Gene annotation
Transcriptome id Sobic.001G454900.1
Synonym MAN1, Sb01g042740, ATFRD3, FRD3
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
MATE efflux protein, putative, expressed
UniProt C5WSR5
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF168
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT1G51340 : MATE efflux family protein
RAP-DB (Rice) LOC_Os03g11734.1 : MATE efflux protein, putative, expressed
MaizeGDB (Corn) Zm00025a001325
Brachypodium KQK22870
Barley HORVU4Hr1G067510.22 , HORVU4Hr1G067510.23 , HORVU4Hr1G067510.20 , HORVU4Hr1G067510.21 , HORVU4Hr1G067510.26 , HORVU4Hr1G067510.27 , HORVU4Hr1G067510.24 , HORVU4Hr1G067510.25 , HORVU4Hr1G067510.28 , HORVU4Hr1G067510.29 , HORVU4Hr1G067510.12 , HORVU4Hr1G067510.10 , HORVU4Hr1G067510.13 , HORVU4Hr1G067510.19 , HORVU4Hr1G067510.18 , HORVU4Hr1G067510.11 , HORVU4Hr1G067510.17 , HORVU4Hr1G067510.16 , HORVU4Hr1G067510.15 , HORVU4Hr1G067510.14 , HORVU4Hr1G067510.9 , HORVU4Hr1G067510.8 , HORVU4Hr1G067510.3 , HORVU4Hr1G067510.2 , HORVU4Hr1G067510.1 , HORVU4Hr1G067510.7 , HORVU4Hr1G067510.6 , HORVU4Hr1G067510.5 , HORVU4Hr1G067510.4
Wheat TraesCS4A02G066800 , TraesCS4A02G066800 , TraesCS4D02G245000 , TraesCS4B02G244400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G097900 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
2 Sobic.010G268700 expansin precursor, putative, expressed -
3 Sobic.010G152500 glycosyltransferase, putative, expressed -
4 Sobic.007G111800 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
5 Sobic.006G085700 OsPDIL1-2 protein disulfide isomerase PDIL1-2, expressed K09580: PDIA1, protein disulfide-isomerase A1
6 Sobic.004G009200 transporter, major facilitator family, putative, expressed K02575: NRT, narK, nrtP, MFS transporter, NNP family, nitrate/nitrite transporter
7 Sobic.007G193200 MTA/SAH nucleosidase, putative, expressed K01244: 5'-methylthioadenosine nucleosidase
8 Sobic.003G382200 methyltransferase domain containing protein, expressed -
9 Sobic.002G391900 peroxidase precursor, putative, expressed -
10 Sobic.005G216600 plant protein of unknown function domain containing protein, expressed -
11 Sobic.005G197500 NBS-LRR disease resistance protein, putative, expressed -
12 Sobic.005G119900 reticuline oxidase-like protein precursor, putative, expressed -
13 Sobic.001G301000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expansin precursor, putative, expressed -
14 Sobic.005G106300 expressed protein -
15 Sobic.004G121600 expansin precursor, putative, expressed -
16 Sobic.007G015000 methyltransferase domain containing protein, expressed -
17 Sobic.005G182900 NBS-LRR disease resistance protein, putative, expressed -
18 Sobic.001G181600 dehydrogenase/reductase, putative, expressed -
19 Sobic.001G271300 expressed protein -
20 Sobic.003G441700 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -


Gene co-expression network
sample Sobic001G454900 Sobic001G454900 Sobic006G097900 Sobic006G097900 Sobic001G454900--Sobic006G097900 Sobic010G268700 Sobic010G268700 Sobic001G454900--Sobic010G268700 Sobic010G152500 Sobic010G152500 Sobic001G454900--Sobic010G152500 Sobic007G111800 Sobic007G111800 Sobic001G454900--Sobic007G111800 Sobic006G085700 Sobic006G085700 Sobic001G454900--Sobic006G085700 Sobic004G009200 Sobic004G009200 Sobic001G454900--Sobic004G009200 Sobic007G193200 Sobic007G193200 Sobic001G454900--Sobic007G193200 Sobic003G382200 Sobic003G382200 Sobic001G454900--Sobic003G382200 Sobic002G391900 Sobic002G391900 Sobic001G454900--Sobic002G391900 Sobic004G121600 Sobic004G121600 Sobic006G097900--Sobic004G121600 Sobic006G097900--Sobic010G268700 Sobic003G441700 Sobic003G441700 Sobic006G097900--Sobic003G441700 Sobic001G181600 Sobic001G181600 Sobic006G097900--Sobic001G181600 Sobic001G218400 Sobic001G218400 