Gene annotation
Transcriptome id Sobic.005G134600.11,Sobic.005G134600.5,Sobic.005G134600.7,Sobic.005G134600.8,Sobic.005G134600.6,Sobic.005G134600.9,Sobic.005G134600.1,Sobic.005G134600.4,Sobic.005G134600.3,Sobic.005G134600.12,Sobic.005G134600.10
Synonym PMIT1, ATNRAMP1, NRAMP1, Sb05g019830
Functional annotation natural resistance-associated macrophage protein, putative, expressed
UniProt A0A1Z5RIJ9 , A0A1Z5RJE5 , A0A1Z5RIG7 , A0A1Z5RIK2 , A0A1Z5RIZ5 , A0A1Z5RJN6 , A0A1Z5RII4 , A0A1Z5RIS7 , A0A1B6PSB3 , A0A1B6PS90 , A0A1Z5RJ46
Pfam PF01566
Panther DB PTHR11706 PTHR11706:SF47
NCBI CDD KOG1291; Mn2+ and Fe2+ transporters of the NRAMP family
KEGG Orthology K12347; SLC11A1, natural resistance-associated macrophage protein 1
Gene Ontology GO:0016020; membrane GO:0006810transport GO:0005215transporter activity


Orthologs (automatic annotation)
TAIR AT1G15960 : NRAMP metal ion transporter 6,NRAMP metal ion transporter 2
RAP-DB (Rice) LOC_Os01g31870.1 : natural resistance-associated macrophage protein, putative, expressed
MaizeGDB (Corn) Zm00025a015692
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G017601 - -
2 Sobic.001G067800 metal cation transporter, putative, expressed K07238: TC.ZIP, zupT, ZRT3, zinc transporter, ZIP family
3 Sobic.004G161900 AMP-binding enzyme, putative, expressed K01895: ACSS1_2, acetyl-CoA synthetase
4 Sobic.001G218500 MATH domain containing protein, expressed -
5 Sobic.003G287450 - -
6 Sobic.007G120000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ABC transporter, ATP-binding protein, putative, expressed -
7 Sobic.004G106300 down-regulated TF in developmental senescence(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
8 Sobic.003G287400 respiratory burst oxidase, putative, expressed K13447: respiratory burst oxidase
9 Sobic.006G230300 similar to LOC Os04g54190: cysteine-rich receptor-like protein kinase 8 precursor(PubMedID : 24655390)@similar to LOC.Os04g54190:cysteine-rich receptor-like protein kinase 8 precursor(PubMedID : 24655390)@cysteine-rich receptor-like protein kinase 8 precursor, putative, expressed K04733: interleukin-1 receptor-associated kinase 4
10 Sobic.005G219600 protein kinase domain containing protein, expressed -
11 Sobic.003G020500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GDSL-like lipase/acylhydrolase, putative, expressed -
12 Sobic.002G114800 CDPK - calcium-dependent protein kinase 18(PubMedID : 31721651)@CAMK_CAMK_like.32 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
13 Sobic.001G460400 expressed protein -
14 Sobic.007G119800 ABC transporter, ATP-binding protein, putative, expressed -
15 Sobic.002G238300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CSLE6 - cellulose synthase-like family E, expressed -
16 Sobic.004G312200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@WRKY32, expressed -
17 Sobic.010G045400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@AMP-binding enzyme, putative, expressed K01897: ACSL, long-chain acyl-CoA synthetase
18 Sobic.005G075600 rp3 protein, putative, expressed -
19 Sobic.003G079100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@muconate cycloisomerase, putative, expressed -
20 Sobic.005G022500 alpha-N-arabinofuranosidase A, putative, expressed K01209: alpha-L-arabinofuranosidase


