Gene annotation
Transcriptome id Sobic.008G186200.1
Synonym PMDH1, Sb08g022770
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
lactate/malate dehydrogenase, putative, expressed
UniProt A0A1B6PEI8
Pfam PF00056 PF02866
Panther DB PTHR11540 PTHR11540:SF27
NCBI CDD -
KEGG Orthology K00026; malate dehydrogenase
Gene Ontology GO:0016491; oxidoreductase activity GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor


Orthologs (automatic annotation)
TAIR AT2G22780 : peroxisomal NAD-malate dehydrogenase 1
RAP-DB (Rice) LOC_Os12g43630.1 : lactate/malate dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a025108
Brachypodium KQJ85666 , KQJ85667
Barley HORVU5Hr1G002010.2 , HORVU5Hr1G002010.3 , HORVU5Hr1G002010.1 , HORVU5Hr1G002010.6 , HORVU5Hr1G002010.7 , HORVU5Hr1G002010.4 , HORVU5Hr1G002010.5 , HORVU5Hr1G002010.8
Wheat TraesCS5D02G019700 , TraesCS3A02G234800 , TraesCS5B02G012400 , TraesCS3A02G234800 , TraesCS3A02G234800 , TraesCS5A02G014300 , TraesCS3B02G265000
Populus -


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cDNA sequences
Sobic.008G186200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G364800 COBW domain containing protein, putative, expressed -
2 Sobic.002G189400 AMP-binding enzyme, putative, expressed -
3 Sobic.001G265600 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
4 Sobic.004G237400 cullin, putative, expressed K03869: cullin 3
5 Sobic.004G177300 SPRY-domain containing protein, putative, expressed -
6 Sobic.007G184500 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
7 Sobic.002G262900 farnesyltransferase/geranylgeranyltransferase type-1 subunitalpha, putative, expressed K05955: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
8 Sobic.008G156700 phosphoribulokinase/Uridine kinase family protein, expressed -
9 Sobic.006G271200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed K08342: cysteine protease ATG4
10 Sobic.003G087000 expressed protein -
11 Sobic.005G059600 WD domain, G-beta repeat domain containing protein, expressed -
12 Sobic.008G061100 expressed protein -
13 Sobic.001G321000 oxidoreductase, putative, expressed -
14 Sobic.010G129600 dual specificity protein phosphatase, putative, expressed K04459: DUSP, dual specificity MAP kinase phosphatase
15 Sobic.002G008800 PTEN, putative, expressed K01110: phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN
16 Sobic.010G261600 ubiquitin interaction motif family protein, expressed -
17 Sobic.009G117500 lipase precursor, putative, expressed -
18 Sobic.002G415900 acyl-CoA dehydrogenase family member 10, putative, expressed K00249: ACADM, acyl-CoA dehydrogenase
19 Sobic.001G199100 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
20 Sobic.006G083600 expressed protein K10134: etoposide-induced 2.4 mRNA