Sobic006G097900--Sobic001G218400 Sobic005G216600 Sobic005G216600 Sobic006G097900--Sobic005G216600 Sobic001G293100 Sobic001G293100 Sobic006G097900--Sobic001G293100 Sobic003G441800 Sobic003G441800 Sobic006G097900--Sobic003G441800 Sobic005G119900 Sobic005G119900 Sobic006G097900--Sobic005G119900 Sobic010G268700--Sobic006G097900 Sobic005G060200 Sobic005G060200 Sobic010G268700--Sobic005G060200 Sobic001G301000 Sobic001G301000 Sobic010G268700--Sobic001G301000 Sobic010G268700--Sobic005G216600 Sobic010G268700--Sobic001G293100 Sobic005G197500 Sobic005G197500 Sobic010G268700--Sobic005G197500 Sobic008G010500 Sobic008G010500 Sobic010G268700--Sobic008G010500 Sobic004G002901 Sobic004G002901 Sobic010G268700--Sobic004G002901 Sobic003G161400 Sobic003G161400 Sobic010G268700--Sobic003G161400 Sobic010G152500--Sobic003G382200 Sobic010G152500--Sobic004G009200 Sobic010G152500--Sobic002G391900 Sobic007G015100 Sobic007G015100 Sobic010G152500--Sobic007G015100 Sobic009G106100 Sobic009G106100 Sobic010G152500--Sobic009G106100 Sobic005G106300 Sobic005G106300 Sobic010G152500--Sobic005G106300 Sobic002G029500 Sobic002G029500 Sobic010G152500--Sobic002G029500 Sobic010G152500--Sobic006G097900 Sobic005G182900 Sobic005G182900 Sobic010G152500--Sobic005G182900 Sobic007G111800--Sobic006G097900 Sobic007G015000 Sobic007G015000 Sobic007G111800--Sobic007G015000 Sobic007G111800--Sobic010G268700 Sobic001G271300 Sobic001G271300 Sobic007G111800--Sobic001G271300 Sobic007G212000 Sobic007G212000 Sobic007G111800--Sobic007G212000 Sobic007G111800--Sobic001G293100 Sobic007G111800--Sobic005G106300 Sobic007G111800--Sobic010G152500 Sobic003G083800 Sobic003G083800 Sobic007G111800--Sobic003G083800 Sobic003G282300 Sobic003G282300 Sobic006G085700--Sobic003G282300 Sobic006G031100 Sobic006G031100 Sobic006G085700--Sobic006G031100 Sobic007G090600 Sobic007G090600 Sobic006G085700--Sobic007G090600 Sobic002G146000 Sobic002G146000 Sobic006G085700--Sobic002G146000 Sobic004G014600 Sobic004G014600 Sobic006G085700--Sobic004G014600 Sobic003G140200 Sobic003G140200 Sobic006G085700--Sobic003G140200 Sobic006G085700--Sobic003G441800 Sobic005G182800 Sobic005G182800 Sobic006G085700--Sobic005G182800 Sobic006G085700--Sobic010G152500 Sobic005G197400 Sobic005G197400 Sobic004G009200--Sobic005G197400 Sobic004G009200--Sobic010G152500 Sobic004G009200--Sobic005G197500 Sobic004G009200--Sobic003G382200 Sobic004G009200--Sobic009G106100 Sobic004G009200--Sobic005G106300 Sobic007G154100 Sobic007G154100 Sobic004G009200--Sobic007G154100 Sobic004G009200--Sobic005G182800 Sobic004G009200--Sobic007G015100 Sobic004G261500 Sobic004G261500 Sobic007G193200--Sobic004G261500 Sobic004G079900 Sobic004G079900 Sobic007G193200--Sobic004G079900 Sobic007G193200--Sobic001G181600 Sobic003G154500 Sobic003G154500 Sobic007G193200--Sobic003G154500 Sobic007G193200--Sobic001G218400 Sobic005G033000 Sobic005G033000 Sobic007G193200--Sobic005G033000 Sobic007G193200--Sobic001G454900 Sobic007G193200--Sobic005G119900 Sobic007G193200--Sobic003G441800 Sobic003G382200--Sobic010G152500 Sobic003G382200--Sobic002G391900 Sobic003G382200--Sobic004G009200 Sobic003G382200--Sobic009G106100 Sobic003G382200--Sobic005G216600 Sobic001G274400 Sobic001G274400 Sobic003G382200--Sobic001G274400 Sobic003G382200--Sobic005G106300 Sobic003G382200--Sobic005G182900 Sobic003G382200--Sobic005G197400 Sobic002G391900--Sobic003G382200 Sobic002G391900--Sobic010G152500 Sobic002G391900--Sobic004G009200 Sobic002G391900--Sobic009G106100 Sobic005G069500 Sobic005G069500 Sobic002G391900--Sobic005G069500 Sobic002G391900--Sobic006G097900 Sobic002G391900--Sobic005G216600 Sobic002G391900--Sobic006G031100 Sobic006G224500 Sobic006G224500 Sobic002G391900--Sobic006G224500
Octagon: transcription factors


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