Gene annotation
Transcriptome id Sobic.009G084400.2,Sobic.009G084400.1
Synonym ATPMT5, PMT5, ATPLT5, Sb09g007450
Functional annotation transporter family protein, putative, expressed
UniProt C5YV56
Pfam PF07690
Panther DB PTHR23500 PTHR23500:SF78
NCBI CDD KOG0254; Predicted transporter (major facilitator superfamily)
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT3G18830 : polyol/monosaccharide transporter 5
RAP-DB (Rice) LOC_Os03g10100.1 : transporter family protein, putative, expressed
MaizeGDB (Corn) Zm00025a053173 , Zm00025a001208 , Zm00025a001212
Brachypodium KQK23113
Barley HORVU4Hr1G071020.1 , HORVU4Hr1G071020.2 , HORVU2Hr1G036590.4 , HORVU2Hr1G036590.1
Wheat TraesCS2A02G188700 , TraesCS4B02G262800 , TraesCS4D02G262900 , TraesCS2A02G188600 , TraesCS2B02G218700 , TraesCS4A02G042000 , TraesCS2D02G199100 , TraesCS2B02G218600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G197000 cytochrome P450 72A1, putative, expressed K10717: cytokinin trans-hydroxylase
2 Sobic.002G029500 cytochrome P450 84A1, putative, expressed K09755: CYP84A, ferulate-5-hydroxylase
3 Sobic.010G213600 histidine kinase, putative, expressed -
4 Sobic.002G274600 glycosyl transferase family 8 protein, expressed -
5 Sobic.002G391300 peroxidase precursor, putative, expressed K00430: peroxidase
6 Sobic.005G134200 "domain confirmed by Pfam database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsGH3.13 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
7 Sobic.005G226400 RGH1A, putative, expressed -
8 Sobic.006G092100 no apical meristem protein, putative, expressed -
9 Sobic.006G171100 expansin precursor, putative, expressed -
10 Sobic.002G029600 CBS domain containing membrane protein, putative, expressed K00088: IMPDH, IMP dehydrogenase
11 Sobic.002G289500 carbohydrate binding protein, putative, expressed -
12 Sobic.001G327200 expressed protein -
13 Sobic.007G064900 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
14 Sobic.006G059800 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
15 Sobic.001G415100 terpene synthase, putative, expressed -
16 Sobic.002G082000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@kelch repeat protein, putative, expressed -
17 Sobic.005G182900 NBS-LRR disease resistance protein, putative, expressed -
18 Sobic.002G154700 regulatory protein, putative, expressed -
19 Sobic.002G019000 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
20 Sobic.003G079100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@muconate cycloisomerase, putative, expressed -


Gene co-expression network
sample Sobic009G084400 Sobic009G084400 Sobic002G197000 Sobic002G197000 Sobic009G084400--Sobic002G197000 Sobic002G029500 Sobic002G029500 Sobic009G084400--Sobic002G029500 Sobic010G213600 Sobic010G213600 Sobic009G084400--Sobic010G213600 Sobic002G274600 Sobic002G274600 Sobic009G084400--Sobic002G274600 Sobic002G391300 Sobic002G391300 Sobic009G084400--Sobic002G391300 Sobic005G134200 Sobic005G134200 Sobic009G084400--Sobic005G134200 Sobic005G226400 Sobic005G226400 Sobic009G084400--Sobic005G226400 Sobic006G092100 Sobic006G092100 Sobic009G084400--Sobic006G092100 Sobic006G171100 Sobic006G171100 Sobic009G084400--Sobic006G171100 Sobic002G197000--Sobic009G084400 Sobic002G197000--Sobic002G029500 Sobic002G197000--Sobic002G274600 Sobic006G230100 Sobic006G230100 Sobic002G197000--Sobic006G230100 Sobic007G064900 Sobic007G064900 Sobic002G197000--Sobic007G064900 Sobic002G197000--Sobic006G092100 Sobic004G299500 Sobic004G299500 Sobic002G197000--Sobic004G299500 Sobic002G197000--Sobic005G226400 Sobic006G059800 Sobic006G059800 Sobic002G197000--Sobic006G059800 