Gene annotation
Transcriptome id Sobic.003G099000.1
Synonym Sb03g008290, ATRSL1, RSL1
Functional annotation helix-loop-helix DNA-binding domain containing protein, expressed
UniProt C5XEV7
Pfam PF00010
Panther DB PTHR16223 PTHR16223:SF19
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G37800 : RHD SIX-LIKE 1
RAP-DB (Rice) LOC_Os01g02110.1 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a035445
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G368000 OsFBT3 - F-box and tubby domain containing protein, expressed -
2 Sobic.008G037900 transcription factor, putative, expressed K14431: transcription factor TGA
3 Sobic.002G392100 peroxidase precursor, putative, expressed K00430: peroxidase
4 Sobic.005G097400 cell death associated protein, putative, expressed -
5 Sobic.002G391400 peroxidase precursor, putative, expressed K00430: peroxidase
6 Sobic.006G205700 glycosyl hydrolases family 16, putative, expressed -
7 Sobic.004G161900 AMP-binding enzyme, putative, expressed K01895: ACSS1_2, acetyl-CoA synthetase
8 Sobic.007G206800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lectin-like protein kinase, putative, expressed -
9 Sobic.003G167300 peroxidase precursor, putative, expressed K00430: peroxidase
10 Sobic.007G086300 glycosyl hydrolases family 16, putative, expressed -
11 Sobic.004G106100 peroxidase precursor, putative, expressed K00430: peroxidase
12 Sobic.004G066700 ZOS2-04 - C2H2 zinc finger protein, expressed -
13 Sobic.002G118801 - -
14 Sobic.008G022100 nucleoside-triphosphatase, putative, expressed K14641: apyrase
15 Sobic.010G241900 Leucine-rich receptor-like protein kinase family protein(PubMedID : 28640841)@serine/threonine-protein kinase BRI1-like 2 precursor, putative, expressed -
16 Sobic.002G334000 CSLF3 - cellulose synthase-like family F@ beta1,3@1,4 glucan synthase, expressed -
17 Sobic.003G257400 "BG3(Ortholog in rice:Xiao et al., 20018)"(PubMedID : 31659870)@purine permease, putative, expressed -
18 Sobic.001G499900 expansin precursor, putative, expressed -
19 Sobic.010G191600 cytochrome P450, putative, expressed -
20 Sobic.005G033000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A


Gene co-expression network
sample Sobic003G099000 Sobic003G099000 Sobic003G368000 Sobic003G368000 Sobic003G099000--Sobic003G368000 Sobic008G037900 Sobic008G037900 Sobic003G099000--Sobic008G037900 Sobic002G392100 Sobic002G392100 Sobic003G099000--Sobic002G392100 Sobic005G097400 Sobic005G097400 Sobic003G099000--Sobic005G097400 Sobic002G391400 Sobic002G391400 Sobic003G099000--Sobic002G391400 Sobic006G205700 Sobic006G205700 Sobic003G099000--Sobic006G205700 Sobic004G161900 Sobic004G161900 Sobic003G099000--Sobic004G161900 Sobic007G206800 Sobic007G206800 Sobic003G099000--Sobic007G206800 Sobic003G167300 Sobic003G167300 Sobic003G099000--Sobic003G167300 Sobic003G368000--Sobic004G161900 Sobic003G368000--Sobic008G037900 Sobic003G368000--Sobic003G099000 Sobic010G045400 Sobic010G045400 Sobic003G368000--Sobic010G045400 Sobic003G017601 Sobic003G017601 Sobic003G368000--Sobic003G017601 Sobic010G097200 Sobic010G097200 Sobic003G368000--Sobic010G097200 Sobic010G191700 Sobic010G191700 Sobic003G368000--Sobic010G191700 Sobic003G079100 Sobic003G079100 Sobic003G368000--Sobic003G079100 