Gene annotation
Transcriptome id Sobic.007G120000.2,Sobic.007G120000.1
Synonym ATH6, ATATH6, Sb07g019540
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
ABC transporter, ATP-binding protein, putative, expressed
UniProt A0A1B6PHJ8 , A0A1Z5R9G7
Pfam PF12698 PF00005
Panther DB PTHR19229 PTHR19229:SF131
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0016021integral component of membrane GO:0006810transport GO:0005215transporter activity


Orthologs (automatic annotation)
TAIR AT3G47780 : ABC2 homolog 6
RAP-DB (Rice) LOC_Os08g30770.1 : ABC transporter, ATP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a046657 , Zm00025a030987
Brachypodium PNT68061 , PNT64441 , PNT64442 , KQJ98195 , KQJ89944
Barley HORVU1Hr1G075620.24 , HORVU5Hr1G056930.41 , HORVU5Hr1G056930.40 , HORVU5Hr1G056930.43 , HORVU5Hr1G056930.42 , HORVU5Hr1G056930.45 , HORVU5Hr1G056930.44 , HORVU1Hr1G075620.22 , HORVU1Hr1G075620.23 , HORVU1Hr1G075620.20 , HORVU1Hr1G075620.21 , HORVU5Hr1G056930.3 , HORVU5Hr1G056930.4 , HORVU5Hr1G056930.5 , HORVU5Hr1G056930.9 , HORVU5Hr1G056930.23 , HORVU5Hr1G056930.22 , HORVU5Hr1G056930.27 , HORVU5Hr1G056930.26 , HORVU5Hr1G056930.25 , HORVU5Hr1G056930.24 , HORVU5Hr1G056930.28 , HORVU5Hr1G056930.32 , HORVU5Hr1G056930.33 , HORVU5Hr1G056930.34 , HORVU5Hr1G056930.35 , HORVU5Hr1G056930.36 , HORVU5Hr1G056930.37 , HORVU4Hr1G087670.1 , HORVU4Hr1G087670.2 , HORVU4Hr1G087670.3 , HORVU4Hr1G087670.4 , HORVU4Hr1G087670.5 , HORVU4Hr1G087670.6 , HORVU4Hr1G087670.7 , HORVU4Hr1G087670.8 , HORVU4Hr1G087670.9 , HORVU1Hr1G075620.9 , HORVU1Hr1G075620.8 , HORVU1Hr1G075620.3 , HORVU1Hr1G075620.2 , HORVU1Hr1G075620.1 , HORVU1Hr1G075620.7 , HORVU1Hr1G075620.6 , HORVU1Hr1G075620.5 , HORVU1Hr1G075620.4 , HORVU5Hr1G056930.18 , HORVU5Hr1G056930.19 , HORVU5Hr1G056930.12 , HORVU5Hr1G056930.13 , HORVU5Hr1G056930.10 , HORVU5Hr1G056930.15 , HORVU1Hr1G075620.18 , HORVU1Hr1G075620.13 , HORVU1Hr1G075620.12 , HORVU1Hr1G075620.11 , HORVU1Hr1G075620.10 , HORVU1Hr1G075620.17 , HORVU1Hr1G075620.16 , HORVU1Hr1G075620.15 , HORVU1Hr1G075620.14
Wheat TraesCS5A02G534100 , TraesCS5A02G534100 , TraesCS5A02G534100 , TraesCS1A02G343000 , TraesCS1A02G343000 , TraesCS3D02G368700 , TraesCS3D02G368700 , TraesCS1B02G356200 , TraesCS5D02G195700 , TraesCS4B02G365000 , TraesCS1D02G345200 , TraesCS3D02G368700 , TraesCS4B02G365000 , TraesCS5A02G193200 , TraesCS5B02G188600 , TraesCS5B02G188600 , TraesCS5B02G188600 , TraesCSU02G138200 , TraesCSU02G138200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G218500 MATH domain containing protein, expressed -
2 Sobic.003G020500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GDSL-like lipase/acylhydrolase, putative, expressed -
3 Sobic.001G326400 cytochrome P450, putative, expressed -
4 Sobic.009G084300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@phosphorylase domain containing protein, putative, expressed -
5 Sobic.005G075600 rp3 protein, putative, expressed -
6 Sobic.003G106300 3-beta-hydroxysteroid-Delta-isomerase, putative, expressed K01824: cholestenol Delta-isomerase
7 Sobic.003G017601 - -
