Gene annotation
Transcriptome id Sobic.005G033000.1,Sobic.005G033000.2
Synonym RPI2, Sb05g002760
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
ribose-5-phosphate isomerase A, putative, expressed
UniProt C5Y4J8
Pfam PF06026
Panther DB PTHR11934 PTHR11934:SF7
NCBI CDD KOG3075; Ribose 5-phosphate isomerase
KEGG Orthology K01807; ribose 5-phosphate isomerase A
Gene Ontology GO:0009052; pentose-phosphate shunt, non-oxidative branch GO:0004751ribose-5-phosphate isomerase activity


Orthologs (automatic annotation)
TAIR AT2G01290 : ribose-5-phosphate isomerase 2
RAP-DB (Rice) LOC_Os04g24140.1 : ribose-5-phosphate isomerase A, putative, expressed
MaizeGDB (Corn) Zm00025a004238 , Zm00025a033449 , Zm00025a013042 , Zm00025a055893
Brachypodium KQJ82023
Barley HORVU2Hr1G066480.1 , HORVU2Hr1G066480.2 , HORVU2Hr1G066480.3 , HORVU2Hr1G066480.4 , HORVU2Hr1G066480.5 , HORVU2Hr1G066480.6
Wheat TraesCS6D02G061600 , TraesCS6D02G061600 , TraesCS6A02G063200 , TraesCS6B02G084400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G097200 expressed protein -
2 Sobic.003G154500 helix-loop-helix DNA-binding domain containing protein, expressed -
3 Sobic.004G261500 phosphoribosyl transferase, putative, expressed -
4 Sobic.009G065700 - -
5 Sobic.001G218400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MATH domain containing protein, expressed -
6 Sobic.001G414800 dirigent, putative, expressed -
7 Sobic.002G096000 copper methylamine oxidase precursor, putative, expressed K00276: AOC3, AOC2, primary-amine oxidase
8 Sobic.004G079900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@copper-transporting ATPase, putative, expressed K17686: copA, ctpA, P-type Cu+ transporter
9 Sobic.001G499900 expansin precursor, putative, expressed -
10 Sobic.010G191600 cytochrome P450, putative, expressed -
11 Sobic.001G443100 Oxidoreductase superfamily protein("PubMedID : 26759170,PubMedID : 24597475")@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
12 Sobic.001G181600 dehydrogenase/reductase, putative, expressed -
13 Sobic.007G193200 MTA/SAH nucleosidase, putative, expressed K01244: 5'-methylthioadenosine nucleosidase
14 Sobic.003G167300 peroxidase precursor, putative, expressed K00430: peroxidase
15 Sobic.005G035900 PAN domain-containing protein At5g03700 precursor, putative, expressed -
16 Sobic.006G059800 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
17 Sobic.006G047200 helix-loop-helix DNA-binding domain containing protein, expressed -
18 Sobic.005G097400 cell death associated protein, putative, expressed -
19 Sobic.006G106900 "cell wall modification, deposition of casparian strips, endodermis, transmembrane"(PubMedID : 24920445)@membrane associated DUF588 domain containing protein, putative, expressed -
20 Sobic.002G111900 receptor-like kinase, putative, expressed -


