Gene annotation
| Transcriptome id | Sobic.004G106300.1 |
|---|---|
| Synonym | Sb04g008670 |
| Functional annotation | down-regulated TF in developmental senescence (PubMedID : 27586543) MYB family transcription factor, putative, expressed |
| UniProt | C5XYZ4 |
| Pfam | PF00249 |
| Panther DB | PTHR31314 PTHR31314:SF20 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT2G38300 : myb-like HTH transcriptional regulator family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os02g14490.1 : MYB family transcription factor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a042350 , Zm00025a019997 , Zm00025a050967 |
| Brachypodium | KQK18157 , KQJ94199 |
| Barley | HORVU6Hr1G019650.6 , HORVU6Hr1G019650.5 , HORVU6Hr1G019650.4 , HORVU6Hr1G019650.2 , HORVU7Hr1G080530.1 , HORVU7Hr1G080530.3 , HORVU7Hr1G080530.2 , HORVU7Hr1G080530.5 , HORVU7Hr1G080530.4 , HORVU7Hr1G080530.6 , HORVU7Hr1G080530.9 , HORVU7Hr1G080530.8 , HORVU6Hr1G019650.10 , HORVU7Hr1G080530.15 , HORVU7Hr1G080530.14 , HORVU7Hr1G080530.11 , HORVU7Hr1G080530.10 , HORVU7Hr1G080530.13 , HORVU6Hr1G019650.7 , HORVU6Hr1G019650.3 , HORVU6Hr1G019650.1 , HORVU6Hr1G019650.9 , HORVU6Hr1G019650.8 |
| Wheat | TraesCS7D02G334100 , TraesCS6A02G109700 , TraesCS6B02G138200 , TraesCS6B02G138200 , TraesCS7B02G238000 , TraesCS6D02G098200 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G312200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@WRKY32, expressed | - |
| 2 | Sobic.010G082000 | xyloglucan fucosyltransferase, putative, expressed | K13681: xyloglucan fucosyltransferase |
| 3 | Sobic.003G203600 | aldehyde dehydrogenase, putative, expressed | K12355: coniferyl-aldehyde dehydrogenase |
| 4 | Sobic.003G240400 | leaf senescence related protein, putative, expressed | - |
| 5 | Sobic.003G128800 | expansin precursor, putative, expressed | - |
| 6 | Sobic.006G196400 | U-box, putative, expressed | - |
| 7 | Sobic.002G195600 | Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@dehydrogenase, putative, expressed | K00083: cinnamyl-alcohol dehydrogenase |
| 8 | Sobic.006G092700 | MLO domain containing protein, putative, expressed | K08472: mlo protein |
| 9 | Sobic.003G426500 | glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 10 | Sobic.005G175900 | expressed protein | - |
| 11 | Sobic.003G215300 | pleiotropic drug resistance protein, putative, expressed | - |
| 12 | Sobic.006G028500 | 1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed | - |
| 13 | Sobic.003G182200 | 1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed | - |
| 14 | Sobic.006G135300 | expressed protein | - |
| 15 | Sobic.001G503000 | "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed | - |
| 16 | Sobic.001G263300 | glycosyltransferase, putative, expressed | K18207: POMGNT2, protein O-mannose beta-1,4-N-acetylglucosaminyltransferase |
| 17 | Sobic.002G120400 | flavin monooxygenase, putative, expressed | - |
| 18 | Sobic.002G115600 | membrane protein, putative, expressed | - |
| 19 | Sobic.007G073000 | - | - |
| 20 | Sobic.005G115300 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
