Gene annotation
Transcriptome id Sobic.004G347300.2
Synonym Sb04g037400, WCRKC2
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
thioredoxin, putative, expressed
UniProt A0A1Z5RQU3
Pfam PF00085
Panther DB PTHR10438 PTHR10438:SF297
NCBI CDD KOG0907; Thioredoxin
KEGG Orthology -
Gene Ontology GO:0015035; protein disulfide oxidoreductase activity GO:0006662glycerol ether metabolic process


Orthologs (automatic annotation)
TAIR AT5G04260 : WCRKC thioredoxin 2
RAP-DB (Rice) LOC_Os02g57380.1 : thioredoxin, putative, expressed
MaizeGDB (Corn) Zm00025a022619
Brachypodium PNT69442 , KQK01383
Barley -
Wheat TraesCS6A02G394200 , TraesCS6B02G434200 , TraesCS6D02G379700 , TraesCS6D02G379700
Populus -


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cDNA sequences
Sobic.004G347300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G016400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxisomal biogenesis factor 11, putative, expressed -
2 Sobic.005G139400 SNARE associated Golgi protein, putative, expressed -
3 Sobic.001G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@electron transfer flavoprotein subunit alpha, mitochondrial precursor, putative, expressed K03522: fixB, electron transfer flavoprotein alpha subunit
4 Sobic.006G119200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@copper methylamine oxidase precursor, putative, expressed K00276: AOC3, AOC2, primary-amine oxidase
5 Sobic.007G148800 cupin superfamily protein, putative, expressed K09705: uncharacterized protein
6 Sobic.001G132000 fumarylacetoacetase, putative, expressed K01557: acylpyruvate hydrolase
7 Sobic.001G010400 snRK1-interacting protein 1, putative, expressed -
8 Sobic.009G004200 MAC/Perforin domain containing protein, putative, expressed -
9 Sobic.004G012400 GHMP kinases ATP-binding protein, putative, expressed K00869: E2.7.1.36, MVK, mevalonate kinase
10 Sobic.009G234800 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
11 Sobic.009G238800 expressed protein -
12 Sobic.006G217700 gamma-soluble NSF attachment protein, putative, expressed -
13 Sobic.005G079900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@F-box domain containing protein, expressed -
14 Sobic.006G140000 receptor-like protein kinase precursor, putative, expressed -
15 Sobic.009G167700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
16 Sobic.003G229200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450 72A1, putative, expressed K07424: cytochrome P450 family 3 subfamily A
17 Sobic.006G192700 expressed protein -
18 Sobic.003G009100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17
19 Sobic.008G147700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein K14169: CTU2, cytoplasmic tRNA 2-thiolation protein 2
20 Sobic.006G114800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ras-related protein, putative, expressed K07877: Ras-related protein Rab-2A


