Gene annotation
Transcriptome id Sobic.006G139000.1
Synonym Sb06g021840
Functional annotation carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed
UniProt C5YBU8
Pfam PF00463
Panther DB PTHR21631 PTHR21631:SF21
NCBI CDD KOG1260; Isocitrate lyase
KEGG Orthology -
Gene Ontology GO:0004451; isocitrate lyase activity


Orthologs (automatic annotation)
TAIR AT2G43180 : Phosphoenolpyruvate carboxylase family protein
RAP-DB (Rice) LOC_Os04g42580.1 : carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed
MaizeGDB (Corn) Zm00025a036926 , Zm00025a015832 , Zm00025a008754 , Zm00025a035302 , Zm00025a056542
Brachypodium KQJ82262 , KQJ83440
Barley HORVU2Hr1G087400.1 , HORVU2Hr1G087400.3 , HORVU2Hr1G087400.2
Wheat TraesCS2B02G378300 , TraesCS2B02G378300 , TraesCS2B02G378300 , TraesCS2A02G358900 , TraesCS2D02G357800 , TraesCS2A02G358900
Populus -


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cDNA sequences
Sobic.006G139000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G058500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD-linked oxidoreductase protein, putative, expressed K18204: D-2-hydroxyglutarate dehydrogenase
2 Sobic.001G417600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
3 Sobic.001G280000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSCP46 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
4 Sobic.005G019800 ZF-HD protein dimerisation region containing protein, expressed -
5 Sobic.001G395700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ proteins of unknown function domain containing protein, expressed -
6 Sobic.003G226200 neutral ceramidase precursor, putative, expressed K12349: neutral ceramidase
7 Sobic.005G197100 acyltransferase, putative, expressed K13523: lysophosphatidic acid acyltransferase / lysophosphatidylinositol acyltransferase
8 Sobic.003G304200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@phospholipase, patatin family, putative, expressed K14674: TAG lipase / steryl ester hydrolase / phospholipase A2 / LPA acyltransferase
9 Sobic.009G055600 TKL_IRAK_CrRLK1L-1.10 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
10 Sobic.003G356400 expressed protein -
11 Sobic.009G069000 AGC_AGC_other_NDRh_TRCd.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
12 Sobic.001G082500 cytochrome P450, putative, expressed -
13 Sobic.001G196700 OsProCP3 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed -
14 Sobic.007G194800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@triacylglycerol lipase precursor, putative, expressed K01052: lysosomal acid lipase/cholesteryl ester hydrolase
15 Sobic.006G004500 arginase, putative, expressed K01476: E3.5.3.1, rocF, arginase
16 Sobic.001G227800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
17 Sobic.009G212600 expressed protein K00294: 1-pyrroline-5-carboxylate dehydrogenase
18 Sobic.001G279100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CW7, putative, expressed -
19 Sobic.006G147400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@A NAC transcription factor controlling cell collapse and secondary cell wall composition in the stem(PubMedID : 30309900)@We identified D as a single gene encoding a NAC transcription factor that controls the expression of genes involved in plant PCD (programmed cell death).(PubMedID : 30150370)@"we apply fine-mapping and genome-wide association study (GWAS) to identify a candidate gene underlying D, and use nearly isogenic lines (NILs) to characterize the transcriptional, compositional, and agronomic effects of variation at the D locus."(PubMedID : 31245734)@no apical meristem protein, putative, expressed -
20 Sobic.006G146200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@Os4bglu18 - monolignol beta-glucoside homologue, expressed K05350: beta-glucosidase