Gene co-expression network
sample Sobic008G186200 Sobic008G186200 Sobic002G364800 Sobic002G364800 Sobic008G186200--Sobic002G364800 Sobic002G189400 Sobic002G189400 Sobic008G186200--Sobic002G189400 Sobic001G265600 Sobic001G265600 Sobic008G186200--Sobic001G265600 Sobic004G237400 Sobic004G237400 Sobic008G186200--Sobic004G237400 Sobic004G177300 Sobic004G177300 Sobic008G186200--Sobic004G177300 Sobic007G184500 Sobic007G184500 Sobic008G186200--Sobic007G184500 Sobic002G262900 Sobic002G262900 Sobic008G186200--Sobic002G262900 Sobic008G156700 Sobic008G156700 Sobic008G186200--Sobic008G156700 Sobic006G271200 Sobic006G271200 Sobic008G186200--Sobic006G271200 Sobic001G199100 Sobic001G199100 Sobic002G364800--Sobic001G199100 Sobic002G364800--Sobic008G156700 Sobic002G364800--Sobic008G186200 Sobic006G136400 Sobic006G136400 Sobic002G364800--Sobic006G136400 Sobic009G056200 Sobic009G056200 Sobic002G364800--Sobic009G056200 Sobic003G195000 Sobic003G195000 Sobic002G364800--Sobic003G195000 Sobic006G196300 Sobic006G196300 Sobic002G364800--Sobic006G196300 Sobic007G071900 Sobic007G071900 Sobic002G364800--Sobic007G071900 Sobic002G263600 Sobic002G263600 Sobic002G364800--Sobic002G263600 Sobic010G228500 Sobic010G228500 Sobic002G189400--Sobic010G228500 Sobic004G339100 Sobic004G339100 Sobic002G189400--Sobic004G339100 Sobic006G083600 Sobic006G083600 Sobic002G189400--Sobic006G083600 Sobic009G148300 Sobic009G148300 Sobic002G189400--Sobic009G148300 Sobic007G202600 Sobic007G202600 Sobic002G189400--Sobic007G202600 Sobic004G113400 Sobic004G113400 Sobic002G189400--Sobic004G113400 Sobic004G127700 Sobic004G127700 Sobic002G189400--Sobic004G127700 Sobic008G099800 Sobic008G099800 Sobic002G189400--Sobic008G099800 Sobic002G111600 Sobic002G111600 Sobic002G189400--Sobic002G111600 Sobic003G226200 Sobic003G226200 Sobic001G265600--Sobic003G226200 Sobic002G415900 Sobic002G415900 Sobic001G265600--Sobic002G415900 Sobic001G265600--Sobic008G186200 Sobic010G134400 Sobic010G134400 Sobic001G265600--Sobic010G134400 Sobic002G058500 Sobic002G058500 Sobic001G265600--Sobic002G058500 Sobic009G069000 Sobic009G069000 Sobic001G265600--Sobic009G069000 Sobic003G280300 Sobic003G280300 Sobic001G265600--Sobic003G280300 Sobic005G079900 Sobic005G079900 Sobic001G265600--Sobic005G079900 Sobic009G234800 Sobic009G234800 Sobic001G265600--Sobic009G234800 Sobic002G105200 Sobic002G105200 Sobic004G237400--Sobic002G105200 Sobic009G113000 Sobic009G113000 Sobic004G237400--Sobic009G113000 Sobic003G352200 Sobic003G352200 Sobic004G237400--Sobic003G352200 Sobic002G382600 Sobic002G382600 Sobic004G237400--Sobic002G382600 Sobic006G115600 Sobic006G115600 Sobic004G237400--Sobic006G115600 Sobic006G004500 Sobic006G004500 Sobic004G237400--Sobic006G004500 Sobic004G264400 Sobic004G264400 Sobic004G237400--Sobic004G264400 Sobic010G164000 Sobic010G164000 Sobic004G237400--Sobic010G164000 Sobic001G473600 Sobic001G473600 Sobic004G237400--Sobic001G473600 Sobic002G008800 Sobic002G008800 Sobic004G177300--Sobic002G008800 Sobic003G089000 Sobic003G089000 Sobic004G177300--Sobic003G089000 Sobic004G177300--Sobic002G262900 Sobic004G065000 Sobic004G065000 Sobic004G177300--Sobic004G065000 Sobic010G020300 Sobic010G020300 Sobic004G177300--Sobic010G020300 Sobic010G261600 Sobic010G261600 Sobic004G177300--Sobic010G261600 Sobic005G059600 Sobic005G059600 Sobic004G177300--Sobic005G059600 Sobic009G133500 Sobic009G133500 Sobic004G177300--Sobic009G133500 Sobic004G177300--Sobic002G263600 Sobic001G360200 Sobic001G360200 Sobic007G184500--Sobic001G360200 Sobic001G033500 Sobic001G033500 Sobic007G184500--Sobic001G033500 Sobic007G077400 Sobic007G077400 Sobic007G184500--Sobic007G077400 Sobic006G044600 Sobic006G044600 Sobic007G184500--Sobic006G044600 Sobic009G058500 Sobic009G058500 Sobic007G184500--Sobic009G058500 Sobic006G278700 Sobic006G278700 Sobic007G184500--Sobic006G278700 Sobic004G353000 Sobic004G353000 Sobic007G184500--Sobic004G353000 Sobic004G178200 Sobic004G178200 Sobic007G184500--Sobic004G178200 Sobic010G073100 Sobic010G073100 Sobic007G184500--Sobic010G073100 Sobic002G262900--Sobic002G008800 Sobic004G275700 Sobic004G275700 Sobic002G262900--Sobic004G275700 Sobic002G262900--Sobic010G164000 Sobic002G262900--Sobic006G136400 Sobic004G039600 Sobic004G039600 Sobic002G262900--Sobic004G039600 Sobic010G205800 Sobic010G205800 Sobic002G262900--Sobic010G205800 Sobic002G262900--Sobic010G261600 Sobic003G155900 Sobic003G155900 Sobic002G262900--Sobic003G155900 Sobic001G124200 Sobic001G124200 Sobic002G262900--Sobic001G124200 Sobic007G098200 Sobic007G098200 Sobic008G156700--Sobic007G098200 Sobic008G032600 Sobic008G032600 Sobic008G156700--Sobic008G032600 Sobic008G156700--Sobic002G364800 Sobic004G310500 Sobic004G310500 Sobic008G156700--Sobic004G310500 Sobic009G075800 Sobic009G075800 Sobic008G156700--Sobic009G075800 Sobic008G033500 Sobic008G033500 Sobic008G156700--Sobic008G033500 Sobic008G156700--Sobic006G136400 Sobic008G156700--Sobic002G262900 Sobic002G226900 Sobic002G226900 Sobic008G156700--Sobic002G226900 Sobic001G003000 Sobic001G003000 Sobic006G271200--Sobic001G003000 Sobic006G237900 Sobic006G237900 Sobic006G271200--Sobic006G237900 Sobic009G126900 Sobic009G126900 Sobic006G271200--Sobic009G126900 Sobic010G130200 Sobic010G130200 Sobic006G271200--Sobic010G130200 Sobic001G089800 Sobic001G089800 Sobic006G271200--Sobic001G089800 Sobic010G043400 Sobic010G043400 Sobic006G271200--Sobic010G043400 Sobic004G351300 Sobic004G351300 Sobic006G271200--Sobic004G351300 Sobic001G436900 Sobic001G436900 Sobic006G271200--Sobic001G436900 Sobic010G072800 Sobic010G072800 Sobic006G271200--Sobic010G072800
Octagon: transcription factors


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