Gene annotation
Transcriptome id Sobic.009G055600.1
Synonym Sb09g004680, HERK1
Functional annotation TKL_IRAK_CrRLK1L-1.10 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed
UniProt C5Z0P1
Pfam PF11721 PF07714
Panther DB PTHR27003 PTHR27003:SF89
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT3G46290 : hercules receptor kinase 1
RAP-DB (Rice) LOC_Os05g06990.1 : TKL_IRAK_CrRLK1L-1.10 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed
MaizeGDB (Corn) Zm00025a042935
Brachypodium KQK07346
Barley -
Wheat TraesCS1B02G130300 , TraesCS1D02G110900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G196700 OsProCP3 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed -
2 Sobic.009G030400 eyes absent homolog 4, putative, expressed -
3 Sobic.009G132600 methyl-binding domain protein MBD, putative, expressed -
4 Sobic.008G160500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@tesmin/TSO1-like CXC domain containing protein, expressed -
5 Sobic.009G237700 aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
6 Sobic.002G403200 ankyrin repeat domain containing protein, putative, expressed -
7 Sobic.010G207400 protein kinase domain containing protein, expressed -
8 Sobic.006G139000 carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed -
9 Sobic.010G168500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
10 Sobic.006G132400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CHIT3 - Chitinase family protein precursor, expressed K01183: chitinase
11 Sobic.001G033400 protein kinase domain containing protein, expressed -
12 Sobic.009G055550 - -
13 Sobic.002G078500 LTPL169 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
14 Sobic.002G062500 aldehyde dehydrogenase, putative, expressed K00140: mmsA, iolA, malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase
15 Sobic.005G030100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2-isopropylmalate synthase B, putative, expressed K01649: leuA, 2-isopropylmalate synthase
16 Sobic.001G442200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Ser/Thr protein phosphatase family protein, putative, expressed K14379: tartrate-resistant acid phosphatase type 5
17 Sobic.003G192000 3-5 exonuclease/ nucleic acid binding protein, putative, expressed K18740: EXD1, exonuclease 3'-5' domain-containing protein 1
18 Sobic.010G250900 cadmium/zinc-transporting ATPase, putative, expressed K01534: Zn2+/Cd2+-exporting ATPase
19 Sobic.010G227400 glycosyl hydrolase, family 31, putative, expressed K01187: alpha-glucosidase
20 Sobic.002G252900 DNA repair ATPase-related, putative, expressed -


Gene co-expression network
sample Sobic009G055600 Sobic009G055600 Sobic001G196700 Sobic001G196700 Sobic009G055600--Sobic001G196700 Sobic009G030400 Sobic009G030400 Sobic009G055600--Sobic009G030400 Sobic009G132600 Sobic009G132600 Sobic009G055600--Sobic009G132600 Sobic008G160500 Sobic008G160500 Sobic009G055600--Sobic008G160500 Sobic009G237700 Sobic009G237700 Sobic009G055600--Sobic009G237700 Sobic002G403200 Sobic002G403200 Sobic009G055600--Sobic002G403200 Sobic010G207400 Sobic010G207400 Sobic009G055600--Sobic010G207400 Sobic006G139000 Sobic006G139000 Sobic009G055600--Sobic006G139000 Sobic010G168500 Sobic010G168500 Sobic009G055600--Sobic010G168500 Sobic006G132400 Sobic006G132400 Sobic001G196700--Sobic006G132400 Sobic001G367700 Sobic001G367700 Sobic001G196700--Sobic001G367700 Sobic001G196700--Sobic010G168500 Sobic003G376000 Sobic003G376000 Sobic001G196700--Sobic003G376000 Sobic002G077600 Sobic002G077600 Sobic001G196700--Sobic002G077600 Sobic007G049400 Sobic007G049400 Sobic001G196700--Sobic007G049400 Sobic001G112250 Sobic001G112250 Sobic001G196700--Sobic001G112250 Sobic005G112066 Sobic005G112066 Sobic001G196700--Sobic005G112066 Sobic001G253501 Sobic001G253501 Sobic001G196700--Sobic001G253501 Sobic005G030100 Sobic005G030100 Sobic009G030400--Sobic005G030100 Sobic009G002000 Sobic009G002000 Sobic009G030400--Sobic009G002000 Sobic001G067000 Sobic001G067000 Sobic009G030400--Sobic001G067000 Sobic003G161800 