 sterol isomerase |
| KEGG Orthology | K01824; cholestenol Delta-isomerase |
| Gene Ontology | GO:0016125; sterol metabolic process GO:0016021integral component of membrane |
Orthologs (automatic annotation)
| TAIR | AT1G20050 : C-8,7 sterol isomerase |
|---|---|
| RAP-DB (Rice) | LOC_Os01g01369.1 : 3-beta-hydroxysteroid-Delta-isomerase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a035390 , Zm00025a023847 |
| Brachypodium | KQK02761 |
| Barley | HORVU3Hr1G014290.1 , HORVU3Hr1G014290.3 , HORVU3Hr1G014290.2 , HORVU3Hr1G014290.5 , HORVU3Hr1G014290.4 , HORVU3Hr1G014290.6 |
| Wheat | TraesCS3B02G094700 , TraesCS3A02G079400 , TraesCS3D02G079800 |
| Populus | - |
JBrowse
| Sobic.003G106300 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.007G120000 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ABC transporter, ATP-binding protein, putative, expressed | - |
| 2 | Sobic.001G218500 | MATH domain containing protein, expressed | - |
| 3 | Sobic.007G214500 | sucrose transporters(PubMedID : 23805151)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Sugar transporter(PubMedID : 27330561)@sucrose transporter BoSUT1, putative, expressed | K15378: solute carrier family 45, member 1/2/4 |
| 4 | Sobic.003G020500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GDSL-like lipase/acylhydrolase, putative, expressed | - |
| 5 | Sobic.007G021200 | carrier, putative, expressed | - |
| 6 | Sobic.007G193200 | MTA/SAH nucleosidase, putative, expressed | K01244: 5'-methylthioadenosine nucleosidase |
| 7 | Sobic.005G075600 | rp3 protein, putative, expressed | - |
| 8 | Sobic.003G079100 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@muconate cycloisomerase, putative, expressed | - |
| 9 | Sobic.009G084300 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@phosphorylase domain containing protein, putative, expressed | - |
| 10 | Sobic.010G001300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Protein transferase (At)(PubMedID : 27208977)@transferase family protein, putative, expressed | - |
| 11 | Sobic.004G161900 | AMP-binding enzyme, putative, expressed | K01895: ACSS1_2, acetyl-CoA synthetase |
| 12 | Sobic.005G182800 | NB-ARC domain containing protein, expressed | - |
| 13 | Sobic.007G119800 | ABC transporter, ATP-binding protein, putative, expressed | - |
| 14 | Sobic.005G079100 | dirigent, putative | - |
| 15 | Sobic.004G014600 | disease resistance protein RGA2, putative, expressed | - |
| 16 | Sobic.008G138900 | MLA12, putative, expressed | - |
| 17 | Sobic.005G046400 | - | - |
| 18 | Sobic.003G441601 | - | - |
| 19 | Sobic.002G195600 | Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@dehydrogenase, putative, expressed | K00083: cinnamyl-alcohol dehydrogenase |
| 20 | Sobic.002G391300 | peroxidase precursor, putative, expressed | K00430: peroxidase |
Gene co-expression network
Octagon: transcription factors
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