Gene co-expression network
sample Sobic004G347300 Sobic004G347300 Sobic010G016400 Sobic010G016400 Sobic004G347300--Sobic010G016400 Sobic005G139400 Sobic005G139400 Sobic004G347300--Sobic005G139400 Sobic001G023200 Sobic001G023200 Sobic004G347300--Sobic001G023200 Sobic006G119200 Sobic006G119200 Sobic004G347300--Sobic006G119200 Sobic007G148800 Sobic007G148800 Sobic004G347300--Sobic007G148800 Sobic001G132000 Sobic001G132000 Sobic004G347300--Sobic001G132000 Sobic001G010400 Sobic001G010400 Sobic004G347300--Sobic001G010400 Sobic009G004200 Sobic009G004200 Sobic004G347300--Sobic009G004200 Sobic004G012400 Sobic004G012400 Sobic004G347300--Sobic004G012400 Sobic010G016400--Sobic005G139400 Sobic009G167700 Sobic009G167700 Sobic010G016400--Sobic009G167700 Sobic010G016400--Sobic004G347300 Sobic010G016400--Sobic006G119200 Sobic010G016400--Sobic007G148800 Sobic006G217700 Sobic006G217700 Sobic010G016400--Sobic006G217700 Sobic010G016400--Sobic001G010400 Sobic004G102400 Sobic004G102400 Sobic010G016400--Sobic004G102400 Sobic009G172500 Sobic009G172500 Sobic010G016400--Sobic009G172500 Sobic005G139400--Sobic010G016400 Sobic005G139400--Sobic004G347300 Sobic006G232000 Sobic006G232000 Sobic005G139400--Sobic006G232000 Sobic005G139400--Sobic001G010400 Sobic006G192700 Sobic006G192700 Sobic005G139400--Sobic006G192700 Sobic002G113800 Sobic002G113800 Sobic005G139400--Sobic002G113800 Sobic005G139400--Sobic001G132000 Sobic005G139400--Sobic007G148800 Sobic004G185900 Sobic004G185900 Sobic005G139400--Sobic004G185900 Sobic003G009100 Sobic003G009100 Sobic001G023200--Sobic003G009100 Sobic002G258100 Sobic002G258100 Sobic001G023200--Sobic002G258100 Sobic001G023200--Sobic001G010400 Sobic001G023200--Sobic004G347300 Sobic001G393800 Sobic001G393800 Sobic001G023200--Sobic001G393800 Sobic004G203100 Sobic004G203100 Sobic001G023200--Sobic004G203100 Sobic001G023200--Sobic010G016400 Sobic002G113300 Sobic002G113300 Sobic001G023200--Sobic002G113300 Sobic007G106900 Sobic007G106900 Sobic001G023200--Sobic007G106900 Sobic001G386400 Sobic001G386400 Sobic006G119200--Sobic001G386400 Sobic006G119200--Sobic001G132000 Sobic006G119200--Sobic010G016400 Sobic006G119200--Sobic009G167700 Sobic002G155400 Sobic002G155400 Sobic006G119200--Sobic002G155400 Sobic009G234800 Sobic009G234800 Sobic006G119200--Sobic009G234800 Sobic001G512800 Sobic001G512800 Sobic006G119200--Sobic001G512800 Sobic005G231900 Sobic005G231900 Sobic006G119200--Sobic005G231900 Sobic006G119200--Sobic004G347300 Sobic007G148800--Sobic001G010400 Sobic007G148800--Sobic010G016400 Sobic007G148800--Sobic006G217700 Sobic007G148800--Sobic004G185900 Sobic007G148700 Sobic007G148700 Sobic007G148800--Sobic007G148700 Sobic007G148800--Sobic005G139400 Sobic006G140000 Sobic006G140000 Sobic007G148800--Sobic006G140000 Sobic007G148800--Sobic004G347300 Sobic007G148800--Sobic002G113800 Sobic001G132000--Sobic006G119200 Sobic001G132000--Sobic009G167700 Sobic010G210200 Sobic010G210200 Sobic001G132000--Sobic010G210200 Sobic005G024900 Sobic005G024900 Sobic001G132000--Sobic005G024900 Sobic004G101900 Sobic004G101900 Sobic001G132000--Sobic004G101900 Sobic003G061400 Sobic003G061400 Sobic001G132000--Sobic003G061400 Sobic007G219900 Sobic007G219900 Sobic001G132000--Sobic007G219900 Sobic005G079900 Sobic005G079900 Sobic001G132000--Sobic005G079900 Sobic002G304000 Sobic002G304000 Sobic001G132000--Sobic002G304000 Sobic002G249000 Sobic002G249000 Sobic001G010400--Sobic002G249000 Sobic001G010400--Sobic007G148800 Sobic001G010400--Sobic004G185900 Sobic001G010400--Sobic002G113800 Sobic001G010400--Sobic001G393800 Sobic001G010400--Sobic002G258100 Sobic002G180600 Sobic002G180600 Sobic001G010400--Sobic002G180600 Sobic008G107500 Sobic008G107500 Sobic001G010400--Sobic008G107500 Sobic001G010400--Sobic010G016400 Sobic006G114800 Sobic006G114800 Sobic009G004200--Sobic006G114800 Sobic001G151800 Sobic001G151800 Sobic009G004200--Sobic001G151800 Sobic009G236200 Sobic009G236200 Sobic009G004200--Sobic009G236200 Sobic009G004200--Sobic006G119200 Sobic009G004200--Sobic009G167700 Sobic009G004200--Sobic004G347300 Sobic009G004200--Sobic010G016400 Sobic009G004200--Sobic006G140000 Sobic009G004200--Sobic001G386400 Sobic004G012400--Sobic004G347300 Sobic004G012400--Sobic006G119200 Sobic004G012400--Sobic005G139400 Sobic004G012400--Sobic009G234800 Sobic004G012400--Sobic010G016400 Sobic004G012400--Sobic005G079900 Sobic005G058900 Sobic005G058900 Sobic004G012400--Sobic005G058900 Sobic004G012400--Sobic001G132000 Sobic004G236200 Sobic004G236200 Sobic004G012400--Sobic004G236200
Octagon: transcription factors


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