Gene annotation
Transcriptome id Sobic.007G119800.1
Synonym ABCA2, Sb07g019510, ATH1, ATATH1
Functional annotation ABC transporter, ATP-binding protein, putative, expressed
UniProt C5YKN4 , H0I4A9
Pfam PF12698 PF00005
Panther DB PTHR19229
NCBI CDD KOG0059; Lipid exporter ABCA1 and related proteins, ABC superfamily
KEGG Orthology -
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0016021integral component of membrane GO:0006810transport GO:0005215transporter activity


Orthologs (automatic annotation)
TAIR AT3G47730 : ATP-binding cassette A2
RAP-DB (Rice) LOC_Os08g30740.1 : ABC transporter, ATP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a006028
Brachypodium PNT68062 , KQJ98197 , KQJ98196
Barley HORVU1Hr1G075640.11 , HORVU1Hr1G075640.10 , HORVU1Hr1G075640.13 , HORVU1Hr1G075640.12 , HORVU1Hr1G075640.15 , HORVU1Hr1G075640.14 , HORVU1Hr1G075640.17 , HORVU1Hr1G075640.16 , HORVU1Hr1G075640.9 , HORVU1Hr1G075640.8 , HORVU1Hr1G075640.5 , HORVU1Hr1G075640.4 , HORVU1Hr1G075640.7 , HORVU1Hr1G075640.6 , HORVU1Hr1G075640.1 , HORVU1Hr1G075640.3 , HORVU1Hr1G075640.2
Wheat TraesCS1D02G345100 , TraesCS1D02G345100 , TraesCS1A02G342900 , TraesCS1A02G342900 , TraesCS1A02G342900 , TraesCS1B02G356100 , TraesCS1B02G356100 , TraesCS1B02G356100
Populus -


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cDNA sequences
Sobic.007G119800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G017601 - -
2 Sobic.001G218500 MATH domain containing protein, expressed -
3 Sobic.004G161900 AMP-binding enzyme, putative, expressed K01895: ACSS1_2, acetyl-CoA synthetase
4 Sobic.007G120000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ABC transporter, ATP-binding protein, putative, expressed -
5 Sobic.005G075600 rp3 protein, putative, expressed -
6 Sobic.003G020500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GDSL-like lipase/acylhydrolase, putative, expressed -
7 Sobic.007G193200 MTA/SAH nucleosidase, putative, expressed K01244: 5'-methylthioadenosine nucleosidase
8 Sobic.010G045400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@AMP-binding enzyme, putative, expressed K01897: ACSL, long-chain acyl-CoA synthetase
9 Sobic.001G454900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux protein, putative, expressed -
10 Sobic.010G001300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Protein transferase (At)(PubMedID : 27208977)@transferase family protein, putative, expressed -
11 Sobic.001G460400 expressed protein -
12 Sobic.003G079100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@muconate cycloisomerase, putative, expressed -
13 Sobic.005G134600 natural resistance-associated macrophage protein, putative, expressed K12347: SLC11A1, natural resistance-associated macrophage protein 1
14 Sobic.006G230300 similar to LOC Os04g54190: cysteine-rich receptor-like protein kinase 8 precursor(PubMedID : 24655390)@similar to LOC.Os04g54190:cysteine-rich receptor-like protein kinase 8 precursor(PubMedID : 24655390)@cysteine-rich receptor-like protein kinase 8 precursor, putative, expressed K04733: interleukin-1 receptor-associated kinase 4
15 Sobic.009G084400 transporter family protein, putative, expressed -
16 Sobic.003G287400 respiratory burst oxidase, putative, expressed K13447: respiratory burst oxidase
17 Sobic.002G029600 CBS domain containing membrane protein, putative, expressed K00088: IMPDH, IMP dehydrogenase
18 Sobic.004G339800 phosphate transporter 1, putative, expressed -
19 Sobic.008G037900 transcription factor, putative, expressed K14431: transcription factor TGA
20 Sobic.002G274600 glycosyl transferase family 8 protein, expressed -