Gene co-expression network
sample Sobic005G134600 Sobic005G134600 Sobic003G017601 Sobic003G017601 Sobic005G134600--Sobic003G017601 Sobic001G067800 Sobic001G067800 Sobic005G134600--Sobic001G067800 Sobic004G161900 Sobic004G161900 Sobic005G134600--Sobic004G161900 Sobic001G218500 Sobic001G218500 Sobic005G134600--Sobic001G218500 Sobic003G287450 Sobic003G287450 Sobic005G134600--Sobic003G287450 Sobic007G120000 Sobic007G120000 Sobic005G134600--Sobic007G120000 Sobic004G106300 Sobic004G106300 Sobic005G134600--Sobic004G106300 Sobic003G287400 Sobic003G287400 Sobic005G134600--Sobic003G287400 Sobic006G230300 Sobic006G230300 Sobic005G134600--Sobic006G230300 Sobic003G017601--Sobic001G218500 Sobic001G342000 Sobic001G342000 Sobic003G017601--Sobic001G342000 Sobic002G183750 Sobic002G183750 Sobic003G017601--Sobic002G183750 Sobic002G111900 Sobic002G111900 Sobic003G017601--Sobic002G111900 Sobic003G079100 Sobic003G079100 Sobic003G017601--Sobic003G079100 Sobic010G213600 Sobic010G213600 Sobic003G017601--Sobic010G213600 Sobic003G020500 Sobic003G020500 Sobic003G017601--Sobic003G020500 Sobic005G223700 Sobic005G223700 Sobic003G017601--Sobic005G223700 Sobic005G175900 Sobic005G175900 Sobic003G017601--Sobic005G175900 Sobic005G219600 Sobic005G219600 Sobic001G067800--Sobic005G219600 Sobic001G067800--Sobic001G218500 Sobic003G255600 Sobic003G255600 Sobic001G067800--Sobic003G255600 Sobic001G239200 Sobic001G239200 Sobic001G067800--Sobic001G239200 Sobic004G193500 Sobic004G193500 Sobic001G067800--Sobic004G193500 Sobic009G079900 Sobic009G079900 Sobic001G067800--Sobic009G079900 Sobic001G067800--Sobic003G079100 Sobic002G029600 Sobic002G029600 Sobic001G067800--Sobic002G029600 Sobic001G067800--Sobic003G020500 Sobic003G368000 Sobic003G368000 Sobic004G161900--Sobic003G368000 Sobic004G161900--Sobic003G017601 Sobic010G045400 Sobic010G045400 Sobic004G161900--Sobic010G045400 Sobic008G037900 Sobic008G037900 Sobic004G161900--Sobic008G037900 Sobic001G460400 Sobic001G460400 Sobic004G161900--Sobic001G460400 Sobic004G161900--Sobic001G218500 Sobic004G161900--Sobic003G079100 Sobic002G383900 Sobic002G383900 Sobic004G161900--Sobic002G383900 Sobic004G161900--Sobic003G020500 Sobic001G218500--Sobic003G020500 Sobic004G014600 Sobic004G014600 Sobic001G218500--Sobic004G014600 Sobic001G218500--Sobic003G079100 Sobic001G218500--Sobic001G342000 Sobic001G218500--Sobic002G111900 Sobic009G165100 Sobic009G165100 Sobic001G218500--Sobic009G165100 Sobic001G218500--Sobic002G029600 Sobic001G218500--Sobic003G017601 Sobic003G441601 Sobic003G441601 Sobic001G218500--Sobic003G441601 Sobic002G259100 Sobic002G259100 Sobic003G287450--Sobic002G259100 Sobic001G503000 Sobic001G503000 Sobic003G287450--Sobic001G503000 Sobic005G115300 Sobic005G115300 Sobic003G287450--Sobic005G115300 Sobic004G312200 Sobic004G312200 Sobic003G287450--Sobic004G312200 Sobic006G009700 Sobic006G009700 Sobic003G287450--Sobic006G009700 Sobic005G071900 Sobic005G071900 Sobic003G287450--Sobic005G071900 Sobic003G287450--Sobic001G218500 Sobic004G312500 Sobic004G312500 Sobic003G287450--Sobic004G312500 Sobic003G287450--Sobic003G287400 Sobic007G120000--Sobic001G218500 Sobic007G120000--Sobic003G020500 Sobic001G326400 Sobic001G326400 Sobic007G120000--Sobic001G326400 Sobic009G084300 Sobic009G084300 Sobic007G120000--Sobic009G084300 Sobic005G075600 Sobic005G075600 Sobic007G120000--Sobic005G075600 Sobic003G106300 Sobic003G106300 Sobic007G120000--Sobic003G106300 Sobic007G120000--Sobic003G017601 Sobic007G120000--Sobic001G067800 Sobic007G120000--Sobic005G134600 Sobic004G106300--Sobic004G312200 Sobic010G082000 Sobic010G082000 Sobic004G106300--Sobic010G082000 Sobic003G203600 Sobic003G203600 Sobic004G106300--Sobic003G203600 Sobic003G240400 Sobic003G240400 Sobic004G106300--Sobic003G240400 Sobic003G128800 Sobic003G128800 Sobic004G106300--Sobic003G128800 Sobic006G196400 Sobic006G196400 Sobic004G106300--Sobic006G196400 Sobic002G195600 Sobic002G195600 Sobic004G106300--Sobic002G195600 Sobic006G092700 Sobic006G092700 Sobic004G106300--Sobic006G092700 Sobic003G426500 Sobic003G426500 Sobic004G106300--Sobic003G426500 Sobic003G287400--Sobic003G287450 Sobic003G287400--Sobic004G161900 Sobic003G287400--Sobic005G134600 Sobic003G287400--Sobic004G312200 Sobic006G075600 Sobic006G075600 Sobic003G287400--Sobic006G075600 Sobic003G287400--Sobic001G503000 Sobic004G323900 Sobic004G323900 Sobic003G287400--Sobic004G323900 Sobic003G287400--Sobic001G218500 Sobic007G119800 Sobic007G119800 Sobic003G287400--Sobic007G119800 Sobic001G299100 Sobic001G299100 Sobic006G230300--Sobic001G299100 Sobic003G417100 Sobic003G417100 Sobic006G230300--Sobic003G417100 Sobic006G230300--Sobic006G092700 Sobic008G191400 Sobic008G191400 Sobic006G230300--Sobic008G191400 Sobic003G215200 Sobic003G215200 Sobic006G230300--Sobic003G215200 Sobic010G028100 Sobic010G028100 Sobic006G230300--Sobic010G028100 Sobic003G000100 Sobic003G000100 Sobic006G230300--Sobic003G000100 Sobic010G194100 Sobic010G194100 Sobic006G230300--Sobic010G194100 Sobic006G230300--Sobic003G017601
Octagon: transcription factors


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