Gene annotation
Transcriptome id Sobic.004G012400.1
Synonym MVK, MK, Sb04g001220
Functional annotation GHMP kinases ATP-binding protein, putative, expressed
UniProt C5XSB3
Pfam PF08544 PF00288
Panther DB PTHR10457 PTHR10457:SF4
NCBI CDD KOG1511; Mevalonate kinase MVK/ERG12
KEGG Orthology K00869; E2.7.1.36, MVK, mevalonate kinase
Gene Ontology GO:0005524; ATP binding GO:0008299isoprenoid biosynthetic process GO:0005737cytoplasm GO:0004496mevalonate kinase activity


Orthologs (automatic annotation)
TAIR AT5G27450 : mevalonate kinase
RAP-DB (Rice) LOC_Os10g18220.1 : GHMP kinases ATP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a035036
Brachypodium PNT70530 , KQK04403
Barley HORVU2Hr1G118670.5 , HORVU2Hr1G118670.1 , HORVU2Hr1G118670.3 , HORVU2Hr1G118670.2
Wheat TraesCS2B02G596500 , TraesCS2D02G599600 , TraesCS2A02G586900 , TraesCS2A02G586900
Populus -


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cDNA sequences
Sobic.004G012400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G347300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@thioredoxin, putative, expressed -
2 Sobic.006G119200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@copper methylamine oxidase precursor, putative, expressed K00276: AOC3, AOC2, primary-amine oxidase
3 Sobic.005G139400 SNARE associated Golgi protein, putative, expressed -
4 Sobic.009G234800 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
5 Sobic.010G016400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxisomal biogenesis factor 11, putative, expressed -
6 Sobic.005G079900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@F-box domain containing protein, expressed -
7 Sobic.005G058900 zinc finger, C3HC4 type domain containing protein, expressed -
8 Sobic.001G132000 fumarylacetoacetase, putative, expressed K01557: acylpyruvate hydrolase
9 Sobic.004G236200 SEC6, putative, expressed K06110: EXOC3, exocyst complex component 3
10 Sobic.009G238800 expressed protein -
11 Sobic.001G427100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
12 Sobic.006G232000 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
13 Sobic.001G322700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@5-oxoprolinase, putative, expressed K01469: OPLAH, OXP1, 5-oxoprolinase (ATP-hydrolysing)
14 Sobic.002G431000 transporter, putative, expressed -
15 Sobic.007G128600 CC-NBS-LRR protein, putative, expressed -
16 Sobic.006G083400 OsPDIL5-2 protein disulfide isomerase PDIL5-2, expressed K09580: PDIA1, protein disulfide-isomerase A1
17 Sobic.002G152200 AP2-associated protein kinase 1, putative, expressed K08853: AP2-associated kinase
18 Sobic.009G235600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
19 Sobic.001G512800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
20 Sobic.004G112900 expressed protein -


