Gene annotation
Transcriptome id Sobic.002G236200.6,Sobic.002G236200.7,Sobic.002G236200.3,Sobic.002G236200.8,Sobic.002G236200.5,Sobic.002G236200.2
Synonym BIM1, Sb02g027460
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
transcription factor BIM2, putative, expressed
UniProt A0A1B6QD41 , A0A1B6QD59 , A0A1B6QD65 , A0A1W0W5N3
Pfam PF00010
Panther DB PTHR12565 PTHR12565:SF96 PTHR12565 PTHR12565:SF153 PTHR12565:SF96 PTHR12565
NCBI CDD KOG2483; Upstream transcription factor 2/L-myc-2 protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G08130 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein,BES1-interacting Myc-like protein 2
RAP-DB (Rice) LOC_Os09g29930.2,LOC_Os09g29930.1 : transcription factor BIM2, putative, expressed
MaizeGDB (Corn) Zm00025a014145 , Zm00025a047367
Brachypodium KQJ90635
Barley HORVU5Hr1G070800.23 , HORVU5Hr1G070800.21 , HORVU5Hr1G070800.20 , HORVU5Hr1G070800.27 , HORVU5Hr1G070800.26 , HORVU5Hr1G070800.25 , HORVU5Hr1G070800.24 , HORVU5Hr1G070800.28 , HORVU5Hr1G070800.10 , HORVU5Hr1G070800.16 , HORVU5Hr1G070800.17 , HORVU5Hr1G070800.1 , HORVU5Hr1G070800.2 , HORVU5Hr1G070800.3 , HORVU5Hr1G070800.4 , HORVU5Hr1G070800.5 , HORVU5Hr1G070800.6 , HORVU5Hr1G070800.7 , HORVU5Hr1G070800.8 , HORVU5Hr1G070800.9 , HORVU5Hr1G070800.18 , HORVU5Hr1G070800.19 , HORVU5Hr1G070800.12 , HORVU5Hr1G070800.11 , HORVU5Hr1G070800.15
Wheat -
Populus -


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cDNA sequences
Sobic.002G236200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G238700 dynamin family protein, putative, expressed K12483: EH domain-containing protein 1
2 Sobic.002G121000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.001G230900 - K07910: Ras-related protein Rab-18
4 Sobic.009G036900 RNA recognition motif containing protein, putative, expressed K12876: RBM8A, RNA-binding protein 8A
5 Sobic.009G157900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
6 Sobic.002G068300 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
7 Sobic.003G189700 thioredoxin, putative, expressed -
8 Sobic.009G034400 OsFBX48 - F-box domain containing protein, expressed -
9 Sobic.010G144400 glycosyltransferase, putative, expressed -
10 Sobic.004G203100 SNF7 domain containing protein, putative, expressed K12195: CHMP6, charged multivesicular body protein 6
11 Sobic.007G223300 transcription factor BIM2, putative, expressed -
12 Sobic.007G150000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
13 Sobic.006G222400 RNA recognition motif containing protein, putative, expressed -
14 Sobic.004G166500 N-carbamoylputrescine amidohydrolase(PubMedID : 27325899)@Up-regulated by silicon application under drought stress(PubMedID : 24813726)@N-carbamoylputrescine amidase, putative, expressed K12251: N-carbamoylputrescine amidase
15 Sobic.010G017000 RNA recognition motif containing protein, putative, expressed -
16 Sobic.010G228600 LSM domain containing protein, expressed -
17 Sobic.007G038800 expressed protein -
18 Sobic.009G237600 transcription factor, putative, expressed K09060: plant G-box-binding factor
19 Sobic.003G416600 mitochondrial carrier protein, putative, expressed K15108: SLC25A19, DNC, solute carrier family 25 (mitochondrial thiamine pyrophosphate transporter), member 19
20 Sobic.003G024800 CGMC_GSK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2


Gene co-expression network
