Gene annotation
Transcriptome id Sobic.002G276900.1
Synonym Sb02g031020
Functional annotation transcription initiation factor IIB, putative, expressed
UniProt C5X694
Pfam PF08271 PF00382
Panther DB PTHR11618 PTHR11618:SF27
NCBI CDD KOG1597; Transcription initiation factor TFIIB
KEGG Orthology K03124; TFIIB, GTF2B, SUA7, transcription initiation factor TFIIB
Gene Ontology GO:0017025; TBP-class protein binding GO:0008270zinc ion binding GO:0006355regulation of transcription, DNA-templated GO:0006352DNA-templated transcription, initiation


Orthologs (automatic annotation)
TAIR AT3G10330 : Cyclin-like family protein
RAP-DB (Rice) LOC_Os09g36440.1 : transcription initiation factor IIB, putative, expressed
MaizeGDB (Corn) Zm00025a047810 , Zm00025a014449
Brachypodium KQJ91212
Barley HORVU5Hr1G082560.2 , HORVU5Hr1G082560.1 , HORVU5Hr1G082560.6 , HORVU5Hr1G082560.4 , HORVU5Hr1G082560.5
Wheat TraesCS5A02G323500 , TraesCS5B02G324000 , TraesCS5D02G330500
Populus -


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cDNA sequences
Sobic.002G276900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G261100 UBX domain-containing protein, putative, expressed -
2 Sobic.006G099800 signal recognition particle 19 kDa protein, putative, expressed K03105: signal recognition particle subunit SRP19
3 Sobic.009G100300 expressed protein -
4 Sobic.003G416600 mitochondrial carrier protein, putative, expressed K15108: SLC25A19, DNC, solute carrier family 25 (mitochondrial thiamine pyrophosphate transporter), member 19
5 Sobic.002G121000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.009G034400 OsFBX48 - F-box domain containing protein, expressed -
7 Sobic.001G512900 heat shock protein DnaJ, putative, expressed K09537: DnaJ homolog subfamily C member 17
8 Sobic.010G253100 OsRhmbd3 - Putative Rhomboid homologue, expressed K09651: rhomboid domain-containing protein 1
9 Sobic.002G179500 holocarboxylase synthetase, putative, expressed -
10 Sobic.001G390500 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
11 Sobic.004G349800 expressed protein -
12 Sobic.002G359900 nuclear transport factor 2, putative, expressed -
13 Sobic.008G073000 expressed protein -
14 Sobic.001G079100 upstream activation factor subunit spp27, putative, expressed K15223: UAF30, upstream activation factor subunit UAF30
15 Sobic.003G189900 expressed protein -
16 Sobic.001G083600 26S proteasome non-ATPase regulatory subunit 10, putative, expressed K06694: 26S proteasome non-ATPase regulatory subunit 10
17 Sobic.007G038800 expressed protein -
18 Sobic.002G045400 MBTB13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
19 Sobic.010G071200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2
20 Sobic.008G108500 histone deacetylase 6, putative, expressed -


