Gene annotation
Transcriptome id Sobic.005G058900.1,Sobic.005G058900.2
Synonym
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1B6PQE8 , A0A1B6PQF0
Pfam PF00097
Panther DB PTHR16079
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G47570 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os11g07450.2 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a033984
Brachypodium KQJ89258 , KQJ89259 , KQJ89257 , PNT64104
Barley HORVU4Hr1G019360.14 , HORVU4Hr1G019360.17 , HORVU4Hr1G019360.11 , HORVU4Hr1G019360.10 , HORVU4Hr1G019360.13 , HORVU4Hr1G019360.12 , HORVU4Hr1G019360.19 , HORVU4Hr1G019360.18 , HORVU4Hr1G019360.1 , HORVU4Hr1G019360.3 , HORVU4Hr1G019360.2 , HORVU4Hr1G019360.5 , HORVU4Hr1G019360.4 , HORVU4Hr1G019360.7 , HORVU4Hr1G019360.6 , HORVU4Hr1G019360.9 , HORVU4Hr1G019360.8 , HORVU4Hr1G019360.16 , HORVU4Hr1G019360.42 , HORVU4Hr1G019360.43 , HORVU4Hr1G019360.40 , HORVU4Hr1G019360.41 , HORVU4Hr1G019360.15 , HORVU4Hr1G019360.33 , HORVU4Hr1G019360.32 , HORVU4Hr1G019360.31 , HORVU4Hr1G019360.30 , HORVU4Hr1G019360.37 , HORVU4Hr1G019360.36 , HORVU4Hr1G019360.35 , HORVU4Hr1G019360.34 , HORVU4Hr1G019360.39 , HORVU4Hr1G019360.38 , HORVU4Hr1G019360.20 , HORVU4Hr1G019360.21 , HORVU4Hr1G019360.22 , HORVU4Hr1G019360.23 , HORVU4Hr1G019360.24 , HORVU4Hr1G019360.25 , HORVU4Hr1G019360.27 , HORVU4Hr1G019360.28 , HORVU4Hr1G019360.29 , HORVU4Hr1G019360.26
Wheat TraesCS4D02G090400 , TraesCS4A02G222800 , TraesCS4B02G093600 , TraesCS4B02G093600 , TraesCS4B02G093600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G192700 expressed protein -
2 Sobic.010G034500 MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
3 Sobic.005G079900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@F-box domain containing protein, expressed -
4 Sobic.010G129600 dual specificity protein phosphatase, putative, expressed K04459: DUSP, dual specificity MAP kinase phosphatase
5 Sobic.003G087000 expressed protein -
6 Sobic.004G347300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@thioredoxin, putative, expressed -
7 Sobic.006G114400 OsGrx_S15.2 - glutaredoxin subgroup II, expressed K07390: grxD, monothiol glutaredoxin
8 Sobic.003G084000 transporter family protein, putative, expressed -
9 Sobic.001G334600 OsFBX95 - F-box domain containing protein, expressed -
10 Sobic.004G012400 GHMP kinases ATP-binding protein, putative, expressed K00869: E2.7.1.36, MVK, mevalonate kinase
11 Sobic.001G111150 - K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
12 Sobic.009G238800 expressed protein -
13 Sobic.008G186200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
14 Sobic.010G261600 ubiquitin interaction motif family protein, expressed -
15 Sobic.003G303300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed K14454: aspartate aminotransferase, cytoplasmic
16 Sobic.005G139400 SNARE associated Golgi protein, putative, expressed -
17 Sobic.006G271200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed K08342: cysteine protease ATG4
