Gene annotation
Transcriptome id Sobic.010G045400.10,Sobic.010G045400.18,Sobic.010G045400.16,Sobic.010G045400.19,Sobic.010G045400.6,Sobic.010G045400.3,Sobic.010G045400.2,Sobic.010G045400.4,Sobic.010G045400.1,Sobic.010G045400.14,Sobic.010G045400.20,Sobic.010G045400.8,Sobic.010G045400.9,Sobic.010G045400.13,Sobic.010G045400.11,Sobic.010G045400.17,Sobic.010G045400.21,Sobic.010G045400.15,Sobic.010G045400.12
Synonym Sb10g003970, LACS4
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
AMP-binding enzyme, putative, expressed
UniProt A0A194YH93 , A0A194YH97 , A0A194YH92 , A0A194YIB9 , C5Z4E9
Pfam PF00501
Panther DB PTHR24096 PTHR24096:SF237
NCBI CDD -
KEGG Orthology K01897; ACSL, long-chain acyl-CoA synthetase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT4G23850 : AMP-dependent synthetase and ligase family protein
RAP-DB (Rice) LOC_Os06g06350.1 : AMP-binding enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a049978
Brachypodium KQK19520 , KQK19519 , KQK19518
Barley HORVU5Hr1G046950.31 , HORVU5Hr1G046950.30 , HORVU5Hr1G046950.33 , HORVU5Hr1G046950.32 , HORVU5Hr1G046950.35 , HORVU5Hr1G046950.34 , HORVU5Hr1G046950.9 , HORVU5Hr1G046950.8 , HORVU5Hr1G046950.7 , HORVU5Hr1G046950.6 , HORVU5Hr1G046950.5 , HORVU5Hr1G046950.4 , HORVU5Hr1G046950.3 , HORVU5Hr1G046950.2 , HORVU5Hr1G046950.1 , HORVU7Hr1G024350.25 , HORVU7Hr1G024350.26 , HORVU7Hr1G024350.27 , HORVU7Hr1G024350.24 , HORVU7Hr1G024350.22 , HORVU7Hr1G024350.23 , HORVU7Hr1G024350.20 , HORVU7Hr1G024350.21 , HORVU7Hr1G024350.28 , HORVU7Hr1G024350.29 , HORVU7Hr1G024350.7 , HORVU7Hr1G024350.6 , HORVU7Hr1G024350.5 , HORVU7Hr1G024350.4 , HORVU7Hr1G024350.3 , HORVU7Hr1G024350.2 , HORVU7Hr1G024350.1 , HORVU7Hr1G024350.9 , HORVU7Hr1G024350.8 , HORVU7Hr1G024350.15 , HORVU7Hr1G024350.14 , HORVU7Hr1G024350.13 , HORVU7Hr1G024350.12 , HORVU7Hr1G024350.11 , HORVU7Hr1G024350.10 , HORVU5Hr1G046950.28 , HORVU5Hr1G046950.29 , HORVU5Hr1G046950.26 , HORVU5Hr1G046950.27 , HORVU5Hr1G046950.24 , HORVU5Hr1G046950.25 , HORVU5Hr1G046950.22 , HORVU5Hr1G046950.23 , HORVU5Hr1G046950.20 , HORVU5Hr1G046950.21 , HORVU5Hr1G046950.17 , HORVU5Hr1G046950.16 , HORVU5Hr1G046950.15 , HORVU5Hr1G046950.14 , HORVU5Hr1G046950.13 , HORVU5Hr1G046950.12 , HORVU5Hr1G046950.11 , HORVU5Hr1G046950.10 , HORVU5Hr1G046950.19 , HORVU5Hr1G046950.18 , HORVU7Hr1G024350.19 , HORVU7Hr1G024350.18 , HORVU7Hr1G024350.17 , HORVU7Hr1G024350.16 , HORVU7Hr1G024350.31 , HORVU7Hr1G024350.30 , HORVU7Hr1G024350.33 , HORVU7Hr1G024350.32 , HORVU7Hr1G024350.35
Wheat TraesCS7B02G012700 , TraesCS5A02G148700 , TraesCS5B02G147300 , TraesCS7A02G115900 , TraesCS5D02G144200 , TraesCS5D02G144200 , TraesCS7D02G110700
Populus -


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cDNA sequences
Sobic.010G045400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G037900 transcription factor, putative, expressed K14431: transcription factor TGA
2 Sobic.003G017601 - -
3 Sobic.003G368000 OsFBT3 - F-box and tubby domain containing protein, expressed -
4 Sobic.004G161900 AMP-binding enzyme, putative, expressed K01895: ACSS1_2, acetyl-CoA synthetase