Gene co-expression network
sample Sobic002G276900 Sobic002G276900 Sobic006G261100 Sobic006G261100 Sobic002G276900--Sobic006G261100 Sobic006G099800 Sobic006G099800 Sobic002G276900--Sobic006G099800 Sobic009G100300 Sobic009G100300 Sobic002G276900--Sobic009G100300 Sobic003G416600 Sobic003G416600 Sobic002G276900--Sobic003G416600 Sobic002G121000 Sobic002G121000 Sobic002G276900--Sobic002G121000 Sobic009G034400 Sobic009G034400 Sobic002G276900--Sobic009G034400 Sobic001G512900 Sobic001G512900 Sobic002G276900--Sobic001G512900 Sobic010G253100 Sobic010G253100 Sobic002G276900--Sobic010G253100 Sobic002G179500 Sobic002G179500 Sobic002G276900--Sobic002G179500 Sobic001G038100 Sobic001G038100 Sobic006G261100--Sobic001G038100 Sobic010G095700 Sobic010G095700 Sobic006G261100--Sobic010G095700 Sobic006G261100--Sobic002G276900 Sobic007G117100 Sobic007G117100 Sobic006G261100--Sobic007G117100 Sobic009G022100 Sobic009G022100 Sobic006G261100--Sobic009G022100 Sobic006G120800 Sobic006G120800 Sobic006G261100--Sobic006G120800 Sobic001G390500 Sobic001G390500 Sobic006G261100--Sobic001G390500 Sobic009G216000 Sobic009G216000 Sobic006G261100--Sobic009G216000 Sobic003G354100 Sobic003G354100 Sobic006G261100--Sobic003G354100 Sobic006G099800--Sobic002G276900 Sobic007G038800 Sobic007G038800 Sobic006G099800--Sobic007G038800 Sobic001G148700 Sobic001G148700 Sobic006G099800--Sobic001G148700 Sobic003G227200 Sobic003G227200 Sobic006G099800--Sobic003G227200 Sobic003G434000 Sobic003G434000 Sobic006G099800--Sobic003G434000 Sobic007G192100 Sobic007G192100 Sobic006G099800--Sobic007G192100 Sobic008G108500 Sobic008G108500 Sobic006G099800--Sobic008G108500 Sobic003G031200 Sobic003G031200 Sobic006G099800--Sobic003G031200 Sobic004G028800 Sobic004G028800 Sobic006G099800--Sobic004G028800 Sobic009G100300--Sobic002G276900 Sobic009G100300--Sobic007G038800 Sobic009G100300--Sobic009G034400 Sobic002G359900 Sobic002G359900 Sobic009G100300--Sobic002G359900 Sobic002G068300 Sobic002G068300 Sobic009G100300--Sobic002G068300 Sobic009G036900 Sobic009G036900 Sobic009G100300--Sobic009G036900 Sobic009G100300--Sobic006G099800 Sobic009G100300--Sobic002G121000 Sobic009G100300--Sobic010G253100 Sobic004G122000 Sobic004G122000 Sobic003G416600--Sobic004G122000 Sobic009G232800 Sobic009G232800 Sobic003G416600--Sobic009G232800 Sobic003G416600--Sobic009G036900 Sobic003G416600--Sobic002G276900 Sobic004G248800 Sobic004G248800 Sobic003G416600--Sobic004G248800 Sobic003G403400 Sobic003G403400 Sobic003G416600--Sobic003G403400 Sobic003G416600--Sobic009G034400 Sobic006G062800 Sobic006G062800 Sobic003G416600--Sobic006G062800 Sobic001G367000 Sobic001G367000 Sobic003G416600--Sobic001G367000 Sobic002G121000--Sobic007G038800 Sobic002G121000--Sobic009G034400 Sobic002G121000--Sobic009G036900 Sobic002G121000--Sobic002G276900 Sobic002G121000--Sobic002G068300 Sobic002G121000--Sobic004G122000 Sobic001G230900 Sobic001G230900 Sobic002G121000--Sobic001G230900 Sobic002G121000--Sobic003G416600 Sobic001G424500 Sobic001G424500 Sobic002G121000--Sobic001G424500 Sobic009G034400--Sobic009G036900 Sobic003G024800 Sobic003G024800 Sobic009G034400--Sobic003G024800 Sobic009G034400--Sobic004G122000 Sobic010G071200 Sobic010G071200 Sobic009G034400--Sobic010G071200 Sobic010G228600 Sobic010G228600 Sobic009G034400--Sobic010G228600 Sobic009G034400--Sobic001G424500 Sobic006G257900 Sobic006G257900 Sobic009G034400--Sobic006G257900 Sobic009G034400--Sobic002G179500 Sobic001G309100 Sobic001G309100 Sobic009G034400--Sobic001G309100 Sobic001G512900--Sobic010G071200 Sobic010G055500 Sobic010G055500 Sobic001G512900--Sobic010G055500 Sobic008G142700 Sobic008G142700 Sobic001G512900--Sobic008G142700 Sobic008G174300 Sobic008G174300 Sobic001G512900--Sobic008G174300 Sobic001G083600 Sobic001G083600 Sobic001G512900--Sobic001G083600 Sobic001G512900--Sobic001G390500 Sobic001G149700 Sobic001G149700 Sobic001G512900--Sobic001G149700 Sobic003G127400 Sobic003G127400 Sobic001G512900--Sobic003G127400 Sobic009G246950 Sobic009G246950 Sobic001G512900--Sobic009G246950 Sobic010G253100--Sobic002G359900 Sobic010G253100--Sobic001G038100 Sobic010G253100--Sobic006G120800 Sobic010G253100--Sobic006G261100 Sobic001G458200 Sobic001G458200 Sobic010G253100--Sobic001G458200 Sobic002G204000 Sobic002G204000 Sobic010G253100--Sobic002G204000 Sobic010G253100--Sobic002G276900 Sobic002G403200 Sobic002G403200 Sobic010G253100--Sobic002G403200 Sobic003G192000 Sobic003G192000 Sobic010G253100--Sobic003G192000 Sobic002G179500--Sobic010G071200 Sobic002G179500--Sobic009G034400 Sobic008G073000 Sobic008G073000 Sobic002G179500--Sobic008G073000 Sobic002G179500--Sobic010G055500 Sobic008G101800 Sobic008G101800 Sobic002G179500--Sobic008G101800 Sobic010G174800 Sobic010G174800 Sobic002G179500--Sobic010G174800 Sobic004G231400 Sobic004G231400 Sobic002G179500--Sobic004G231400 Sobic004G263900 Sobic004G263900 Sobic002G179500--Sobic004G263900 Sobic002G179500--Sobic006G257900
Octagon: transcription factors


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