Gene annotation
Transcriptome id Sobic.003G368000.1
Synonym Sb03g040940, TLP10, AtTLP10
Functional annotation OsFBT3 - F-box and tubby domain containing protein, expressed
UniProt C5XQM9
Pfam PF00646 PF01167
Panther DB PTHR16517 PTHR16517:SF39
NCBI CDD KOG2502; Tub family proteins
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G25280 : tubby like protein 10
RAP-DB (Rice) LOC_Os01g64700.2 : OsFBT3 - F-box and tubby domain containing protein, expressed
MaizeGDB (Corn) Zm00025a034171 , Zm00025a026715 , Zm00025a021720 , Zm00025a043841
Brachypodium KQK10767 , KQK10768 , KQK10769 , PNT64127 , KQK00939 , KQJ85450 , KQJ89302 , KQJ89301
Barley HORVU6Hr1G068970.2 , HORVU6Hr1G068970.3 , HORVU1Hr1G074940.11 , HORVU1Hr1G074940.10 , HORVU6Hr1G068970.5 , HORVU6Hr1G068970.6 , HORVU6Hr1G068970.1 , HORVU6Hr1G068970.7 , HORVU6Hr1G068970.4 , HORVU1Hr1G074940.1 , HORVU1Hr1G074940.3 , HORVU1Hr1G074940.2 , HORVU1Hr1G074940.7 , HORVU1Hr1G074940.9 , HORVU3Hr1G083290.5 , HORVU3Hr1G083290.4 , HORVU3Hr1G083290.7 , HORVU3Hr1G083290.6 , HORVU3Hr1G083290.1 , HORVU3Hr1G083290.3 , HORVU3Hr1G083290.2 , HORVU4Hr1G020110.4 , HORVU4Hr1G020110.2 , HORVU4Hr1G020110.3 , HORVU4Hr1G020110.1 , HORVU2Hr1G124880.1 , HORVU2Hr1G124880.3 , HORVU2Hr1G124880.2 , HORVU2Hr1G124880.5 , HORVU2Hr1G124880.4 , HORVU2Hr1G124880.7 , HORVU2Hr1G124880.6 , HORVU2Hr1G124880.9 , HORVU2Hr1G124880.8 , HORVU2Hr1G124880.11 , HORVU2Hr1G124880.10 , HORVU2Hr1G124880.13 , HORVU2Hr1G124880.12
Wheat TraesCS7B02G227000 , TraesCS2D02G584900 , TraesCS2B02G613800 , TraesCS4B02G112600 , TraesCS1A02G273100 , TraesCS1B02G282900 , TraesCS6D02G252800 , TraesCS6D02G252800 , TraesCS3A02G378300 , TraesCS3D02G371600 , TraesCS6B02G300200 , TraesCS6A02G272800 , TraesCS6A02G272800 , TraesCS7D02G323100 , TraesCS3B02G411000 , TraesCS4D02G110100 , TraesCS1D02G273200 , TraesCS2A02G574000 , TraesCS7A02G326400 , TraesCS4A02G209000
Populus -


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cDNA sequences
Sobic.003G368000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G161900 AMP-binding enzyme, putative, expressed K01895: ACSS1_2, acetyl-CoA synthetase
2 Sobic.008G037900 transcription factor, putative, expressed K14431: transcription factor TGA
3 Sobic.003G099000 helix-loop-helix DNA-binding domain containing protein, expressed -
4 Sobic.010G045400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@AMP-binding enzyme, putative, expressed K01897: ACSL, long-chain acyl-CoA synthetase
5 Sobic.003G017601 - -
6 Sobic.010G097200 expressed protein -
7 Sobic.010G191700 cytochrome P450, putative, expressed -
8 Sobic.003G079100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@muconate cycloisomerase, putative, expressed -
9 Sobic.002G391400 peroxidase precursor, putative, expressed K00430: peroxidase
10 Sobic.007G220400 receptor-like protein kinase 2 precursor, putative, expressed -
11 Sobic.002G111900 receptor-like kinase, putative, expressed -
12 Sobic.007G206800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lectin-like protein kinase, putative, expressed -
13 Sobic.005G033000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A
14 Sobic.010G241900 Leucine-rich receptor-like protein kinase family protein(PubMedID : 28640841)@serine/threonine-protein kinase BRI1-like 2 precursor, putative, expressed -
15 Sobic.006G205700 glycosyl hydrolases family 16, putative, expressed -
16 Sobic.006G196400 U-box, putative, expressed -
17 Sobic.007G090600 CSLC3 - cellulose synthase-like family C, expressed -
18 Sobic.003G441601 - -
19 Sobic.005G226350 - -
20 Sobic.005G175900 expressed protein -