5 Sobic.006G230300 similar to LOC Os04g54190: cysteine-rich receptor-like protein kinase 8 precursor(PubMedID : 24655390)@similar to LOC.Os04g54190:cysteine-rich receptor-like protein kinase 8 precursor(PubMedID : 24655390)@cysteine-rich receptor-like protein kinase 8 precursor, putative, expressed K04733: interleukin-1 receptor-associated kinase 4
6 Sobic.001G299100 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
7 Sobic.008G191400 expressed protein -
8 Sobic.001G218500 MATH domain containing protein, expressed -
9 Sobic.010G213600 histidine kinase, putative, expressed -
10 Sobic.002G111900 receptor-like kinase, putative, expressed -
11 Sobic.009G102300 hydrolase, acting on glycosyl bonds, putative, expressed K01227: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
12 Sobic.001G342000 expressed protein -
13 Sobic.004G014600 disease resistance protein RGA2, putative, expressed -
14 Sobic.007G140000 wall-associated receptor kinase-like 22 precursor, putative, expressed -
15 Sobic.009G065700 - -
16 Sobic.006G085700 OsPDIL1-2 protein disulfide isomerase PDIL1-2, expressed K09580: PDIA1, protein disulfide-isomerase A1
17 Sobic.004G079900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@copper-transporting ATPase, putative, expressed K17686: copA, ctpA, P-type Cu+ transporter
18 Sobic.003G079100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@muconate cycloisomerase, putative, expressed -
19 Sobic.006G092700 MLO domain containing protein, putative, expressed K08472: mlo protein
20 Sobic.007G220400 receptor-like protein kinase 2 precursor, putative, expressed -


Gene co-expression network
sample Sobic010G045400 Sobic010G045400 Sobic008G037900 Sobic008G037900 Sobic010G045400--Sobic008G037900 Sobic003G017601 Sobic003G017601 Sobic010G045400--Sobic003G017601 Sobic003G368000 Sobic003G368000 Sobic010G045400--Sobic003G368000 Sobic004G161900 Sobic004G161900 Sobic010G045400--Sobic004G161900 Sobic006G230300 Sobic006G230300 Sobic010G045400--Sobic006G230300 Sobic001G299100 Sobic001G299100 Sobic010G045400--Sobic001G299100 Sobic008G191400 Sobic008G191400 Sobic010G045400--Sobic008G191400 Sobic001G218500 Sobic001G218500 Sobic010G045400--Sobic001G218500 Sobic010G213600 Sobic010G213600 Sobic010G045400--Sobic010G213600 Sobic010G097200 Sobic010G097200 Sobic008G037900--Sobic010G097200 Sobic007G220400 Sobic007G220400 Sobic008G037900--Sobic007G220400 Sobic006G205700 Sobic006G205700 Sobic008G037900--Sobic006G205700 Sobic002G111900 Sobic002G111900 Sobic008G037900--Sobic002G111900 Sobic010G241900 Sobic010G241900 Sobic008G037900--Sobic010G241900 Sobic009G065700 Sobic009G065700 Sobic008G037900--Sobic009G065700 Sobic003G441800 Sobic003G441800 Sobic008G037900--Sobic003G441800 Sobic003G167300 Sobic003G167300 Sobic008G037900--Sobic003G167300 Sobic002G391400 Sobic002G391400 Sobic008G037900--Sobic002G391400 Sobic003G017601--Sobic001G218500 Sobic001G342000 Sobic001G342000 Sobic003G017601--Sobic001G342000 Sobic002G183750 Sobic002G183750 Sobic003G017601--Sobic002G183750 Sobic003G017601--Sobic002G111900 Sobic003G079100 Sobic003G079100 Sobic003G017601--Sobic003G079100 Sobic003G017601--Sobic010G213600 Sobic003G020500 Sobic003G020500 Sobic003G017601--Sobic003G020500 Sobic005G223700 Sobic005G223700 Sobic003G017601--Sobic005G223700 