Sobic003G368000--Sobic002G391400 Sobic008G037900--Sobic010G097200 Sobic007G220400 Sobic007G220400 Sobic008G037900--Sobic007G220400 Sobic008G037900--Sobic006G205700 Sobic002G111900 Sobic002G111900 Sobic008G037900--Sobic002G111900 Sobic010G241900 Sobic010G241900 Sobic008G037900--Sobic010G241900 Sobic009G065700 Sobic009G065700 Sobic008G037900--Sobic009G065700 Sobic003G441800 Sobic003G441800 Sobic008G037900--Sobic003G441800 Sobic008G037900--Sobic003G167300 Sobic008G037900--Sobic002G391400 Sobic002G392100--Sobic002G391400 Sobic002G392100--Sobic007G206800 Sobic002G334000 Sobic002G334000 Sobic002G392100--Sobic002G334000 Sobic007G086300 Sobic007G086300 Sobic002G392100--Sobic007G086300 Sobic002G392100--Sobic006G205700 Sobic008G034900 Sobic008G034900 Sobic002G392100--Sobic008G034900 Sobic002G392100--Sobic003G167300 Sobic002G392100--Sobic010G241900 Sobic001G499900 Sobic001G499900 Sobic002G392100--Sobic001G499900 Sobic010G191600 Sobic010G191600 Sobic005G097400--Sobic010G191600 Sobic002G118801 Sobic002G118801 Sobic005G097400--Sobic002G118801 Sobic005G097400--Sobic006G205700 Sobic001G539200 Sobic001G539200 Sobic005G097400--Sobic001G539200 Sobic004G106100 Sobic004G106100 Sobic005G097400--Sobic004G106100 Sobic001G414800 Sobic001G414800 Sobic005G097400--Sobic001G414800 Sobic005G097400--Sobic002G391400 Sobic005G097400--Sobic003G167300 Sobic005G097400--Sobic007G086300 Sobic002G391400--Sobic007G206800 Sobic002G391400--Sobic010G241900 Sobic002G391400--Sobic006G205700 Sobic002G391400--Sobic010G191700 Sobic002G391400--Sobic007G220400 Sobic002G391400--Sobic002G334000 Sobic002G391400--Sobic002G392100 Sobic002G391400--Sobic002G111900 Sobic002G391400--Sobic010G191600 Sobic006G205700--Sobic002G391400 Sobic006G205700--Sobic003G441800 Sobic006G205700--Sobic004G106100 Sobic006G205700--Sobic003G167300 Sobic006G205700--Sobic010G241900 Sobic005G046400 Sobic005G046400 Sobic006G205700--Sobic005G046400 Sobic006G205700--Sobic007G206800 Sobic003G441601 Sobic003G441601 Sobic006G205700--Sobic003G441601 Sobic003G095100 Sobic003G095100 Sobic006G205700--Sobic003G095100 Sobic004G161900--Sobic003G368000 Sobic004G161900--Sobic003G017601 Sobic004G161900--Sobic010G045400 Sobic004G161900--Sobic008G037900 Sobic001G460400 Sobic001G460400 Sobic004G161900--Sobic001G460400 Sobic001G218500 Sobic001G218500 Sobic004G161900--Sobic001G218500 Sobic004G161900--Sobic003G079100 Sobic002G383900 Sobic002G383900 Sobic004G161900--Sobic002G383900 Sobic003G020500 Sobic003G020500 Sobic004G161900--Sobic003G020500 Sobic007G206800--Sobic002G391400 Sobic007G206800--Sobic002G334000 Sobic007G206800--Sobic007G220400 Sobic007G206800--Sobic010G241900 Sobic007G206800--Sobic010G191700 Sobic007G206800--Sobic006G205700 Sobic005G080600 Sobic005G080600 Sobic007G206800--Sobic005G080600 Sobic007G206800--Sobic002G111900 Sobic007G206800--Sobic002G392100 Sobic003G167300--Sobic001G499900 Sobic003G167300--Sobic006G205700 Sobic008G022100 Sobic008G022100 Sobic003G167300--Sobic008G022100 Sobic003G167300--Sobic009G065700 Sobic003G167300--Sobic003G441800 Sobic003G167300--Sobic002G391400 Sobic003G167300--Sobic010G241900 Sobic001G348400 Sobic001G348400 Sobic003G167300--Sobic001G348400 Sobic003G167300--Sobic003G095100
Octagon: transcription factors


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