Gene annotation
Transcriptome id Sobic.001G321000.1
Synonym Sb01g031160
Functional annotation oxidoreductase, putative, expressed
UniProt C5WUL5
Pfam PF03171 PF14226
Panther DB PTHR10209 PTHR10209:SF214
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT4G16770 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os10g37899.1 : transposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a053629
Brachypodium -
Barley -
Wheat TraesCS1D02G188100 , TraesCS7B02G474000 , TraesCS1A02G188200 , TraesCS1A02G188200 , TraesCS1B02G196000 , TraesCS1B02G196000 , TraesCS7D02G536900
Populus -


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cDNA sequences
Sobic.001G321000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G279100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CW7, putative, expressed -
2 Sobic.004G237400 cullin, putative, expressed K03869: cullin 3
3 Sobic.002G058500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD-linked oxidoreductase protein, putative, expressed K18204: D-2-hydroxyglutarate dehydrogenase
4 Sobic.008G186200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
5 Sobic.003G226200 neutral ceramidase precursor, putative, expressed K12349: neutral ceramidase
6 Sobic.002G189400 AMP-binding enzyme, putative, expressed -
7 Sobic.001G408200 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@CAMK_KIN1/SNF1/Nim1_like_AMPKh.4 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
8 Sobic.002G415900 acyl-CoA dehydrogenase family member 10, putative, expressed K00249: ACADM, acyl-CoA dehydrogenase
9 Sobic.008G012400 2-isopropylmalate synthase B, putative, expressed K01649: leuA, 2-isopropylmalate synthase
10 Sobic.008G061100 expressed protein -
11 Sobic.010G205500 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
12 Sobic.010G228500 rab geranylgeranyl transferase like protein, putative, expressed K14050: geranylgeranyl transferase type-2 subunit alpha
13 Sobic.001G265600 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
14 Sobic.003G100800 acetyl-CoA acetyltransferase, cytosolic, putative, expressed K00626: ACAT, acetyl-CoA C-acetyltransferase
15 Sobic.010G112300 aluminum-activated malate transporter, putative, expressed -
16 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
17 Sobic.007G172400 AAA-type ATPase family protein, putative, expressed K13338: peroxin-1
18 Sobic.009G193300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
19 Sobic.003G428400 beta-galactosidase, putative, expressed K01190: beta-galactosidase
20 Sobic.001G395700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ proteins of unknown function domain containing protein, expressed -