Sobic003G161800 Sobic009G030400--Sobic003G161800 Sobic009G030400--Sobic008G160500 Sobic002G390400 Sobic002G390400 Sobic009G030400--Sobic002G390400 Sobic010G141600 Sobic010G141600 Sobic009G030400--Sobic010G141600 Sobic006G061100 Sobic006G061100 Sobic009G030400--Sobic006G061100 Sobic009G030400--Sobic009G055600 Sobic009G132600--Sobic010G207400 Sobic007G091200 Sobic007G091200 Sobic009G132600--Sobic007G091200 Sobic009G253800 Sobic009G253800 Sobic009G132600--Sobic009G253800 Sobic001G278700 Sobic001G278700 Sobic009G132600--Sobic001G278700 Sobic010G273800 Sobic010G273800 Sobic009G132600--Sobic010G273800 Sobic009G132600--Sobic001G196700 Sobic009G033500 Sobic009G033500 Sobic009G132600--Sobic009G033500 Sobic003G207600 Sobic003G207600 Sobic009G132600--Sobic003G207600 Sobic009G007500 Sobic009G007500 Sobic009G132600--Sobic009G007500 Sobic003G062400 Sobic003G062400 Sobic008G160500--Sobic003G062400 Sobic001G005600 Sobic001G005600 Sobic008G160500--Sobic001G005600 Sobic008G160500--Sobic009G030400 Sobic006G120800 Sobic006G120800 Sobic008G160500--Sobic006G120800 Sobic002G359900 Sobic002G359900 Sobic008G160500--Sobic002G359900 Sobic008G160500--Sobic002G403200 Sobic003G004500 Sobic003G004500 Sobic008G160500--Sobic003G004500 Sobic009G258400 Sobic009G258400 Sobic008G160500--Sobic009G258400 Sobic001G033400 Sobic001G033400 Sobic008G160500--Sobic001G033400 Sobic003G230500 Sobic003G230500 Sobic009G237700--Sobic003G230500 Sobic009G207500 Sobic009G207500 Sobic009G237700--Sobic009G207500 Sobic002G053100 Sobic002G053100 Sobic009G237700--Sobic002G053100 Sobic007G172100 Sobic007G172100 Sobic009G237700--Sobic007G172100 Sobic009G237700--Sobic010G168500 Sobic003G291100 Sobic003G291100 Sobic009G237700--Sobic003G291100 Sobic003G063900 Sobic003G063900 Sobic009G237700--Sobic003G063900 Sobic005G090500 Sobic005G090500 Sobic009G237700--Sobic005G090500 Sobic005G171800 Sobic005G171800 Sobic009G237700--Sobic005G171800 Sobic003G192000 Sobic003G192000 Sobic002G403200--Sobic003G192000 Sobic002G403200--Sobic010G207400 Sobic002G403200--Sobic002G359900 Sobic004G272900 Sobic004G272900 Sobic002G403200--Sobic004G272900 Sobic002G403200--Sobic001G033400 Sobic002G403200--Sobic008G160500 Sobic004G196800 Sobic004G196800 Sobic002G403200--Sobic004G196800 Sobic002G403200--Sobic009G030400 Sobic005G032400 Sobic005G032400 Sobic002G403200--Sobic005G032400 Sobic010G207400--Sobic005G171800 Sobic004G294100 Sobic004G294100 Sobic010G207400--Sobic004G294100 Sobic009G025100 Sobic009G025100 Sobic010G207400--Sobic009G025100 Sobic010G207400--Sobic003G230500 Sobic010G227400 Sobic010G227400 Sobic010G207400--Sobic010G227400 Sobic010G207400--Sobic010G168500 Sobic009G077250 Sobic009G077250 Sobic010G207400--Sobic009G077250 Sobic008G039700 Sobic008G039700 Sobic010G207400--Sobic008G039700 Sobic001G158600 Sobic001G158600 Sobic010G207400--Sobic001G158600 Sobic002G058500 Sobic002G058500 Sobic006G139000--Sobic002G058500 Sobic001G417600 Sobic001G417600 Sobic006G139000--Sobic001G417600 Sobic001G280000 Sobic001G280000 Sobic006G139000--Sobic001G280000 Sobic005G019800 Sobic005G019800 Sobic006G139000--Sobic005G019800 Sobic001G395700 Sobic001G395700 Sobic006G139000--Sobic001G395700 Sobic003G226200 Sobic003G226200 Sobic006G139000--Sobic003G226200 Sobic005G197100 Sobic005G197100 Sobic006G139000--Sobic005G197100 Sobic003G304200 Sobic003G304200 Sobic006G139000--Sobic003G304200 Sobic006G139000--Sobic009G055600 Sobic010G168500--Sobic008G039700 Sobic009G071600 Sobic009G071600 Sobic010G168500--Sobic009G071600 Sobic007G034900 Sobic007G034900 Sobic010G168500--Sobic007G034900 Sobic001G259250 Sobic001G259250 Sobic010G168500--Sobic001G259250 Sobic005G153200 Sobic005G153200 Sobic010G168500--Sobic005G153200 Sobic010G200200 Sobic010G200200 Sobic010G168500--Sobic010G200200 Sobic004G142000 Sobic004G142000 Sobic010G168500--Sobic004G142000 Sobic001G037800 Sobic001G037800 Sobic010G168500--Sobic001G037800 Sobic002G338600 Sobic002G338600 Sobic010G168500--Sobic002G338600
Octagon: transcription factors


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