18 Sobic.009G234800 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
19 Sobic.010G151000 UAA transporter family domain containing protein, expressed K15272: solute carrier family 35 (UDP-sugar transporter), member A1/2/3
20 Sobic.010G228500 rab geranylgeranyl transferase like protein, putative, expressed K14050: geranylgeranyl transferase type-2 subunit alpha


Gene co-expression network
sample Sobic005G058900 Sobic005G058900 Sobic006G192700 Sobic006G192700 Sobic005G058900--Sobic006G192700 Sobic010G034500 Sobic010G034500 Sobic005G058900--Sobic010G034500 Sobic005G079900 Sobic005G079900 Sobic005G058900--Sobic005G079900 Sobic010G129600 Sobic010G129600 Sobic005G058900--Sobic010G129600 Sobic003G087000 Sobic003G087000 Sobic005G058900--Sobic003G087000 Sobic004G347300 Sobic004G347300 Sobic005G058900--Sobic004G347300 Sobic006G114400 Sobic006G114400 Sobic005G058900--Sobic006G114400 Sobic003G084000 Sobic003G084000 Sobic005G058900--Sobic003G084000 Sobic001G334600 Sobic001G334600 Sobic005G058900--Sobic001G334600 Sobic001G057800 Sobic001G057800 Sobic006G192700--Sobic001G057800 Sobic010G064600 Sobic010G064600 Sobic006G192700--Sobic010G064600 Sobic008G093000 Sobic008G093000 Sobic006G192700--Sobic008G093000 Sobic004G006200 Sobic004G006200 Sobic006G192700--Sobic004G006200 Sobic001G003000 Sobic001G003000 Sobic006G192700--Sobic001G003000 Sobic009G207000 Sobic009G207000 Sobic006G192700--Sobic009G207000 Sobic003G009100 Sobic003G009100 Sobic006G192700--Sobic003G009100 Sobic005G139400 Sobic005G139400 Sobic006G192700--Sobic005G139400 Sobic002G244100 Sobic002G244100 Sobic006G192700--Sobic002G244100 Sobic010G034500--Sobic005G058900 Sobic002G202400 Sobic002G202400 Sobic010G034500--Sobic002G202400 Sobic009G058500 Sobic009G058500 Sobic010G034500--Sobic009G058500 Sobic002G376300 Sobic002G376300 Sobic010G034500--Sobic002G376300 Sobic009G238800 Sobic009G238800 Sobic010G034500--Sobic009G238800 Sobic010G151000 Sobic010G151000 Sobic010G034500--Sobic010G151000 Sobic001G421400 Sobic001G421400 Sobic010G034500--Sobic001G421400 Sobic002G027800 Sobic002G027800 Sobic010G034500--Sobic002G027800 Sobic001G499000 Sobic001G499000 Sobic010G034500--Sobic001G499000 Sobic004G101900 Sobic004G101900 Sobic005G079900--Sobic004G101900 Sobic009G234800 Sobic009G234800 Sobic005G079900--Sobic009G234800 Sobic005G231900 Sobic005G231900 Sobic005G079900--Sobic005G231900 Sobic003G303300 Sobic003G303300 Sobic005G079900--Sobic003G303300 Sobic001G488500 Sobic001G488500 Sobic005G079900--Sobic001G488500 Sobic001G512800 Sobic001G512800 Sobic005G079900--Sobic001G512800 Sobic002G215700 Sobic002G215700 Sobic005G079900--Sobic002G215700 Sobic007G068100 Sobic007G068100 Sobic005G079900--Sobic007G068100 Sobic004G246200 Sobic004G246200 Sobic005G079900--Sobic004G246200 Sobic001G005600 Sobic001G005600 Sobic010G129600--Sobic001G005600 Sobic001G161900 Sobic001G161900 Sobic010G129600--Sobic001G161900 Sobic001G313500 Sobic001G313500 Sobic010G129600--Sobic001G313500 Sobic006G271200 Sobic006G271200 Sobic010G129600--Sobic006G271200 Sobic004G091200 