Gene annotation
Transcriptome id Sobic.002G121000.3,Sobic.002G121000.2,Sobic.002G121000.1
Synonym Sb02g010490
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1B6QAQ9 , A0A1B6QAQ8 , A0A1B6QAQ4
Pfam PF07534
Panther DB PTHR23354 PTHR23354:SF74
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G05590 : TLD-domain containing nucleolar protein
RAP-DB (Rice) LOC_Os07g25700.1 : expressed protein
MaizeGDB (Corn) Zm00025a045802
Brachypodium KQK16473 , KQK16472
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.002G121000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G038800 expressed protein -
2 Sobic.009G034400 OsFBX48 - F-box domain containing protein, expressed -
3 Sobic.009G036900 RNA recognition motif containing protein, putative, expressed K12876: RBM8A, RNA-binding protein 8A
4 Sobic.002G276900 transcription initiation factor IIB, putative, expressed K03124: TFIIB, GTF2B, SUA7, transcription initiation factor TFIIB
5 Sobic.002G068300 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
6 Sobic.004G122000 protein of unknown function DUF502 domain containing protein, expressed -
7 Sobic.001G230900 - K07910: Ras-related protein Rab-18
8 Sobic.003G416600 mitochondrial carrier protein, putative, expressed K15108: SLC25A19, DNC, solute carrier family 25 (mitochondrial thiamine pyrophosphate transporter), member 19
9 Sobic.001G424500 mannose-1-phosphate guanyltransferase, putative, expressed K00966: mannose-1-phosphate guanylyltransferase
10 Sobic.002G236200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@transcription factor BIM2, putative, expressed -
11 Sobic.004G152000 RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
12 Sobic.009G237600 transcription factor, putative, expressed K09060: plant G-box-binding factor
13 Sobic.010G228600 LSM domain containing protein, expressed -
14 Sobic.010G238700 dynamin family protein, putative, expressed K12483: EH domain-containing protein 1
15 Sobic.003G101300 expressed protein -
16 Sobic.003G189700 thioredoxin, putative, expressed -
17 Sobic.009G100300 expressed protein -
18 Sobic.006G239300 thiamine-repressible mitochondrial transport protein THI74, putative, expressed K15289: solute carrier family 35, member F5
19 Sobic.001G512900 heat shock protein DnaJ, putative, expressed K09537: DnaJ homolog subfamily C member 17
20 Sobic.010G071200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2


Gene co-expression network
sample Sobic002G121000 Sobic002G121000 Sobic007G038800 Sobic007G038800 Sobic002G121000--Sobic007G038800 Sobic009G034400 Sobic009G034400 Sobic002G121000--Sobic009G034400 Sobic009G036900 Sobic009G036900 Sobic002G121000--Sobic009G036900 Sobic002G276900 Sobic002G276900 Sobic002G121000--Sobic002G276900 Sobic002G068300 Sobic002G068300 Sobic002G121000--Sobic002G068300 Sobic004G122000 Sobic004G122000 Sobic002G121000--Sobic004G122000 Sobic001G230900 Sobic001G230900 Sobic002G121000--Sobic001G230900 Sobic003G416600 Sobic003G416600 Sobic002G121000--Sobic003G416600 Sobic001G424500 Sobic001G424500 Sobic002G121000--Sobic001G424500 Sobic007G038800--Sobic009G036900 Sobic007G038800--Sobic002G068300 Sobic003G189900 Sobic003G189900 Sobic007G038800--Sobic003G189900 Sobic007G192100 Sobic007G192100 Sobic007G038800--Sobic007G192100 Sobic007G038800--Sobic009G034400 Sobic006G099800 Sobic006G099800 Sobic007G038800--Sobic006G099800 Sobic009G252800 Sobic009G252800 Sobic007G038800--Sobic009G252800 Sobic008G108500 Sobic008G108500 Sobic007G038800--Sobic008G108500 Sobic001G126200 Sobic001G126200 Sobic007G038800--Sobic001G126200 