Gene co-expression network
sample Sobic001G321000 Sobic001G321000 Sobic001G279100 Sobic001G279100 Sobic001G321000--Sobic001G279100 Sobic004G237400 Sobic004G237400 Sobic001G321000--Sobic004G237400 Sobic002G058500 Sobic002G058500 Sobic001G321000--Sobic002G058500 Sobic008G186200 Sobic008G186200 Sobic001G321000--Sobic008G186200 Sobic003G226200 Sobic003G226200 Sobic001G321000--Sobic003G226200 Sobic002G189400 Sobic002G189400 Sobic001G321000--Sobic002G189400 Sobic001G408200 Sobic001G408200 Sobic001G321000--Sobic001G408200 Sobic002G415900 Sobic002G415900 Sobic001G321000--Sobic002G415900 Sobic008G012400 Sobic008G012400 Sobic001G321000--Sobic008G012400 Sobic002G382600 Sobic002G382600 Sobic001G279100--Sobic002G382600 Sobic008G061100 Sobic008G061100 Sobic001G279100--Sobic008G061100 Sobic002G314900 Sobic002G314900 Sobic001G279100--Sobic002G314900 Sobic007G119200 Sobic007G119200 Sobic001G279100--Sobic007G119200 Sobic001G517500 Sobic001G517500 Sobic001G279100--Sobic001G517500 Sobic010G129600 Sobic010G129600 Sobic001G279100--Sobic010G129600 Sobic006G115466 Sobic006G115466 Sobic001G279100--Sobic006G115466 Sobic007G046200 Sobic007G046200 Sobic001G279100--Sobic007G046200 Sobic001G436900 Sobic001G436900 Sobic001G279100--Sobic001G436900 Sobic002G105200 Sobic002G105200 Sobic004G237400--Sobic002G105200 Sobic009G113000 Sobic009G113000 Sobic004G237400--Sobic009G113000 Sobic003G352200 Sobic003G352200 Sobic004G237400--Sobic003G352200 Sobic004G237400--Sobic002G382600 Sobic006G115600 Sobic006G115600 Sobic004G237400--Sobic006G115600 Sobic006G004500 Sobic006G004500 Sobic004G237400--Sobic006G004500 Sobic004G264400 Sobic004G264400 Sobic004G237400--Sobic004G264400 Sobic010G164000 Sobic010G164000 Sobic004G237400--Sobic010G164000 Sobic001G473600 Sobic001G473600 Sobic004G237400--Sobic001G473600 Sobic006G139000 Sobic006G139000 Sobic002G058500--Sobic006G139000 Sobic001G227800 Sobic001G227800 Sobic002G058500--Sobic001G227800 Sobic001G395700 Sobic001G395700 Sobic002G058500--Sobic001G395700 Sobic005G019800 Sobic005G019800 Sobic002G058500--Sobic005G019800 Sobic002G215700 Sobic002G215700 Sobic002G058500--Sobic002G215700 Sobic004G101900 Sobic004G101900 Sobic002G058500--Sobic004G101900 Sobic002G058500--Sobic003G226200 Sobic004G124200 Sobic004G124200 Sobic002G058500--Sobic004G124200 Sobic001G280000 Sobic001G280000 Sobic002G058500--Sobic001G280000 Sobic002G364800 Sobic002G364800 Sobic008G186200--Sobic002G364800 Sobic008G186200--Sobic002G189400 Sobic001G265600 Sobic001G265600 Sobic008G186200--Sobic001G265600 Sobic008G186200--Sobic004G237400 Sobic004G177300 Sobic004G177300 Sobic008G186200--Sobic004G177300 Sobic007G184500 Sobic007G184500 Sobic008G186200--Sobic007G184500 Sobic002G262900 Sobic002G262900 Sobic008G186200--Sobic002G262900 Sobic008G156700 Sobic008G156700 Sobic008G186200--Sobic008G156700 Sobic006G271200 Sobic006G271200 Sobic008G186200--Sobic006G271200 Sobic009G234800 Sobic009G234800 Sobic003G226200--Sobic009G234800 Sobic003G226200--Sobic002G058500 Sobic005G079900 Sobic005G079900 Sobic003G226200--Sobic005G079900 Sobic007G041400 Sobic007G041400 Sobic003G226200--Sobic007G041400 Sobic003G226200--Sobic001G265600 Sobic003G226200--Sobic002G415900 Sobic007G068100 Sobic007G068100 Sobic003G226200--Sobic007G068100 Sobic003G226200--Sobic002G215700 Sobic003G226200--Sobic004G101900 Sobic010G228500 Sobic010G228500 Sobic002G189400--Sobic010G228500 Sobic004G339100 Sobic004G339100 Sobic002G189400--Sobic004G339100 Sobic006G083600 Sobic006G083600 Sobic002G189400--Sobic006G083600 Sobic009G148300 Sobic009G148300 Sobic002G189400--Sobic009G148300 Sobic007G202600 Sobic007G202600 Sobic002G189400--Sobic007G202600 Sobic004G113400 Sobic004G113400 Sobic002G189400--Sobic004G113400 Sobic004G127700 Sobic004G127700 Sobic002G189400--Sobic004G127700 Sobic008G099800 Sobic008G099800 Sobic002G189400--Sobic008G099800 Sobic002G111600 Sobic002G111600 Sobic002G189400--Sobic002G111600 Sobic003G303300 Sobic003G303300 Sobic001G408200--Sobic003G303300 Sobic001G408200--Sobic005G079900 Sobic001G474700 Sobic001G474700 Sobic001G408200--Sobic001G474700 Sobic001G397400 Sobic001G397400 Sobic001G408200--Sobic001G397400 Sobic001G156100 Sobic001G156100 Sobic001G408200--Sobic001G156100 Sobic003G005600 Sobic003G005600 Sobic001G408200--Sobic003G005600 Sobic001G408200--Sobic004G101900 Sobic001G224600 Sobic001G224600 Sobic001G408200--Sobic001G224600 Sobic002G304000 Sobic002G304000 Sobic001G408200--Sobic002G304000 Sobic002G415900--Sobic007G068100 Sobic001G474500 Sobic001G474500 Sobic002G415900--Sobic001G474500 Sobic009G057300 Sobic009G057300 Sobic002G415900--Sobic009G057300 Sobic003G388251 Sobic003G388251 Sobic002G415900--Sobic003G388251 Sobic001G111150 Sobic001G111150 Sobic002G415900--Sobic001G111150 Sobic001G322700 Sobic001G322700 Sobic002G415900--Sobic001G322700 Sobic003G200100 Sobic003G200100 Sobic002G415900--Sobic003G200100 Sobic002G415900--Sobic003G226200 Sobic002G415900--Sobic004G124200 Sobic008G159250 Sobic008G159250 Sobic008G012400--Sobic008G159250 Sobic008G012400--Sobic002G058500 Sobic008G012400--Sobic001G321000 Sobic002G165140 Sobic002G165140 Sobic008G012400--Sobic002G165140 Sobic003G100800 Sobic003G100800 Sobic008G012400--Sobic003G100800 Sobic010G205500 Sobic010G205500 Sobic008G012400--Sobic010G205500 Sobic008G012400--Sobic003G200100 Sobic006G226400 Sobic006G226400 Sobic008G012400--Sobic006G226400 Sobic008G012400--Sobic003G388251
Octagon: transcription factors


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