Gene co-expression network
sample Sobic003G368000 Sobic003G368000 Sobic004G161900 Sobic004G161900 Sobic003G368000--Sobic004G161900 Sobic008G037900 Sobic008G037900 Sobic003G368000--Sobic008G037900 Sobic003G099000 Sobic003G099000 Sobic003G368000--Sobic003G099000 Sobic010G045400 Sobic010G045400 Sobic003G368000--Sobic010G045400 Sobic003G017601 Sobic003G017601 Sobic003G368000--Sobic003G017601 Sobic010G097200 Sobic010G097200 Sobic003G368000--Sobic010G097200 Sobic010G191700 Sobic010G191700 Sobic003G368000--Sobic010G191700 Sobic003G079100 Sobic003G079100 Sobic003G368000--Sobic003G079100 Sobic002G391400 Sobic002G391400 Sobic003G368000--Sobic002G391400 Sobic004G161900--Sobic003G368000 Sobic004G161900--Sobic003G017601 Sobic004G161900--Sobic010G045400 Sobic004G161900--Sobic008G037900 Sobic001G460400 Sobic001G460400 Sobic004G161900--Sobic001G460400 Sobic001G218500 Sobic001G218500 Sobic004G161900--Sobic001G218500 Sobic004G161900--Sobic003G079100 Sobic002G383900 Sobic002G383900 Sobic004G161900--Sobic002G383900 Sobic003G020500 Sobic003G020500 Sobic004G161900--Sobic003G020500 Sobic008G037900--Sobic010G097200 Sobic007G220400 Sobic007G220400 Sobic008G037900--Sobic007G220400 Sobic006G205700 Sobic006G205700 Sobic008G037900--Sobic006G205700 Sobic002G111900 Sobic002G111900 Sobic008G037900--Sobic002G111900 Sobic010G241900 Sobic010G241900 Sobic008G037900--Sobic010G241900 Sobic009G065700 Sobic009G065700 Sobic008G037900--Sobic009G065700 Sobic003G441800 Sobic003G441800 Sobic008G037900--Sobic003G441800 Sobic003G167300 Sobic003G167300 Sobic008G037900--Sobic003G167300 Sobic008G037900--Sobic002G391400 Sobic003G099000--Sobic003G368000 Sobic003G099000--Sobic008G037900 Sobic002G392100 Sobic002G392100 Sobic003G099000--Sobic002G392100 Sobic005G097400 Sobic005G097400 Sobic003G099000--Sobic005G097400 Sobic003G099000--Sobic002G391400 Sobic003G099000--Sobic006G205700 Sobic003G099000--Sobic004G161900 Sobic007G206800 Sobic007G206800 Sobic003G099000--Sobic007G206800 Sobic003G099000--Sobic003G167300 Sobic010G045400--Sobic008G037900 Sobic010G045400--Sobic003G017601 Sobic010G045400--Sobic003G368000 Sobic010G045400--Sobic004G161900 Sobic006G230300 Sobic006G230300 Sobic010G045400--Sobic006G230300 Sobic001G299100 Sobic001G299100 Sobic010G045400--Sobic001G299100 Sobic008G191400 Sobic008G191400 Sobic010G045400--Sobic008G191400 Sobic010G045400--Sobic001G218500 Sobic010G213600 Sobic010G213600 Sobic010G045400--Sobic010G213600 Sobic003G017601--Sobic001G218500 Sobic001G342000 Sobic001G342000 Sobic003G017601--Sobic001G342000 Sobic002G183750 Sobic002G183750 Sobic003G017601--Sobic002G183750 Sobic003G017601--Sobic002G111900 Sobic003G017601--Sobic003G079100 Sobic003G017601--Sobic010G213600 Sobic003G017601--Sobic003G020500 Sobic005G223700 Sobic005G223700 Sobic003G017601--Sobic005G223700 Sobic005G175900 Sobic005G175900 Sobic003G017601--Sobic005G175900 Sobic010G097200--Sobic003G167300 Sobic010G097200--Sobic006G205700 Sobic010G097200--Sobic008G037900 Sobic007G037600 Sobic007G037600 Sobic010G097200--Sobic007G037600 Sobic005G033000 Sobic005G033000 Sobic010G097200--Sobic005G033000 Sobic010G097200--Sobic009G065700 Sobic010G097200--Sobic003G441800 Sobic004G119800 Sobic004G119800 Sobic010G097200--Sobic004G119800 Sobic004G014600 Sobic004G014600 Sobic010G097200--Sobic004G014600 Sobic010G191700--Sobic010G241900 Sobic010G191700--Sobic002G111900 Sobic010G191700--Sobic007G220400 Sobic002G391300 Sobic002G391300 Sobic010G191700--Sobic002G391300 Sobic010G128300 Sobic010G128300 Sobic010G191700--Sobic010G128300 Sobic010G191700--Sobic002G391400 Sobic003G441601 Sobic003G441601 Sobic010G191700--Sobic003G441601 Sobic010G191700--Sobic007G206800 Sobic005G134200 Sobic005G134200 Sobic010G191700--Sobic005G134200 Sobic002G029600 Sobic002G029600 Sobic003G079100--Sobic002G029600 Sobic003G079100--Sobic004G014600 Sobic005G065700 Sobic005G065700 Sobic003G079100--Sobic005G065700 Sobic002G029500 Sobic002G029500 Sobic003G079100--Sobic002G029500 Sobic005G182800 Sobic005G182800 Sobic003G079100--Sobic005G182800 Sobic003G079100--Sobic010G213600 Sobic005G182900 Sobic005G182900 Sobic003G079100--Sobic005G182900 Sobic010G152500 Sobic010G152500 Sobic003G079100--Sobic010G152500 Sobic005G071900 Sobic005G071900 Sobic003G079100--Sobic005G071900 Sobic002G391400--Sobic007G206800 Sobic002G391400--Sobic010G241900 Sobic002G391400--Sobic006G205700 Sobic002G391400--Sobic010G191700 Sobic002G391400--Sobic007G220400 Sobic002G334000 Sobic002G334000 Sobic002G391400--Sobic002G334000 Sobic002G391400--Sobic002G392100 Sobic002G391400--Sobic002G111900 Sobic010G191600 Sobic010G191600 Sobic002G391400--Sobic010G191600
Octagon: transcription factors


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