Sobic009G034400--Sobic009G036900 Sobic003G024800 Sobic003G024800 Sobic009G034400--Sobic003G024800 Sobic009G034400--Sobic004G122000 Sobic010G071200 Sobic010G071200 Sobic009G034400--Sobic010G071200 Sobic010G228600 Sobic010G228600 Sobic009G034400--Sobic010G228600 Sobic009G034400--Sobic001G424500 Sobic006G257900 Sobic006G257900 Sobic009G034400--Sobic006G257900 Sobic002G179500 Sobic002G179500 Sobic009G034400--Sobic002G179500 Sobic001G309100 Sobic001G309100 Sobic009G034400--Sobic001G309100 Sobic009G036900--Sobic002G068300 Sobic009G036900--Sobic009G034400 Sobic006G256500 Sobic006G256500 Sobic009G036900--Sobic006G256500 Sobic009G036900--Sobic003G024800 Sobic009G036900--Sobic010G228600 Sobic010G039800 Sobic010G039800 Sobic009G036900--Sobic010G039800 Sobic001G529000 Sobic001G529000 Sobic009G036900--Sobic001G529000 Sobic009G036900--Sobic010G071200 Sobic009G036900--Sobic001G424500 Sobic006G261100 Sobic006G261100 Sobic002G276900--Sobic006G261100 Sobic002G276900--Sobic006G099800 Sobic009G100300 Sobic009G100300 Sobic002G276900--Sobic009G100300 Sobic002G276900--Sobic003G416600 Sobic002G276900--Sobic002G121000 Sobic002G276900--Sobic009G034400 Sobic001G512900 Sobic001G512900 Sobic002G276900--Sobic001G512900 Sobic010G253100 Sobic010G253100 Sobic002G276900--Sobic010G253100 Sobic002G276900--Sobic002G179500 Sobic002G068300--Sobic009G036900 Sobic002G068300--Sobic010G228600 Sobic009G016201 Sobic009G016201 Sobic002G068300--Sobic009G016201 Sobic002G068300--Sobic006G256500 Sobic010G144400 Sobic010G144400 Sobic002G068300--Sobic010G144400 Sobic003G249800 Sobic003G249800 Sobic002G068300--Sobic003G249800 Sobic002G282400 Sobic002G282400 Sobic002G068300--Sobic002G282400 Sobic001G389400 Sobic001G389400 Sobic002G068300--Sobic001G389400 Sobic002G205300 Sobic002G205300 Sobic002G068300--Sobic002G205300 Sobic004G122000--Sobic009G034400 Sobic004G048700 Sobic004G048700 Sobic004G122000--Sobic004G048700 Sobic004G122000--Sobic009G036900 Sobic002G176400 Sobic002G176400 Sobic004G122000--Sobic002G176400 Sobic004G122000--Sobic003G416600 Sobic001G036700 Sobic001G036700 Sobic004G122000--Sobic001G036700 Sobic004G122000--Sobic008G108500 Sobic004G122000--Sobic007G192100 Sobic001G285300 Sobic001G285300 Sobic004G122000--Sobic001G285300 Sobic010G238700 Sobic010G238700 Sobic001G230900--Sobic010G238700 Sobic001G230900--Sobic009G036900 Sobic001G230900--Sobic010G144400 Sobic001G230900--Sobic002G068300 Sobic001G230900--Sobic003G024800 Sobic008G132800 Sobic008G132800 Sobic001G230900--Sobic008G132800 Sobic001G230900--Sobic010G228600 Sobic001G090000 Sobic001G090000 Sobic001G230900--Sobic001G090000 Sobic001G040300 Sobic001G040300 Sobic001G230900--Sobic001G040300 Sobic003G416600--Sobic004G122000 Sobic009G232800 Sobic009G232800 Sobic003G416600--Sobic009G232800 Sobic003G416600--Sobic009G036900 Sobic003G416600--Sobic002G276900 Sobic004G248800 Sobic004G248800 Sobic003G416600--Sobic004G248800 Sobic003G403400 Sobic003G403400 Sobic003G416600--Sobic003G403400 Sobic003G416600--Sobic009G034400 Sobic006G062800 Sobic006G062800 Sobic003G416600--Sobic006G062800 Sobic001G367000 Sobic001G367000 Sobic003G416600--Sobic001G367000 Sobic001G424500--Sobic009G036900 Sobic001G424500--Sobic009G034400 Sobic001G127400 Sobic001G127400 Sobic001G424500--Sobic001G127400 Sobic003G101300 Sobic003G101300 Sobic001G424500--Sobic003G101300 Sobic001G424500--Sobic003G024800 Sobic001G424500--Sobic007G038800 Sobic001G424500--Sobic004G122000 Sobic001G424500--Sobic002G068300 Sobic001G424500--Sobic002G121000
Octagon: transcription factors


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