Gene annotation
Transcriptome id Sobic.003G226200.1,Sobic.003G226200.2
Synonym Sb03g028400
Functional annotation neutral ceramidase precursor, putative, expressed
UniProt A0A1B6Q4S3
Pfam PF17048 PF04734
Panther DB PTHR12670 PTHR12670:SF4
NCBI CDD -
KEGG Orthology K12349; neutral ceramidase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G38010 : Neutral/alkaline non-lysosomal ceramidase
RAP-DB (Rice) LOC_Os01g43520.1 : neutral ceramidase precursor, putative, expressed
MaizeGDB (Corn) Zm00025a028363
Brachypodium KQK08806
Barley HORVU5Hr1G002000.9 , HORVU5Hr1G002000.8 , HORVU5Hr1G002000.1 , HORVU5Hr1G002000.3 , HORVU5Hr1G002000.2 , HORVU5Hr1G002000.5 , HORVU5Hr1G002000.7 , HORVU5Hr1G002000.6 , HORVU5Hr1G002000.19 , HORVU5Hr1G002000.18 , HORVU5Hr1G002000.14 , HORVU5Hr1G002000.17 , HORVU5Hr1G002000.16 , HORVU5Hr1G002000.11 , HORVU5Hr1G002000.10 , HORVU5Hr1G002000.13 , HORVU5Hr1G002000.12 , HORVU3Hr1G055870.6 , HORVU3Hr1G055870.4 , HORVU3Hr1G055870.5 , HORVU3Hr1G055870.2 , HORVU3Hr1G055870.3 , HORVU3Hr1G055870.1 , HORVU5Hr1G002000.21 , HORVU5Hr1G002000.22 , HORVU5Hr1G002000.23 , HORVU5Hr1G002000.24
Wheat TraesCS5B02G012600 , TraesCS3B02G255000 , TraesCS3B02G255000 , TraesCS3D02G227900 , TraesCS5A02G014200 , TraesCS3A02G225500 , TraesCS5D02G019600
Populus PNT19462 , PNT19463 , PNT56463 , PNT56462 , PNT56460


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cDNA sequences
Sobic.003G226200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G234800 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
2 Sobic.002G058500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD-linked oxidoreductase protein, putative, expressed K18204: D-2-hydroxyglutarate dehydrogenase
3 Sobic.005G079900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@F-box domain containing protein, expressed -
4 Sobic.007G041400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF1336 domain containing protein, expressed -
5 Sobic.001G265600 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
6 Sobic.002G415900 acyl-CoA dehydrogenase family member 10, putative, expressed K00249: ACADM, acyl-CoA dehydrogenase
7 Sobic.007G068100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
8 Sobic.002G215700 similar to Aldehyde dehydrogenase(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Aldehyde dehydrogenase B4(PubMedID : 26320239)@Zinc finger(C3H4-type Ring finger) family protein(PubMedID : 26320239)@a glutamate S-semialdehyde dehydrogenase(PubMedID : 26320239)@aldehyde dehydrogenase, putative, expressed K14085: aldehyde dehydrogenase family 7 member A1
9 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
10 Sobic.001G395700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ proteins of unknown function domain containing protein, expressed -
11 Sobic.004G124200 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
12 Sobic.006G139000 carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed -
13 Sobic.001G427100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
14 Sobic.002G189400 AMP-binding enzyme, putative, expressed -
15 Sobic.001G227800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
16 Sobic.006G271200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed K08342: cysteine protease ATG4
17 Sobic.010G072800 exportin-7-A, putative, expressed K18460: XPO7, exportin-7
18 Sobic.003G304200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@phospholipase, patatin family, putative, expressed K14674: TAG lipase / steryl ester hydrolase / phospholipase A2 / LPA acyltransferase
19 Sobic.001G375600 transmembrane protein, putative, expressed -
20 Sobic.010G112300 aluminum-activated malate transporter, putative, expressed -