Sobic005G182900 Sobic005G182900 Sobic002G029500--Sobic005G182900 Sobic002G029500--Sobic007G064900 Sobic005G097900 Sobic005G097900 Sobic002G029500--Sobic005G097900 Sobic005G106300 Sobic005G106300 Sobic002G029500--Sobic005G106300 Sobic008G033100 Sobic008G033100 Sobic002G029500--Sobic008G033100 Sobic002G289500 Sobic002G289500 Sobic002G029500--Sobic002G289500 Sobic001G415100 Sobic001G415100 Sobic002G029500--Sobic001G415100 Sobic007G015000 Sobic007G015000 Sobic002G029500--Sobic007G015000 Sobic002G082000 Sobic002G082000 Sobic002G029500--Sobic002G082000 Sobic010G213600--Sobic008G033100 Sobic005G065700 Sobic005G065700 Sobic010G213600--Sobic005G065700 Sobic002G019000 Sobic002G019000 Sobic010G213600--Sobic002G019000 Sobic004G014600 Sobic004G014600 Sobic010G213600--Sobic004G014600 Sobic010G213600--Sobic005G182900 Sobic009G165100 Sobic009G165100 Sobic010G213600--Sobic009G165100 Sobic003G079100 Sobic003G079100 Sobic010G213600--Sobic003G079100 Sobic003G161400 Sobic003G161400 Sobic010G213600--Sobic003G161400 Sobic001G342000 Sobic001G342000 Sobic010G213600--Sobic001G342000 Sobic002G274600--Sobic009G084400 Sobic002G274600--Sobic002G197000 Sobic004G079900 Sobic004G079900 Sobic002G274600--Sobic004G079900 Sobic010G010000 Sobic010G010000 Sobic002G274600--Sobic010G010000 Sobic002G274600--Sobic004G014600 Sobic001G218400 Sobic001G218400 Sobic002G274600--Sobic001G218400 Sobic002G029600 Sobic002G029600 Sobic002G274600--Sobic002G029600 Sobic002G274600--Sobic006G171100 Sobic002G274600--Sobic005G106300 Sobic003G441601 Sobic003G441601 Sobic002G391300--Sobic003G441601 Sobic002G111900 Sobic002G111900 Sobic002G391300--Sobic002G111900 Sobic010G191700 Sobic010G191700 Sobic002G391300--Sobic010G191700 Sobic010G241900 Sobic010G241900 Sobic002G391300--Sobic010G241900 Sobic002G391300--Sobic006G171100 Sobic010G128300 Sobic010G128300 Sobic002G391300--Sobic010G128300 Sobic002G391300--Sobic005G134200 Sobic002G391300--Sobic002G289500 Sobic009G136800 Sobic009G136800 Sobic002G391300--Sobic009G136800 Sobic010G269000 Sobic010G269000 Sobic005G134200--Sobic010G269000 Sobic004G008600 Sobic004G008600 Sobic005G134200--Sobic004G008600 Sobic005G134200--Sobic005G226400 Sobic005G134200--Sobic002G391300 Sobic005G134200--Sobic010G191700 Sobic005G134200--Sobic010G241900 Sobic005G134200--Sobic010G128300 Sobic007G220400 Sobic007G220400 Sobic005G134200--Sobic007G220400 Sobic006G047200 Sobic006G047200 Sobic005G134200--Sobic006G047200 Sobic005G226400--Sobic005G134200 Sobic005G226400--Sobic009G136800 Sobic005G226400--Sobic010G128300 Sobic005G226400--Sobic002G391300 Sobic005G226400--Sobic006G171100 Sobic005G223700 Sobic005G223700 Sobic005G226400--Sobic005G223700 Sobic005G226400--Sobic006G047200 Sobic005G226350 Sobic005G226350 Sobic005G226400--Sobic005G226350 Sobic005G226400--Sobic010G010000 Sobic006G092100--Sobic010G213600 Sobic010G152300 Sobic010G152300 Sobic006G092100--Sobic010G152300 Sobic001G293100 Sobic001G293100 Sobic006G092100--Sobic001G293100 Sobic006G092100--Sobic008G033100 Sobic008G138700 Sobic008G138700 Sobic006G092100--Sobic008G138700 Sobic006G092100--Sobic005G097900 Sobic006G092100--Sobic005G182900 Sobic006G092100--Sobic002G029500 Sobic006G092100--Sobic002G019000 Sobic006G171100--Sobic009G136800 Sobic006G171100--Sobic002G391300 Sobic006G171100--Sobic010G010000 Sobic006G171100--Sobic003G441601 Sobic006G171100--Sobic002G111900 Sobic005G046400 Sobic005G046400 Sobic006G171100--Sobic005G046400 Sobic006G171100--Sobic002G289500 Sobic006G171100--Sobic005G226400 Sobic006G171100--Sobic006G047200
Octagon: transcription factors


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