Sobic004G091200 Sobic010G129600--Sobic004G091200 Sobic010G261600 Sobic010G261600 Sobic010G129600--Sobic010G261600 Sobic009G160600 Sobic009G160600 Sobic010G129600--Sobic009G160600 Sobic006G237900 Sobic006G237900 Sobic010G129600--Sobic006G237900 Sobic008G061100 Sobic008G061100 Sobic010G129600--Sobic008G061100 Sobic003G087000--Sobic010G064600 Sobic003G087000--Sobic010G261600 Sobic003G087000--Sobic006G114400 Sobic003G087000--Sobic008G093000 Sobic007G075500 Sobic007G075500 Sobic003G087000--Sobic007G075500 Sobic009G225000 Sobic009G225000 Sobic003G087000--Sobic009G225000 Sobic004G228800 Sobic004G228800 Sobic003G087000--Sobic004G228800 Sobic003G312200 Sobic003G312200 Sobic003G087000--Sobic003G312200 Sobic009G139800 Sobic009G139800 Sobic003G087000--Sobic009G139800 Sobic010G016400 Sobic010G016400 Sobic004G347300--Sobic010G016400 Sobic004G347300--Sobic005G139400 Sobic001G023200 Sobic001G023200 Sobic004G347300--Sobic001G023200 Sobic006G119200 Sobic006G119200 Sobic004G347300--Sobic006G119200 Sobic007G148800 Sobic007G148800 Sobic004G347300--Sobic007G148800 Sobic001G132000 Sobic001G132000 Sobic004G347300--Sobic001G132000 Sobic001G010400 Sobic001G010400 Sobic004G347300--Sobic001G010400 Sobic009G004200 Sobic009G004200 Sobic004G347300--Sobic009G004200 Sobic004G012400 Sobic004G012400 Sobic004G347300--Sobic004G012400 Sobic006G114400--Sobic009G139800 Sobic003G009300 Sobic003G009300 Sobic006G114400--Sobic003G009300 Sobic006G114400--Sobic003G087000 Sobic002G113800 Sobic002G113800 Sobic006G114400--Sobic002G113800 Sobic004G335000 Sobic004G335000 Sobic006G114400--Sobic004G335000 Sobic002G141700 Sobic002G141700 Sobic006G114400--Sobic002G141700 Sobic007G142500 Sobic007G142500 Sobic006G114400--Sobic007G142500 Sobic004G194900 Sobic004G194900 Sobic006G114400--Sobic004G194900 Sobic006G114400--Sobic009G225000 Sobic009G212600 Sobic009G212600 Sobic003G084000--Sobic009G212600 Sobic009G208100 Sobic009G208100 Sobic003G084000--Sobic009G208100 Sobic004G032800 Sobic004G032800 Sobic003G084000--Sobic004G032800 Sobic002G313900 Sobic002G313900 Sobic003G084000--Sobic002G313900 Sobic003G338300 Sobic003G338300 Sobic003G084000--Sobic003G338300 Sobic005G197100 Sobic005G197100 Sobic003G084000--Sobic005G197100 Sobic003G084000--Sobic005G079900 Sobic003G304200 Sobic003G304200 Sobic003G084000--Sobic003G304200 Sobic009G166600 Sobic009G166600 Sobic003G084000--Sobic009G166600 Sobic009G057300 Sobic009G057300 Sobic001G334600--Sobic009G057300 Sobic003G354400 Sobic003G354400 Sobic001G334600--Sobic003G354400 Sobic001G334600--Sobic004G101900 Sobic003G061800 Sobic003G061800 Sobic001G334600--Sobic003G061800 Sobic001G111150 Sobic001G111150 Sobic001G334600--Sobic001G111150 Sobic004G225100 Sobic004G225100 Sobic001G334600--Sobic004G225100 Sobic006G199000 Sobic006G199000 Sobic001G334600--Sobic006G199000 Sobic001G015500 Sobic001G015500 Sobic001G334600--Sobic001G015500 Sobic010G264700 Sobic010G264700 Sobic001G334600--Sobic010G264700
Octagon: transcription factors


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