8 Sobic.001G067800 metal cation transporter, putative, expressed K07238: TC.ZIP, zupT, ZRT3, zinc transporter, ZIP family
9 Sobic.005G134600 natural resistance-associated macrophage protein, putative, expressed K12347: SLC11A1, natural resistance-associated macrophage protein 1
10 Sobic.005G219600 protein kinase domain containing protein, expressed -
11 Sobic.003G079100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@muconate cycloisomerase, putative, expressed -
12 Sobic.007G119800 ABC transporter, ATP-binding protein, putative, expressed -
13 Sobic.005G226400 RGH1A, putative, expressed -
14 Sobic.007G214500 sucrose transporters(PubMedID : 23805151)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Sugar transporter(PubMedID : 27330561)@sucrose transporter BoSUT1, putative, expressed K15378: solute carrier family 45, member 1/2/4
15 Sobic.002G166150 - -
16 Sobic.005G226350 - -
17 Sobic.002G117900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@glycosyl hydrolase, family 31, putative, expressed K01187: alpha-glucosidase
18 Sobic.005G134200 "domain confirmed by Pfam database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsGH3.13 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
19 Sobic.005G065700 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
20 Sobic.008G033700 pleiotropic drug resistance protein 15, putative, expressed -


Gene co-expression network
sample Sobic007G120000 Sobic007G120000 Sobic001G218500 Sobic001G218500 Sobic007G120000--Sobic001G218500 Sobic003G020500 Sobic003G020500 Sobic007G120000--Sobic003G020500 Sobic001G326400 Sobic001G326400 Sobic007G120000--Sobic001G326400 Sobic009G084300 Sobic009G084300 Sobic007G120000--Sobic009G084300 Sobic005G075600 Sobic005G075600 Sobic007G120000--Sobic005G075600 Sobic003G106300 Sobic003G106300 Sobic007G120000--Sobic003G106300 Sobic003G017601 Sobic003G017601 Sobic007G120000--Sobic003G017601 Sobic001G067800 Sobic001G067800 Sobic007G120000--Sobic001G067800 Sobic005G134600 Sobic005G134600 Sobic007G120000--Sobic005G134600 Sobic001G218500--Sobic003G020500 Sobic004G014600 Sobic004G014600 Sobic001G218500--Sobic004G014600 Sobic003G079100 Sobic003G079100 Sobic001G218500--Sobic003G079100 Sobic001G342000 Sobic001G342000 Sobic001G218500--Sobic001G342000 Sobic002G111900 Sobic002G111900 Sobic001G218500--Sobic002G111900 Sobic009G165100 Sobic009G165100 Sobic001G218500--Sobic009G165100 Sobic002G029600 Sobic002G029600 Sobic001G218500--Sobic002G029600 Sobic001G218500--Sobic003G017601 Sobic003G441601 Sobic003G441601 Sobic001G218500--Sobic003G441601 Sobic003G020500--Sobic001G218500 Sobic003G020500--Sobic002G111900 Sobic003G020500--Sobic003G079100 Sobic002G391300 Sobic002G391300 Sobic003G020500--Sobic002G391300 Sobic003G020500--Sobic003G441601 Sobic003G020500--Sobic004G014600 Sobic002G289500 Sobic002G289500 Sobic003G020500--Sobic002G289500 Sobic006G171100 Sobic006G171100 Sobic003G020500--Sobic006G171100 Sobic002G029500 Sobic002G029500 Sobic003G020500--Sobic002G029500 Sobic001G326400--Sobic003G020500 Sobic001G326400--Sobic001G218500 Sobic005G219600 