Gene annotation
Transcriptome id Sobic.009G210300.1
Synonym SOS3, SbCBL08,calcineurin B-like proteins, ATSOS3, CBL4, Sb09g026650
Functional annotation similar to Calcium sensing protein (PubMedID : 29862293)
Cellular calcium signals (PubMedID : 19860013)
calcineurin B, putative, expressed
UniProt C4P7Y7 , A0A1B6P9N9
Pfam PF13499 PF13202
Panther DB PTHR23056 PTHR23056:SF45
NCBI CDD KOG0034; Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein
KEGG Orthology K06268; PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
Gene Ontology GO:0005509; calcium ion binding


Orthologs (automatic annotation)
TAIR AT5G24270 : Calcium-binding EF-hand family protein
RAP-DB (Rice) LOC_Os05g45810.1 : calcineurin B, putative, expressed
MaizeGDB (Corn) Zm00025a044246
Brachypodium KQK05213 , KQK05216 , KQK05215 , KQK05214 , PNT70827 , PNT70826 , PNT70825 , PNT70824 , PNT70823
Barley HORVU1Hr1G080820.11 , HORVU1Hr1G080820.12 , HORVU1Hr1G080820.8 , HORVU1Hr1G080820.5 , HORVU1Hr1G080820.4 , HORVU1Hr1G080820.7 , HORVU1Hr1G080820.6 , HORVU1Hr1G080820.2
Wheat TraesCS1B02G370900 , TraesCS1D02G358200 , TraesCS1D02G358200 , TraesCS1D02G358400 , TraesCS1A02G352200 , TraesCS1B02G370500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G106900 "C3 PTPC, root-inducible gene"(PubMedID : 2308851)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoenolphyruvate carboxylase(PubMedID : 26904072)@phosphoenolpyruvate carboxylase, putative, expressed K01595: phosphoenolpyruvate carboxylase
2 Sobic.005G024900 major facilitator superfamily antiporter, putative, expressed -
3 Sobic.009G167700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
4 Sobic.005G152200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed K00815: tyrosine aminotransferase
5 Sobic.001G334600 OsFBX95 - F-box domain containing protein, expressed -
6 Sobic.001G010400 snRK1-interacting protein 1, putative, expressed -
7 Sobic.001G196300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K09755: CYP84A, ferulate-5-hydroxylase
8 Sobic.004G347300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@thioredoxin, putative, expressed -
9 Sobic.004G341200 Glutathione reductases(PubMedID : 23783412)@glutathione reductase, putative, expressed K00383: GSR, glutathione reductase (NADPH)
10 Sobic.003G259700 transmembrane protein 93, putative, expressed -
11 Sobic.003G229200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450 72A1, putative, expressed K07424: cytochrome P450 family 3 subfamily A
12 Sobic.005G139400 SNARE associated Golgi protein, putative, expressed -
13 Sobic.003G167500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@heavy metal-associated domain containing protein, expressed -
14 Sobic.002G244100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.001G132000 fumarylacetoacetase, putative, expressed K01557: acylpyruvate hydrolase
16 Sobic.003G303300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed K14454: aspartate aminotransferase, cytoplasmic
17 Sobic.002G017600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.003G061400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@basic helix-loop-helix, putative, expressed -
19 Sobic.003G354400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
20 Sobic.001G089800 nuclear prelamin A recognition factor, putative, expressed -