Gene co-expression network
sample Sobic003G226200 Sobic003G226200 Sobic009G234800 Sobic009G234800 Sobic003G226200--Sobic009G234800 Sobic002G058500 Sobic002G058500 Sobic003G226200--Sobic002G058500 Sobic005G079900 Sobic005G079900 Sobic003G226200--Sobic005G079900 Sobic007G041400 Sobic007G041400 Sobic003G226200--Sobic007G041400 Sobic001G265600 Sobic001G265600 Sobic003G226200--Sobic001G265600 Sobic002G415900 Sobic002G415900 Sobic003G226200--Sobic002G415900 Sobic007G068100 Sobic007G068100 Sobic003G226200--Sobic007G068100 Sobic002G215700 Sobic002G215700 Sobic003G226200--Sobic002G215700 Sobic004G101900 Sobic004G101900 Sobic003G226200--Sobic004G101900 Sobic009G234800--Sobic005G079900 Sobic009G234800--Sobic003G226200 Sobic006G119200 Sobic006G119200 Sobic009G234800--Sobic006G119200 Sobic005G231900 Sobic005G231900 Sobic009G234800--Sobic005G231900 Sobic001G488500 Sobic001G488500 Sobic009G234800--Sobic001G488500 Sobic001G512800 Sobic001G512800 Sobic009G234800--Sobic001G512800 Sobic004G246200 Sobic004G246200 Sobic009G234800--Sobic004G246200 Sobic010G016400 Sobic010G016400 Sobic009G234800--Sobic010G016400 Sobic009G234800--Sobic007G041400 Sobic006G139000 Sobic006G139000 Sobic002G058500--Sobic006G139000 Sobic001G227800 Sobic001G227800 Sobic002G058500--Sobic001G227800 Sobic001G395700 Sobic001G395700 Sobic002G058500--Sobic001G395700 Sobic005G019800 Sobic005G019800 Sobic002G058500--Sobic005G019800 Sobic002G058500--Sobic002G215700 Sobic002G058500--Sobic004G101900 Sobic002G058500--Sobic003G226200 Sobic004G124200 Sobic004G124200 Sobic002G058500--Sobic004G124200 Sobic001G280000 Sobic001G280000 Sobic002G058500--Sobic001G280000 Sobic005G079900--Sobic004G101900 Sobic005G079900--Sobic009G234800 Sobic005G079900--Sobic005G231900 Sobic003G303300 Sobic003G303300 Sobic005G079900--Sobic003G303300 Sobic005G079900--Sobic001G488500 Sobic005G079900--Sobic001G512800 Sobic005G079900--Sobic002G215700 Sobic005G079900--Sobic007G068100 Sobic005G079900--Sobic004G246200 Sobic007G041400--Sobic001G488500 Sobic007G041400--Sobic005G079900 Sobic007G041400--Sobic004G101900 Sobic010G107000 Sobic010G107000 Sobic007G041400--Sobic010G107000 Sobic007G041400--Sobic002G215700 Sobic003G329400 Sobic003G329400 Sobic007G041400--Sobic003G329400 Sobic009G211400 Sobic009G211400 Sobic007G041400--Sobic009G211400 Sobic001G427100 Sobic001G427100 Sobic007G041400--Sobic001G427100 Sobic003G005600 Sobic003G005600 Sobic007G041400--Sobic003G005600 Sobic001G265600--Sobic003G226200 Sobic001G265600--Sobic002G415900 Sobic008G186200 Sobic008G186200 Sobic001G265600--Sobic008G186200 Sobic010G134400 Sobic010G134400 Sobic001G265600--Sobic010G134400 Sobic001G265600--Sobic002G058500 Sobic009G069000 Sobic009G069000 Sobic001G265600--Sobic009G069000 Sobic003G280300 Sobic003G280300 Sobic001G265600--Sobic003G280300 Sobic001G265600--Sobic005G079900 Sobic001G265600--Sobic009G234800 Sobic002G415900--Sobic007G068100 Sobic001G474500 Sobic001G474500 Sobic002G415900--Sobic001G474500 Sobic009G057300 Sobic009G057300 Sobic002G415900--Sobic009G057300 Sobic003G388251 Sobic003G388251 Sobic002G415900--Sobic003G388251 Sobic001G111150 Sobic001G111150 Sobic002G415900--Sobic001G111150 Sobic001G322700 Sobic001G322700 Sobic002G415900--Sobic001G322700 Sobic003G200100 Sobic003G200100 Sobic002G415900--Sobic003G200100 Sobic002G415900--Sobic003G226200 Sobic002G415900--Sobic004G124200 Sobic001G325200 Sobic001G325200 Sobic007G068100--Sobic001G325200 Sobic007G068100--Sobic001G474500 Sobic007G068100--Sobic003G388251 Sobic003G148800 Sobic003G148800 Sobic007G068100--Sobic003G148800 Sobic007G068100--Sobic009G057300 Sobic007G068100--Sobic004G101900 Sobic003G428400 Sobic003G428400 Sobic007G068100--Sobic003G428400 Sobic009G226300 Sobic009G226300 Sobic007G068100--Sobic009G226300 Sobic004G321800 Sobic004G321800 Sobic007G068100--Sobic004G321800 Sobic002G215700--Sobic001G227800 Sobic009G054500 Sobic009G054500 Sobic002G215700--Sobic009G054500 Sobic002G215700--Sobic009G226300 Sobic002G215700--Sobic004G101900 Sobic002G304000 Sobic002G304000 Sobic002G215700--Sobic002G304000 Sobic006G100332 Sobic006G100332 Sobic002G215700--Sobic006G100332 Sobic003G138200 Sobic003G138200 Sobic002G215700--Sobic003G138200 Sobic002G215700--Sobic003G148800 Sobic005G018500 Sobic005G018500 Sobic002G215700--Sobic005G018500 Sobic004G101900--Sobic002G304000 Sobic004G101900--Sobic002G215700 Sobic004G101900--Sobic001G325200 Sobic004G101900--Sobic009G226300 Sobic004G101900--Sobic009G054500 Sobic008G062200 Sobic008G062200 Sobic004G101900--Sobic008G062200 Sobic004G101900--Sobic003G148800 Sobic004G101900--Sobic004G124200 Sobic001G015500 Sobic001G015500 Sobic004G101900--Sobic001G015500
Octagon: transcription factors


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