Gene annotation
Transcriptome id Sobic.003G192000.1
Synonym Sb03g025580
Functional annotation 3-5 exonuclease/ nucleic acid binding protein, putative, expressed
UniProt C5XNP3
Pfam PF00013 PF01612
Panther DB PTHR12124 PTHR12124:SF45
NCBI CDD -
KEGG Orthology K18740; EXD1, exonuclease 3'-5' domain-containing protein 1
Gene Ontology GO:0003723; RNA binding GO:00084083'-5' exonuclease activity GO:0006139nucleobase-containing compound metabolic process GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G25910 : 3\'-5\' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein
RAP-DB (Rice) LOC_Os01g38620.1 : 3-5 exonuclease/ nucleic acid binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a038374 , Zm00025a028424
Brachypodium KQK08359
Barley -
Wheat TraesCS3A02G207200 , TraesCS3A02G207200 , TraesCS3A02G207200 , TraesCS3A02G207200 , TraesCS3D02G208700 , TraesCS3D02G208700 , TraesCS3B02G233800 , TraesCS3B02G233800
Populus -


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cDNA sequences
Sobic.003G192000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G458200 protein transport protein Sec61 subunit alpha, putative, expressed K10956: protein transport protein SEC61 subunit alpha
2 Sobic.003G407900 OsFBX32 - F-box domain containing protein, expressed -
3 Sobic.002G403200 ankyrin repeat domain containing protein, putative, expressed -
4 Sobic.006G261100 UBX domain-containing protein, putative, expressed -
5 Sobic.010G253100 OsRhmbd3 - Putative Rhomboid homologue, expressed K09651: rhomboid domain-containing protein 1
6 Sobic.002G359900 nuclear transport factor 2, putative, expressed -
7 Sobic.009G030400 eyes absent homolog 4, putative, expressed -
8 Sobic.002G276900 transcription initiation factor IIB, putative, expressed K03124: TFIIB, GTF2B, SUA7, transcription initiation factor TFIIB
9 Sobic.010G095700 DCN1-like protein 2, putative, expressed K17822: DCN1-like protein 1/2
10 Sobic.002G093900 mRNA-decapping enzyme, putative, expressed K12611: mRNA-decapping enzyme 1B
11 Sobic.001G033400 protein kinase domain containing protein, expressed -
12 Sobic.009G169100 zinc finger, C3HC4 type domain containing protein, expressed -
13 Sobic.002G044000 WD domain, G-beta repeat domain containing protein, expressed K03246: translation initiation factor 3 subunit I
14 Sobic.004G272900 expressed protein -
15 Sobic.008G160500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@tesmin/TSO1-like CXC domain containing protein, expressed -
16 Sobic.002G385300 helix-loop-helix DNA-binding domain containing protein, expressed -
17 Sobic.006G096300 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
18 Sobic.002G390400 expressed protein -
19 Sobic.009G132600 methyl-binding domain protein MBD, putative, expressed -
20 Sobic.009G055600 TKL_IRAK_CrRLK1L-1.10 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -


Gene co-expression network
sample Sobic003G192000 Sobic003G192000 Sobic001G458200 Sobic001G458200 Sobic003G192000--Sobic001G458200 Sobic003G407900 Sobic003G407900 Sobic003G192000--Sobic003G407900 Sobic002G403200 Sobic002G403200 Sobic003G192000--Sobic002G403200 Sobic006G261100 Sobic006G261100 Sobic003G192000--Sobic006G261100 Sobic010G253100 Sobic010G253100 Sobic003G192000--Sobic010G253100 Sobic002G359900 Sobic002G359900 Sobic003G192000--Sobic002G359900 Sobic009G030400 Sobic009G030400 Sobic003G192000--Sobic009G030400 Sobic002G276900 Sobic002G276900 Sobic003G192000--Sobic002G276900 Sobic010G095700 Sobic010G095700 Sobic003G192000--Sobic010G095700 Sobic001G458200--Sobic003G192000 Sobic003G128300 Sobic003G128300 Sobic001G458200--Sobic003G128300 Sobic001G532100 Sobic001G532100 Sobic001G458200--Sobic001G532100 Sobic001G458200--Sobic002G359900 Sobic002G093900 Sobic002G093900 Sobic001G458200--Sobic002G093900 Sobic008G134900 Sobic008G134900 Sobic001G458200--Sobic008G134900 Sobic003G148900 Sobic003G148900 Sobic001G458200--Sobic003G148900 Sobic002G306600 Sobic002G306600 Sobic001G458200--Sobic002G306600 Sobic002G044000 Sobic002G044000 Sobic001G458200--Sobic002G044000 Sobic003G407900--Sobic003G192000 Sobic002G385300 Sobic002G385300 Sobic003G407900--Sobic002G385300 Sobic003G407900--Sobic001G458200 Sobic003G407900--Sobic002G276900 Sobic001G498400 Sobic001G498400 Sobic003G407900--Sobic001G498400 Sobic003G407900--Sobic006G261100 Sobic003G407900--Sobic002G403200 Sobic006G096300 Sobic006G096300 Sobic003G407900--Sobic006G096300 Sobic010G051500 Sobic010G051500 Sobic003G407900--Sobic010G051500 Sobic002G403200--Sobic003G192000 Sobic010G207400 Sobic010G207400 Sobic002G403200--Sobic010G207400 Sobic002G403200--Sobic002G359900 Sobic004G272900 Sobic004G272900 Sobic002G403200--Sobic004G272900 Sobic001G033400 Sobic001G033400 Sobic002G403200--Sobic001G033400 Sobic008G160500 Sobic008G160500 Sobic002G403200--Sobic008G160500 Sobic004G196800 Sobic004G196800 Sobic002G403200--Sobic004G196800 Sobic002G403200--Sobic009G030400 Sobic005G032400 Sobic005G032400 Sobic002G403200--Sobic005G032400 Sobic001G038100 Sobic001G038100 Sobic006G261100--Sobic001G038100 Sobic006G261100--Sobic010G095700 Sobic006G261100--Sobic002G276900 Sobic007G117100 Sobic007G117100 Sobic006G261100--Sobic007G117100 Sobic009G022100 Sobic009G022100 Sobic006G261100--Sobic009G022100 Sobic006G120800 Sobic006G120800 Sobic006G261100--Sobic006G120800 Sobic001G390500 Sobic001G390500 Sobic006G261100--Sobic001G390500 Sobic009G216000 Sobic009G216000 Sobic006G261100--Sobic009G216000 Sobic003G354100 Sobic003G354100 Sobic006G261100--Sobic003G354100 Sobic010G253100--Sobic002G359900 Sobic010G253100--Sobic001G038100 Sobic010G253100--Sobic006G120800 Sobic010G253100--Sobic006G261100 Sobic010G253100--Sobic001G458200 Sobic002G204000 Sobic002G204000 Sobic010G253100--Sobic002G204000 Sobic010G253100--Sobic002G276900 Sobic010G253100--Sobic002G403200 Sobic010G253100--Sobic003G192000 Sobic002G359900--Sobic010G253100 Sobic003G436500 Sobic003G436500 Sobic002G359900--Sobic003G436500 Sobic002G359900--Sobic006G261100 Sobic002G359900--Sobic006G120800 Sobic003G031200 Sobic003G031200 Sobic002G359900--Sobic003G031200 Sobic002G359900--Sobic001G458200 Sobic002G359900--Sobic002G403200 Sobic002G359900--Sobic001G038100 Sobic002G359900--Sobic002G204000 Sobic005G030100 Sobic005G030100 Sobic009G030400--Sobic005G030100 Sobic009G002000 Sobic009G002000 Sobic009G030400--Sobic009G002000 Sobic001G067000 Sobic001G067000 Sobic009G030400--Sobic001G067000 Sobic003G161800 Sobic003G161800 Sobic009G030400--Sobic003G161800 Sobic009G030400--Sobic008G160500 Sobic002G390400 Sobic002G390400 Sobic009G030400--Sobic002G390400 Sobic010G141600 Sobic010G141600 Sobic009G030400--Sobic010G141600 Sobic006G061100 Sobic006G061100 Sobic009G030400--Sobic006G061100 Sobic009G055600 Sobic009G055600 Sobic009G030400--Sobic009G055600 Sobic002G276900--Sobic006G261100 Sobic006G099800 Sobic006G099800 Sobic002G276900--Sobic006G099800 Sobic009G100300 Sobic009G100300 Sobic002G276900--Sobic009G100300 Sobic003G416600 Sobic003G416600 Sobic002G276900--Sobic003G416600 Sobic002G121000 Sobic002G121000 Sobic002G276900--Sobic002G121000 Sobic009G034400 Sobic009G034400 Sobic002G276900--Sobic009G034400 Sobic001G512900 Sobic001G512900 Sobic002G276900--Sobic001G512900 Sobic002G276900--Sobic010G253100 Sobic002G179500 Sobic002G179500 Sobic002G276900--Sobic002G179500 Sobic007G056500 Sobic007G056500 Sobic010G095700--Sobic007G056500 Sobic001G473600 Sobic001G473600 Sobic010G095700--Sobic001G473600 Sobic010G095700--Sobic006G261100 Sobic010G095700--Sobic001G390500 Sobic002G034600 Sobic002G034600 Sobic010G095700--Sobic002G034600 Sobic001G497900 Sobic001G497900 Sobic010G095700--Sobic001G497900 Sobic007G111100 Sobic007G111100 Sobic010G095700--Sobic007G111100 Sobic003G355000 Sobic003G355000 Sobic010G095700--Sobic003G355000 Sobic001G469800 Sobic001G469800 Sobic010G095700--Sobic001G469800
Octagon: transcription factors


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