Gene co-expression network
sample Sobic005G033000 Sobic005G033000 Sobic010G097200 Sobic010G097200 Sobic005G033000--Sobic010G097200 Sobic003G154500 Sobic003G154500 Sobic005G033000--Sobic003G154500 Sobic004G261500 Sobic004G261500 Sobic005G033000--Sobic004G261500 Sobic009G065700 Sobic009G065700 Sobic005G033000--Sobic009G065700 Sobic001G218400 Sobic001G218400 Sobic005G033000--Sobic001G218400 Sobic001G414800 Sobic001G414800 Sobic005G033000--Sobic001G414800 Sobic002G096000 Sobic002G096000 Sobic005G033000--Sobic002G096000 Sobic004G079900 Sobic004G079900 Sobic005G033000--Sobic004G079900 Sobic001G499900 Sobic001G499900 Sobic005G033000--Sobic001G499900 Sobic003G167300 Sobic003G167300 Sobic010G097200--Sobic003G167300 Sobic006G205700 Sobic006G205700 Sobic010G097200--Sobic006G205700 Sobic008G037900 Sobic008G037900 Sobic010G097200--Sobic008G037900 Sobic007G037600 Sobic007G037600 Sobic010G097200--Sobic007G037600 Sobic010G097200--Sobic005G033000 Sobic010G097200--Sobic009G065700 Sobic003G441800 Sobic003G441800 Sobic010G097200--Sobic003G441800 Sobic004G119800 Sobic004G119800 Sobic010G097200--Sobic004G119800 Sobic004G014600 Sobic004G014600 Sobic010G097200--Sobic004G014600 Sobic001G181600 Sobic001G181600 Sobic003G154500--Sobic001G181600 Sobic005G119900 Sobic005G119900 Sobic003G154500--Sobic005G119900 Sobic001G395900 Sobic001G395900 Sobic003G154500--Sobic001G395900 Sobic006G230200 Sobic006G230200 Sobic003G154500--Sobic006G230200 Sobic007G202480 Sobic007G202480 Sobic003G154500--Sobic007G202480 Sobic009G055300 Sobic009G055300 Sobic003G154500--Sobic009G055300 Sobic006G230100 Sobic006G230100 Sobic003G154500--Sobic006G230100 Sobic003G154500--Sobic001G218400 Sobic003G154500--Sobic004G261500 Sobic004G261500--Sobic001G395900 Sobic005G101000 Sobic005G101000 Sobic004G261500--Sobic005G101000 Sobic004G261500--Sobic006G230100 Sobic004G299500 Sobic004G299500 Sobic004G261500--Sobic004G299500 Sobic008G058600 Sobic008G058600 Sobic004G261500--Sobic008G058600 Sobic004G261500--Sobic007G202480 Sobic004G261500--Sobic006G230200 Sobic001G153100 Sobic001G153100 Sobic004G261500--Sobic001G153100 Sobic004G261500--Sobic003G154500 Sobic009G065700--Sobic003G167300 Sobic009G065700--Sobic003G441800 Sobic002G111900 Sobic002G111900 Sobic009G065700--Sobic002G111900 Sobic010G010000 Sobic010G010000 Sobic009G065700--Sobic010G010000 Sobic002G289500 Sobic002G289500 Sobic009G065700--Sobic002G289500 Sobic009G065700--Sobic001G499900 Sobic003G441601 Sobic003G441601 Sobic009G065700--Sobic003G441601 Sobic010G241900 Sobic010G241900 Sobic009G065700--Sobic010G241900 Sobic001G348400 Sobic001G348400 Sobic009G065700--Sobic001G348400 Sobic006G097900 Sobic006G097900 Sobic001G218400--Sobic006G097900 Sobic004G121600 Sobic004G121600 Sobic001G218400--Sobic004G121600 Sobic001G218400--Sobic001G181600 Sobic001G218400--Sobic003G441800 Sobic010G191600 Sobic010G191600 Sobic001G218400--Sobic010G191600 Sobic001G218400--Sobic003G154500 Sobic003G441700 Sobic003G441700 Sobic001G218400--Sobic003G441700 Sobic001G218400--Sobic010G010000 Sobic001G218400--Sobic005G119900 Sobic006G106900 Sobic006G106900 Sobic001G414800--Sobic006G106900 Sobic001G507100 Sobic001G507100 Sobic001G414800--Sobic001G507100 Sobic001G414800--Sobic010G191600 Sobic007G206800 Sobic007G206800 Sobic001G414800--Sobic007G206800 Sobic003G064800 Sobic003G064800 Sobic001G414800--Sobic003G064800 Sobic005G217766 Sobic005G217766 Sobic001G414800--Sobic005G217766 Sobic005G097400 Sobic005G097400 Sobic001G414800--Sobic005G097400 Sobic007G086300 Sobic007G086300 Sobic001G414800--Sobic007G086300 Sobic008G022100 Sobic008G022100 Sobic001G414800--Sobic008G022100 Sobic002G096000--Sobic009G065700 Sobic002G096000--Sobic004G079900 Sobic002G096000--Sobic001G218400 Sobic005G035900 Sobic005G035900 Sobic002G096000--Sobic005G035900 Sobic002G096000--Sobic005G101000 Sobic002G096000--Sobic003G154500 Sobic006G047200 Sobic006G047200 Sobic002G096000--Sobic006G047200 Sobic002G096000--Sobic010G010000 Sobic006G059800 Sobic006G059800 Sobic002G096000--Sobic006G059800 Sobic004G079900--Sobic001G153100 Sobic004G079900--Sobic004G261500 Sobic004G079900--Sobic008G058600 Sobic004G079900--Sobic006G047200 Sobic004G079900--Sobic009G065700 Sobic004G079900--Sobic005G101000 Sobic006G171100 Sobic006G171100 Sobic004G079900--Sobic006G171100 Sobic004G079900--Sobic001G181600 Sobic004G079900--Sobic010G010000 Sobic001G499900--Sobic003G167300 Sobic002G392000 Sobic002G392000 Sobic001G499900--Sobic002G392000 Sobic001G499900--Sobic010G241900 Sobic007G220400 Sobic007G220400 Sobic001G499900--Sobic007G220400 Sobic001G499900--Sobic008G022100 Sobic001G499900--Sobic007G206800 Sobic010G191700 Sobic010G191700 Sobic001G499900--Sobic010G191700 Sobic001G499900--Sobic009G065700 Sobic001G499900--Sobic006G047200
Octagon: transcription factors


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