Sobic005G219600 Sobic001G326400--Sobic005G219600 Sobic001G506700 Sobic001G506700 Sobic001G326400--Sobic001G506700 Sobic002G019100 Sobic002G019100 Sobic001G326400--Sobic002G019100 Sobic001G326400--Sobic007G120000 Sobic002G166150 Sobic002G166150 Sobic001G326400--Sobic002G166150 Sobic001G326400--Sobic003G079100 Sobic004G308500 Sobic004G308500 Sobic001G326400--Sobic004G308500 Sobic009G084300--Sobic007G120000 Sobic009G084300--Sobic001G218500 Sobic010G001300 Sobic010G001300 Sobic009G084300--Sobic010G001300 Sobic001G302500 Sobic001G302500 Sobic009G084300--Sobic001G302500 Sobic009G084300--Sobic003G020500 Sobic006G230300 Sobic006G230300 Sobic009G084300--Sobic006G230300 Sobic010G128700 Sobic010G128700 Sobic009G084300--Sobic010G128700 Sobic001G216500 Sobic001G216500 Sobic009G084300--Sobic001G216500 Sobic001G299100 Sobic001G299100 Sobic009G084300--Sobic001G299100 Sobic005G075600--Sobic007G120000 Sobic010G126900 Sobic010G126900 Sobic005G075600--Sobic010G126900 Sobic007G119800 Sobic007G119800 Sobic005G075600--Sobic007G119800 Sobic004G103400 Sobic004G103400 Sobic005G075600--Sobic004G103400 Sobic004G153100 Sobic004G153100 Sobic005G075600--Sobic004G153100 Sobic005G075600--Sobic001G218500 Sobic005G075600--Sobic003G020500 Sobic005G075600--Sobic003G106300 Sobic005G075600--Sobic005G134600 Sobic003G106300--Sobic007G120000 Sobic003G106300--Sobic001G218500 Sobic007G214500 Sobic007G214500 Sobic003G106300--Sobic007G214500 Sobic003G106300--Sobic003G020500 Sobic007G021200 Sobic007G021200 Sobic003G106300--Sobic007G021200 Sobic007G193200 Sobic007G193200 Sobic003G106300--Sobic007G193200 Sobic003G106300--Sobic005G075600 Sobic003G106300--Sobic003G079100 Sobic003G106300--Sobic009G084300 Sobic003G017601--Sobic001G218500 Sobic003G017601--Sobic001G342000 Sobic002G183750 Sobic002G183750 Sobic003G017601--Sobic002G183750 Sobic003G017601--Sobic002G111900 Sobic003G017601--Sobic003G079100 Sobic010G213600 Sobic010G213600 Sobic003G017601--Sobic010G213600 Sobic003G017601--Sobic003G020500 Sobic005G223700 Sobic005G223700 Sobic003G017601--Sobic005G223700 Sobic005G175900 Sobic005G175900 Sobic003G017601--Sobic005G175900 Sobic001G067800--Sobic005G219600 Sobic001G067800--Sobic001G218500 Sobic003G255600 Sobic003G255600 Sobic001G067800--Sobic003G255600 Sobic001G239200 Sobic001G239200 Sobic001G067800--Sobic001G239200 Sobic004G193500 Sobic004G193500 Sobic001G067800--Sobic004G193500 Sobic009G079900 Sobic009G079900 Sobic001G067800--Sobic009G079900 Sobic001G067800--Sobic003G079100 Sobic001G067800--Sobic002G029600 Sobic001G067800--Sobic003G020500 Sobic005G134600--Sobic003G017601 Sobic005G134600--Sobic001G067800 Sobic004G161900 Sobic004G161900 Sobic005G134600--Sobic004G161900 Sobic005G134600--Sobic001G218500 Sobic003G287450 Sobic003G287450 Sobic005G134600--Sobic003G287450 Sobic005G134600--Sobic007G120000 Sobic004G106300 Sobic004G106300 Sobic005G134600--Sobic004G106300 Sobic003G287400 Sobic003G287400 Sobic005G134600--Sobic003G287400 Sobic005G134600--Sobic006G230300
Octagon: transcription factors


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