Gene co-expression network
sample Sobic007G119800 Sobic007G119800 Sobic003G017601 Sobic003G017601 Sobic007G119800--Sobic003G017601 Sobic001G218500 Sobic001G218500 Sobic007G119800--Sobic001G218500 Sobic004G161900 Sobic004G161900 Sobic007G119800--Sobic004G161900 Sobic007G120000 Sobic007G120000 Sobic007G119800--Sobic007G120000 Sobic005G075600 Sobic005G075600 Sobic007G119800--Sobic005G075600 Sobic003G020500 Sobic003G020500 Sobic007G119800--Sobic003G020500 Sobic007G193200 Sobic007G193200 Sobic007G119800--Sobic007G193200 Sobic010G045400 Sobic010G045400 Sobic007G119800--Sobic010G045400 Sobic001G454900 Sobic001G454900 Sobic007G119800--Sobic001G454900 Sobic003G017601--Sobic001G218500 Sobic001G342000 Sobic001G342000 Sobic003G017601--Sobic001G342000 Sobic002G183750 Sobic002G183750 Sobic003G017601--Sobic002G183750 Sobic002G111900 Sobic002G111900 Sobic003G017601--Sobic002G111900 Sobic003G079100 Sobic003G079100 Sobic003G017601--Sobic003G079100 Sobic010G213600 Sobic010G213600 Sobic003G017601--Sobic010G213600 Sobic003G017601--Sobic003G020500 Sobic005G223700 Sobic005G223700 Sobic003G017601--Sobic005G223700 Sobic005G175900 Sobic005G175900 Sobic003G017601--Sobic005G175900 Sobic001G218500--Sobic003G020500 Sobic004G014600 Sobic004G014600 Sobic001G218500--Sobic004G014600 Sobic001G218500--Sobic003G079100 Sobic001G218500--Sobic001G342000 Sobic001G218500--Sobic002G111900 Sobic009G165100 Sobic009G165100 Sobic001G218500--Sobic009G165100 Sobic002G029600 Sobic002G029600 Sobic001G218500--Sobic002G029600 Sobic001G218500--Sobic003G017601 Sobic003G441601 Sobic003G441601 Sobic001G218500--Sobic003G441601 Sobic003G368000 Sobic003G368000 Sobic004G161900--Sobic003G368000 Sobic004G161900--Sobic003G017601 Sobic004G161900--Sobic010G045400 Sobic008G037900 Sobic008G037900 Sobic004G161900--Sobic008G037900 Sobic001G460400 Sobic001G460400 Sobic004G161900--Sobic001G460400 Sobic004G161900--Sobic001G218500 Sobic004G161900--Sobic003G079100 Sobic002G383900 Sobic002G383900 Sobic004G161900--Sobic002G383900 Sobic004G161900--Sobic003G020500 Sobic007G120000--Sobic001G218500 Sobic007G120000--Sobic003G020500 Sobic001G326400 Sobic001G326400 Sobic007G120000--Sobic001G326400 Sobic009G084300 Sobic009G084300 Sobic007G120000--Sobic009G084300 Sobic007G120000--Sobic005G075600 Sobic003G106300 Sobic003G106300 Sobic007G120000--Sobic003G106300 Sobic007G120000--Sobic003G017601 Sobic001G067800 Sobic001G067800 Sobic007G120000--Sobic001G067800 Sobic005G134600 Sobic005G134600 Sobic007G120000--Sobic005G134600 Sobic005G075600--Sobic007G120000 Sobic010G126900 Sobic010G126900 Sobic005G075600--Sobic010G126900 Sobic005G075600--Sobic007G119800 Sobic004G103400 Sobic004G103400 Sobic005G075600--Sobic004G103400 Sobic004G153100 Sobic004G153100 Sobic005G075600--Sobic004G153100 Sobic005G075600--Sobic001G218500 Sobic005G075600--Sobic003G020500 Sobic005G075600--Sobic003G106300 Sobic005G075600--Sobic005G134600 Sobic003G020500--Sobic001G218500 Sobic003G020500--Sobic002G111900 Sobic003G020500--Sobic003G079100 Sobic002G391300 Sobic002G391300 Sobic003G020500--Sobic002G391300 Sobic003G020500--Sobic003G441601 Sobic003G020500--Sobic004G014600 Sobic002G289500 Sobic002G289500 Sobic003G020500--Sobic002G289500 Sobic006G171100 Sobic006G171100 Sobic003G020500--Sobic006G171100 Sobic002G029500 Sobic002G029500 Sobic003G020500--Sobic002G029500 Sobic004G261500 Sobic004G261500 Sobic007G193200--Sobic004G261500 Sobic004G079900 Sobic004G079900 Sobic007G193200--Sobic004G079900 Sobic001G181600 Sobic001G181600 Sobic007G193200--Sobic001G181600 Sobic003G154500 Sobic003G154500 Sobic007G193200--Sobic003G154500 Sobic001G218400 Sobic001G218400 Sobic007G193200--Sobic001G218400 Sobic005G033000 Sobic005G033000 Sobic007G193200--Sobic005G033000 Sobic007G193200--Sobic001G454900 Sobic005G119900 Sobic005G119900 Sobic007G193200--Sobic005G119900 Sobic003G441800 Sobic003G441800 Sobic007G193200--Sobic003G441800 Sobic010G045400--Sobic008G037900 Sobic010G045400--Sobic003G017601 Sobic010G045400--Sobic003G368000 Sobic010G045400--Sobic004G161900 Sobic006G230300 Sobic006G230300 Sobic010G045400--Sobic006G230300 Sobic001G299100 Sobic001G299100 Sobic010G045400--Sobic001G299100 Sobic008G191400 Sobic008G191400 Sobic010G045400--Sobic008G191400 Sobic010G045400--Sobic001G218500 Sobic010G045400--Sobic010G213600 Sobic006G097900 Sobic006G097900 Sobic001G454900--Sobic006G097900 Sobic010G268700 Sobic010G268700 Sobic001G454900--Sobic010G268700 Sobic010G152500 Sobic010G152500 Sobic001G454900--Sobic010G152500 Sobic007G111800 Sobic007G111800 Sobic001G454900--Sobic007G111800 Sobic006G085700 Sobic006G085700 Sobic001G454900--Sobic006G085700 Sobic004G009200 Sobic004G009200 Sobic001G454900--Sobic004G009200 Sobic001G454900--Sobic007G193200 Sobic003G382200 Sobic003G382200 Sobic001G454900--Sobic003G382200 Sobic002G391900 Sobic002G391900 Sobic001G454900--Sobic002G391900
Octagon: transcription factors


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