Sobic005G175900 Sobic005G175900 Sobic003G017601--Sobic005G175900 Sobic003G368000--Sobic004G161900 Sobic003G368000--Sobic008G037900 Sobic003G099000 Sobic003G099000 Sobic003G368000--Sobic003G099000 Sobic003G368000--Sobic010G045400 Sobic003G368000--Sobic003G017601 Sobic003G368000--Sobic010G097200 Sobic010G191700 Sobic010G191700 Sobic003G368000--Sobic010G191700 Sobic003G368000--Sobic003G079100 Sobic003G368000--Sobic002G391400 Sobic004G161900--Sobic003G368000 Sobic004G161900--Sobic003G017601 Sobic004G161900--Sobic010G045400 Sobic004G161900--Sobic008G037900 Sobic001G460400 Sobic001G460400 Sobic004G161900--Sobic001G460400 Sobic004G161900--Sobic001G218500 Sobic004G161900--Sobic003G079100 Sobic002G383900 Sobic002G383900 Sobic004G161900--Sobic002G383900 Sobic004G161900--Sobic003G020500 Sobic006G230300--Sobic001G299100 Sobic003G417100 Sobic003G417100 Sobic006G230300--Sobic003G417100 Sobic006G092700 Sobic006G092700 Sobic006G230300--Sobic006G092700 Sobic006G230300--Sobic008G191400 Sobic003G215200 Sobic003G215200 Sobic006G230300--Sobic003G215200 Sobic010G028100 Sobic010G028100 Sobic006G230300--Sobic010G028100 Sobic003G000100 Sobic003G000100 Sobic006G230300--Sobic003G000100 Sobic010G194100 Sobic010G194100 Sobic006G230300--Sobic010G194100 Sobic006G230300--Sobic003G017601 Sobic004G106100 Sobic004G106100 Sobic001G299100--Sobic004G106100 Sobic001G299100--Sobic006G092700 Sobic003G319400 Sobic003G319400 Sobic001G299100--Sobic003G319400 Sobic010G152400 Sobic010G152400 Sobic001G299100--Sobic010G152400 Sobic010G082000 Sobic010G082000 Sobic001G299100--Sobic010G082000 Sobic001G299100--Sobic003G000100 Sobic001G299100--Sobic008G191400 Sobic004G306900 Sobic004G306900 Sobic001G299100--Sobic004G306900 Sobic007G086300 Sobic007G086300 Sobic001G299100--Sobic007G086300 Sobic008G191400--Sobic001G299100 Sobic008G191400--Sobic006G092700 Sobic008G191400--Sobic003G319400 Sobic006G135300 Sobic006G135300 Sobic008G191400--Sobic006G135300 Sobic007G100700 Sobic007G100700 Sobic008G191400--Sobic007G100700 Sobic003G426500 Sobic003G426500 Sobic008G191400--Sobic003G426500 Sobic008G191400--Sobic004G306900 Sobic009G181600 Sobic009G181600 Sobic008G191400--Sobic009G181600 Sobic008G191400--Sobic010G082000 Sobic001G218500--Sobic003G020500 Sobic004G014600 Sobic004G014600 Sobic001G218500--Sobic004G014600 Sobic001G218500--Sobic003G079100 Sobic001G218500--Sobic001G342000 Sobic001G218500--Sobic002G111900 Sobic009G165100 Sobic009G165100 Sobic001G218500--Sobic009G165100 Sobic002G029600 Sobic002G029600 Sobic001G218500--Sobic002G029600 Sobic001G218500--Sobic003G017601 Sobic003G441601 Sobic003G441601 Sobic001G218500--Sobic003G441601 Sobic008G033100 Sobic008G033100 Sobic010G213600--Sobic008G033100 Sobic005G065700 Sobic005G065700 Sobic010G213600--Sobic005G065700 Sobic002G019000 Sobic002G019000 Sobic010G213600--Sobic002G019000 Sobic010G213600--Sobic004G014600 Sobic005G182900 Sobic005G182900 Sobic010G213600--Sobic005G182900 Sobic010G213600--Sobic009G165100 Sobic010G213600--Sobic003G079100 Sobic003G161400 Sobic003G161400 Sobic010G213600--Sobic003G161400 Sobic010G213600--Sobic001G342000
Octagon: transcription factors


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