Gene co-expression network
sample Sobic006G139000 Sobic006G139000 Sobic002G058500 Sobic002G058500 Sobic006G139000--Sobic002G058500 Sobic001G417600 Sobic001G417600 Sobic006G139000--Sobic001G417600 Sobic001G280000 Sobic001G280000 Sobic006G139000--Sobic001G280000 Sobic005G019800 Sobic005G019800 Sobic006G139000--Sobic005G019800 Sobic001G395700 Sobic001G395700 Sobic006G139000--Sobic001G395700 Sobic003G226200 Sobic003G226200 Sobic006G139000--Sobic003G226200 Sobic005G197100 Sobic005G197100 Sobic006G139000--Sobic005G197100 Sobic003G304200 Sobic003G304200 Sobic006G139000--Sobic003G304200 Sobic009G055600 Sobic009G055600 Sobic006G139000--Sobic009G055600 Sobic002G058500--Sobic006G139000 Sobic001G227800 Sobic001G227800 Sobic002G058500--Sobic001G227800 Sobic002G058500--Sobic001G395700 Sobic002G058500--Sobic005G019800 Sobic002G215700 Sobic002G215700 Sobic002G058500--Sobic002G215700 Sobic004G101900 Sobic004G101900 Sobic002G058500--Sobic004G101900 Sobic002G058500--Sobic003G226200 Sobic004G124200 Sobic004G124200 Sobic002G058500--Sobic004G124200 Sobic002G058500--Sobic001G280000 Sobic010G133700 Sobic010G133700 Sobic001G417600--Sobic010G133700 Sobic001G417600--Sobic006G139000 Sobic001G417600--Sobic001G280000 Sobic003G036700 Sobic003G036700 Sobic001G417600--Sobic003G036700 Sobic001G082500 Sobic001G082500 Sobic001G417600--Sobic001G082500 Sobic009G208500 Sobic009G208500 Sobic001G417600--Sobic009G208500 Sobic006G147400 Sobic006G147400 Sobic001G417600--Sobic006G147400 Sobic007G178100 Sobic007G178100 Sobic001G417600--Sobic007G178100 Sobic007G194800 Sobic007G194800 Sobic001G417600--Sobic007G194800 Sobic001G280000--Sobic006G139000 Sobic001G280000--Sobic001G417600 Sobic001G280000--Sobic002G058500 Sobic001G280000--Sobic001G227800 Sobic001G162700 Sobic001G162700 Sobic001G280000--Sobic001G162700 Sobic001G280000--Sobic005G019800 Sobic010G098100 Sobic010G098100 Sobic001G280000--Sobic010G098100 Sobic001G251900 Sobic001G251900 Sobic001G280000--Sobic001G251900 Sobic003G259200 Sobic003G259200 Sobic001G280000--Sobic003G259200 Sobic003G025900 Sobic003G025900 Sobic005G019800--Sobic003G025900 Sobic005G019800--Sobic002G058500 Sobic005G019800--Sobic006G139000 Sobic005G019800--Sobic001G227800 Sobic005G019800--Sobic001G280000 Sobic003G272600 Sobic003G272600 Sobic005G019800--Sobic003G272600 Sobic005G019800--Sobic001G395700 Sobic003G356400 Sobic003G356400 Sobic005G019800--Sobic003G356400 Sobic005G019800--Sobic002G215700 Sobic001G395700--Sobic002G058500 Sobic003G012300 Sobic003G012300 Sobic001G395700--Sobic003G012300 Sobic001G395700--Sobic002G215700 Sobic001G395700--Sobic006G139000 Sobic001G395700--Sobic001G227800 Sobic002G195000 Sobic002G195000 Sobic001G395700--Sobic002G195000 Sobic001G395700--Sobic004G101900 Sobic005G231900 Sobic005G231900 Sobic001G395700--Sobic005G231900 Sobic001G395700--Sobic003G226200 Sobic009G234800 Sobic009G234800 Sobic003G226200--Sobic009G234800 Sobic003G226200--Sobic002G058500 Sobic005G079900 Sobic005G079900 Sobic003G226200--Sobic005G079900 Sobic007G041400 Sobic007G041400 Sobic003G226200--Sobic007G041400 Sobic001G265600 Sobic001G265600 Sobic003G226200--Sobic001G265600 Sobic002G415900 Sobic002G415900 Sobic003G226200--Sobic002G415900 Sobic007G068100 Sobic007G068100 Sobic003G226200--Sobic007G068100 Sobic003G226200--Sobic002G215700 Sobic003G226200--Sobic004G101900 Sobic009G166600 Sobic009G166600 Sobic005G197100--Sobic009G166600 Sobic009G212600 Sobic009G212600 Sobic005G197100--Sobic009G212600 Sobic004G160700 Sobic004G160700 Sobic005G197100--Sobic004G160700 Sobic002G292900 Sobic002G292900 Sobic005G197100--Sobic002G292900 Sobic001G005600 Sobic001G005600 Sobic005G197100--Sobic001G005600 Sobic003G150900 Sobic003G150900 Sobic005G197100--Sobic003G150900 Sobic002G313900 Sobic002G313900 Sobic005G197100--Sobic002G313900 Sobic008G021000 Sobic008G021000 Sobic005G197100--Sobic008G021000 Sobic006G139100 Sobic006G139100 Sobic005G197100--Sobic006G139100 Sobic007G088100 Sobic007G088100 Sobic003G304200--Sobic007G088100 Sobic008G061100 Sobic008G061100 Sobic003G304200--Sobic008G061100 Sobic001G436900 Sobic001G436900 Sobic003G304200--Sobic001G436900 Sobic003G304200--Sobic002G058500 Sobic001G375600 Sobic001G375600 Sobic003G304200--Sobic001G375600 Sobic003G304200--Sobic001G227800 Sobic001G279100 Sobic001G279100 Sobic003G304200--Sobic001G279100 Sobic006G004500 Sobic006G004500 Sobic003G304200--Sobic006G004500 Sobic003G005600 Sobic003G005600 Sobic003G304200--Sobic003G005600 Sobic001G196700 Sobic001G196700 Sobic009G055600--Sobic001G196700 Sobic009G030400 Sobic009G030400 Sobic009G055600--Sobic009G030400 Sobic009G132600 Sobic009G132600 Sobic009G055600--Sobic009G132600 Sobic008G160500 Sobic008G160500 Sobic009G055600--Sobic008G160500 Sobic009G237700 Sobic009G237700 Sobic009G055600--Sobic009G237700 Sobic002G403200 Sobic002G403200 Sobic009G055600--Sobic002G403200 Sobic010G207400 Sobic010G207400 Sobic009G055600--Sobic010G207400 Sobic009G055600--Sobic006G139000 Sobic010G168500 Sobic010G168500 Sobic009G055600--Sobic010G168500
Octagon: transcription factors


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