Gene co-expression network
sample Sobic004G012400 Sobic004G012400 Sobic004G347300 Sobic004G347300 Sobic004G012400--Sobic004G347300 Sobic006G119200 Sobic006G119200 Sobic004G012400--Sobic006G119200 Sobic005G139400 Sobic005G139400 Sobic004G012400--Sobic005G139400 Sobic009G234800 Sobic009G234800 Sobic004G012400--Sobic009G234800 Sobic010G016400 Sobic010G016400 Sobic004G012400--Sobic010G016400 Sobic005G079900 Sobic005G079900 Sobic004G012400--Sobic005G079900 Sobic005G058900 Sobic005G058900 Sobic004G012400--Sobic005G058900 Sobic001G132000 Sobic001G132000 Sobic004G012400--Sobic001G132000 Sobic004G236200 Sobic004G236200 Sobic004G012400--Sobic004G236200 Sobic004G347300--Sobic010G016400 Sobic004G347300--Sobic005G139400 Sobic001G023200 Sobic001G023200 Sobic004G347300--Sobic001G023200 Sobic004G347300--Sobic006G119200 Sobic007G148800 Sobic007G148800 Sobic004G347300--Sobic007G148800 Sobic004G347300--Sobic001G132000 Sobic001G010400 Sobic001G010400 Sobic004G347300--Sobic001G010400 Sobic009G004200 Sobic009G004200 Sobic004G347300--Sobic009G004200 Sobic004G347300--Sobic004G012400 Sobic001G386400 Sobic001G386400 Sobic006G119200--Sobic001G386400 Sobic006G119200--Sobic001G132000 Sobic006G119200--Sobic010G016400 Sobic009G167700 Sobic009G167700 Sobic006G119200--Sobic009G167700 Sobic002G155400 Sobic002G155400 Sobic006G119200--Sobic002G155400 Sobic006G119200--Sobic009G234800 Sobic001G512800 Sobic001G512800 Sobic006G119200--Sobic001G512800 Sobic005G231900 Sobic005G231900 Sobic006G119200--Sobic005G231900 Sobic006G119200--Sobic004G347300 Sobic005G139400--Sobic010G016400 Sobic005G139400--Sobic004G347300 Sobic006G232000 Sobic006G232000 Sobic005G139400--Sobic006G232000 Sobic005G139400--Sobic001G010400 Sobic006G192700 Sobic006G192700 Sobic005G139400--Sobic006G192700 Sobic002G113800 Sobic002G113800 Sobic005G139400--Sobic002G113800 Sobic005G139400--Sobic001G132000 Sobic005G139400--Sobic007G148800 Sobic004G185900 Sobic004G185900 Sobic005G139400--Sobic004G185900 Sobic009G234800--Sobic005G079900 Sobic003G226200 Sobic003G226200 Sobic009G234800--Sobic003G226200 Sobic009G234800--Sobic006G119200 Sobic009G234800--Sobic005G231900 Sobic001G488500 Sobic001G488500 Sobic009G234800--Sobic001G488500 Sobic009G234800--Sobic001G512800 Sobic004G246200 Sobic004G246200 Sobic009G234800--Sobic004G246200 Sobic009G234800--Sobic010G016400 Sobic007G041400 Sobic007G041400 Sobic009G234800--Sobic007G041400 Sobic010G016400--Sobic005G139400 Sobic010G016400--Sobic009G167700 Sobic010G016400--Sobic004G347300 Sobic010G016400--Sobic006G119200 Sobic010G016400--Sobic007G148800 Sobic006G217700 Sobic006G217700 Sobic010G016400--Sobic006G217700 Sobic010G016400--Sobic001G010400 Sobic004G102400 Sobic004G102400 Sobic010G016400--Sobic004G102400 Sobic009G172500 Sobic009G172500 Sobic010G016400--Sobic009G172500 Sobic004G101900 Sobic004G101900 Sobic005G079900--Sobic004G101900 Sobic005G079900--Sobic009G234800 Sobic005G079900--Sobic005G231900 Sobic003G303300 Sobic003G303300 Sobic005G079900--Sobic003G303300 Sobic005G079900--Sobic001G488500 Sobic005G079900--Sobic001G512800 Sobic002G215700 Sobic002G215700 Sobic005G079900--Sobic002G215700 Sobic007G068100 Sobic007G068100 Sobic005G079900--Sobic007G068100 Sobic005G079900--Sobic004G246200 Sobic005G058900--Sobic006G192700 Sobic010G034500 Sobic010G034500 Sobic005G058900--Sobic010G034500 Sobic005G058900--Sobic005G079900 Sobic010G129600 Sobic010G129600 Sobic005G058900--Sobic010G129600 Sobic003G087000 Sobic003G087000 Sobic005G058900--Sobic003G087000 Sobic005G058900--Sobic004G347300 Sobic006G114400 Sobic006G114400 Sobic005G058900--Sobic006G114400 Sobic003G084000 Sobic003G084000 Sobic005G058900--Sobic003G084000 Sobic001G334600 Sobic001G334600 Sobic005G058900--Sobic001G334600 Sobic001G132000--Sobic006G119200 Sobic001G132000--Sobic009G167700 Sobic010G210200 Sobic010G210200 Sobic001G132000--Sobic010G210200 Sobic005G024900 Sobic005G024900 Sobic001G132000--Sobic005G024900 Sobic001G132000--Sobic004G101900 Sobic003G061400 Sobic003G061400 Sobic001G132000--Sobic003G061400 Sobic007G219900 Sobic007G219900 Sobic001G132000--Sobic007G219900 Sobic001G132000--Sobic005G079900 Sobic002G304000 Sobic002G304000 Sobic001G132000--Sobic002G304000 Sobic003G270600 Sobic003G270600 Sobic004G236200--Sobic003G270600 Sobic001G056800 Sobic001G056800 Sobic004G236200--Sobic001G056800 Sobic006G077300 Sobic006G077300 Sobic004G236200--Sobic006G077300 Sobic004G228800 Sobic004G228800 Sobic004G236200--Sobic004G228800 Sobic006G203300 Sobic006G203300 Sobic004G236200--Sobic006G203300 Sobic003G427600 Sobic003G427600 Sobic004G236200--Sobic003G427600 Sobic003G394200 Sobic003G394200 Sobic004G236200--Sobic003G394200 Sobic007G205900 Sobic007G205900 Sobic004G236200--Sobic007G205900 Sobic002G156000 Sobic002G156000 Sobic004G236200--Sobic002G156000
Octagon: transcription factors


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