Gene co-expression network
sample Sobic009G210300 Sobic009G210300 Sobic004G106900 Sobic004G106900 Sobic009G210300--Sobic004G106900 Sobic005G024900 Sobic005G024900 Sobic009G210300--Sobic005G024900 Sobic009G167700 Sobic009G167700 Sobic009G210300--Sobic009G167700 Sobic005G152200 Sobic005G152200 Sobic009G210300--Sobic005G152200 Sobic001G334600 Sobic001G334600 Sobic009G210300--Sobic001G334600 Sobic001G010400 Sobic001G010400 Sobic009G210300--Sobic001G010400 Sobic001G196300 Sobic001G196300 Sobic009G210300--Sobic001G196300 Sobic004G347300 Sobic004G347300 Sobic009G210300--Sobic004G347300 Sobic004G341200 Sobic004G341200 Sobic009G210300--Sobic004G341200 Sobic004G106900--Sobic004G341200 Sobic004G106900--Sobic009G210300 Sobic002G155400 Sobic002G155400 Sobic004G106900--Sobic002G155400 Sobic001G386400 Sobic001G386400 Sobic004G106900--Sobic001G386400 Sobic006G119200 Sobic006G119200 Sobic004G106900--Sobic006G119200 Sobic004G106900--Sobic009G167700 Sobic005G139400 Sobic005G139400 Sobic004G106900--Sobic005G139400 Sobic003G149200 Sobic003G149200 Sobic004G106900--Sobic003G149200 Sobic009G234800 Sobic009G234800 Sobic004G106900--Sobic009G234800 Sobic002G087800 Sobic002G087800 Sobic005G024900--Sobic002G087800 Sobic001G132000 Sobic001G132000 Sobic005G024900--Sobic001G132000 Sobic003G061400 Sobic003G061400 Sobic005G024900--Sobic003G061400 Sobic003G440900 Sobic003G440900 Sobic005G024900--Sobic003G440900 Sobic003G241500 Sobic003G241500 Sobic005G024900--Sobic003G241500 Sobic004G333200 Sobic004G333200 Sobic005G024900--Sobic004G333200 Sobic006G244400 Sobic006G244400 Sobic005G024900--Sobic006G244400 Sobic005G024900--Sobic005G152200 Sobic006G127100 Sobic006G127100 Sobic005G024900--Sobic006G127100 Sobic002G244100 Sobic002G244100 Sobic009G167700--Sobic002G244100 Sobic009G167700--Sobic004G341200 Sobic004G102400 Sobic004G102400 Sobic009G167700--Sobic004G102400 Sobic009G167700--Sobic001G386400 Sobic010G016400 Sobic010G016400 Sobic009G167700--Sobic010G016400 Sobic001G089800 Sobic001G089800 Sobic009G167700--Sobic001G089800 Sobic003G354400 Sobic003G354400 Sobic009G167700--Sobic003G354400 Sobic009G167700--Sobic001G132000 Sobic009G167700--Sobic006G119200 Sobic002G024100 Sobic002G024100 Sobic005G152200--Sobic002G024100 Sobic005G152200--Sobic005G024900 Sobic009G172500 Sobic009G172500 Sobic005G152200--Sobic009G172500 Sobic006G096400 Sobic006G096400 Sobic005G152200--Sobic006G096400 Sobic003G229200 Sobic003G229200 Sobic005G152200--Sobic003G229200 Sobic009G161401 Sobic009G161401 Sobic005G152200--Sobic009G161401 Sobic005G152200--Sobic009G210300 Sobic007G078100 Sobic007G078100 Sobic005G152200--Sobic007G078100 Sobic005G152200--Sobic001G010400 Sobic009G057300 Sobic009G057300 Sobic001G334600--Sobic009G057300 Sobic001G334600--Sobic003G354400 Sobic004G101900 Sobic004G101900 Sobic001G334600--Sobic004G101900 Sobic003G061800 Sobic003G061800 Sobic001G334600--Sobic003G061800 Sobic001G111150 Sobic001G111150 Sobic001G334600--Sobic001G111150 Sobic004G225100 Sobic004G225100 Sobic001G334600--Sobic004G225100 Sobic006G199000 Sobic006G199000 Sobic001G334600--Sobic006G199000 Sobic001G015500 Sobic001G015500 Sobic001G334600--Sobic001G015500 Sobic010G264700 Sobic010G264700 Sobic001G334600--Sobic010G264700 Sobic002G249000 Sobic002G249000 Sobic001G010400--Sobic002G249000 Sobic007G148800 Sobic007G148800 Sobic001G010400--Sobic007G148800 Sobic004G185900 Sobic004G185900 Sobic001G010400--Sobic004G185900 Sobic002G113800 Sobic002G113800 Sobic001G010400--Sobic002G113800 Sobic001G393800 Sobic001G393800 Sobic001G010400--Sobic001G393800 Sobic002G258100 Sobic002G258100 Sobic001G010400--Sobic002G258100 Sobic002G180600 Sobic002G180600 Sobic001G010400--Sobic002G180600 Sobic008G107500 Sobic008G107500 Sobic001G010400--Sobic008G107500 Sobic001G010400--Sobic010G016400 Sobic003G167500 Sobic003G167500 Sobic001G196300--Sobic003G167500 Sobic002G242500 Sobic002G242500 Sobic001G196300--Sobic002G242500 Sobic001G196300--Sobic001G010400 Sobic002G153500 Sobic002G153500 Sobic001G196300--Sobic002G153500 Sobic009G111600 Sobic009G111600 Sobic001G196300--Sobic009G111600 Sobic002G196100 Sobic002G196100 Sobic001G196300--Sobic002G196100 Sobic001G196300--Sobic002G249000 Sobic004G284500 Sobic004G284500 Sobic001G196300--Sobic004G284500 Sobic009G241700 Sobic009G241700 Sobic001G196300--Sobic009G241700 Sobic004G347300--Sobic010G016400 Sobic004G347300--Sobic005G139400 Sobic001G023200 Sobic001G023200 Sobic004G347300--Sobic001G023200 Sobic004G347300--Sobic006G119200 Sobic004G347300--Sobic007G148800 Sobic004G347300--Sobic001G132000 Sobic004G347300--Sobic001G010400 Sobic009G004200 Sobic009G004200 Sobic004G347300--Sobic009G004200 Sobic004G012400 Sobic004G012400 Sobic004G347300--Sobic004G012400 Sobic004G341200--Sobic001G089800 Sobic002G322900 Sobic002G322900 Sobic004G341200--Sobic002G322900 Sobic004G341200--Sobic009G167700 Sobic001G512800 Sobic001G512800 Sobic004G341200--Sobic001G512800 Sobic009G193700 Sobic009G193700 Sobic004G341200--Sobic009G193700 Sobic001G488500 Sobic001G488500 Sobic004G341200--Sobic001G488500 Sobic001G003000 Sobic001G003000 Sobic004G341200--Sobic001G003000 Sobic004G236600 Sobic004G236600 Sobic004G341200--Sobic004G236600 Sobic003G338400 Sobic003G338400 Sobic004G341200--Sobic003G338400
Octagon: transcription factors


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