sample Sobic002G236200 Sobic002G236200 Sobic010G238700 Sobic010G238700 Sobic002G236200--Sobic010G238700 Sobic002G121000 Sobic002G121000 Sobic002G236200--Sobic002G121000 Sobic001G230900 Sobic001G230900 Sobic002G236200--Sobic001G230900 Sobic009G036900 Sobic009G036900 Sobic002G236200--Sobic009G036900 Sobic009G157900 Sobic009G157900 Sobic002G236200--Sobic009G157900 Sobic002G068300 Sobic002G068300 Sobic002G236200--Sobic002G068300 Sobic003G189700 Sobic003G189700 Sobic002G236200--Sobic003G189700 Sobic009G034400 Sobic009G034400 Sobic002G236200--Sobic009G034400 Sobic010G144400 Sobic010G144400 Sobic002G236200--Sobic010G144400 Sobic006G222400 Sobic006G222400 Sobic010G238700--Sobic006G222400 Sobic001G529000 Sobic001G529000 Sobic010G238700--Sobic001G529000 Sobic010G238700--Sobic009G036900 Sobic001G126200 Sobic001G126200 Sobic010G238700--Sobic001G126200 Sobic003G382900 Sobic003G382900 Sobic010G238700--Sobic003G382900 Sobic004G203100 Sobic004G203100 Sobic010G238700--Sobic004G203100 Sobic003G007500 Sobic003G007500 Sobic010G238700--Sobic003G007500 Sobic008G132800 Sobic008G132800 Sobic010G238700--Sobic008G132800 Sobic001G010700 Sobic001G010700 Sobic010G238700--Sobic001G010700 Sobic007G038800 Sobic007G038800 Sobic002G121000--Sobic007G038800 Sobic002G121000--Sobic009G034400 Sobic002G121000--Sobic009G036900 Sobic002G276900 Sobic002G276900 Sobic002G121000--Sobic002G276900 Sobic002G121000--Sobic002G068300 Sobic004G122000 Sobic004G122000 Sobic002G121000--Sobic004G122000 Sobic002G121000--Sobic001G230900 Sobic003G416600 Sobic003G416600 Sobic002G121000--Sobic003G416600 Sobic001G424500 Sobic001G424500 Sobic002G121000--Sobic001G424500 Sobic001G230900--Sobic010G238700 Sobic001G230900--Sobic009G036900 Sobic001G230900--Sobic010G144400 Sobic001G230900--Sobic002G068300 Sobic003G024800 Sobic003G024800 Sobic001G230900--Sobic003G024800 Sobic001G230900--Sobic008G132800 Sobic010G228600 Sobic010G228600 Sobic001G230900--Sobic010G228600 Sobic001G090000 Sobic001G090000 Sobic001G230900--Sobic001G090000 Sobic001G040300 Sobic001G040300 Sobic001G230900--Sobic001G040300 Sobic009G036900--Sobic002G068300 Sobic009G036900--Sobic009G034400 Sobic006G256500 Sobic006G256500 Sobic009G036900--Sobic006G256500 Sobic009G036900--Sobic003G024800 Sobic009G036900--Sobic010G228600 Sobic010G039800 Sobic010G039800 Sobic009G036900--Sobic010G039800 Sobic009G036900--Sobic001G529000 Sobic010G071200 Sobic010G071200 Sobic009G036900--Sobic010G071200 Sobic009G036900--Sobic001G424500 Sobic009G157900--Sobic004G203100 Sobic009G157900--Sobic010G144400 Sobic009G237600 Sobic009G237600 Sobic009G157900--Sobic009G237600 Sobic009G157900--Sobic001G230900 Sobic009G157900--Sobic002G236200 Sobic001G478300 Sobic001G478300 Sobic009G157900--Sobic001G478300 Sobic001G427800 Sobic001G427800 Sobic009G157900--Sobic001G427800 Sobic009G157900--Sobic010G238700 Sobic010G042900 Sobic010G042900 Sobic009G157900--Sobic010G042900 Sobic002G068300--Sobic009G036900 Sobic002G068300--Sobic010G228600 Sobic009G016201 Sobic009G016201 Sobic002G068300--Sobic009G016201 Sobic002G068300--Sobic006G256500 Sobic002G068300--Sobic010G144400 Sobic003G249800 Sobic003G249800 Sobic002G068300--Sobic003G249800 Sobic002G282400 Sobic002G282400 Sobic002G068300--Sobic002G282400 Sobic001G389400 Sobic001G389400 Sobic002G068300--Sobic001G389400 Sobic002G205300 Sobic002G205300 Sobic002G068300--Sobic002G205300 Sobic010G017000 Sobic010G017000 Sobic003G189700--Sobic010G017000 Sobic004G083000 Sobic004G083000 Sobic003G189700--Sobic004G083000 Sobic009G160200 Sobic009G160200 Sobic003G189700--Sobic009G160200 Sobic006G217700 Sobic006G217700 Sobic003G189700--Sobic006G217700 Sobic003G189700--Sobic002G236200 Sobic002G395600 Sobic002G395600 Sobic003G189700--Sobic002G395600 Sobic003G189700--Sobic002G121000 Sobic003G038600 Sobic003G038600 Sobic003G189700--Sobic003G038600 Sobic003G189700--Sobic010G238700 Sobic009G034400--Sobic009G036900 Sobic009G034400--Sobic003G024800 Sobic009G034400--Sobic004G122000 Sobic009G034400--Sobic010G071200 Sobic009G034400--Sobic010G228600 Sobic009G034400--Sobic001G424500 Sobic006G257900 Sobic006G257900 Sobic009G034400--Sobic006G257900 Sobic002G179500 Sobic002G179500 Sobic009G034400--Sobic002G179500 Sobic001G309100 Sobic001G309100 Sobic009G034400--Sobic001G309100 Sobic010G144400--Sobic002G068300 Sobic001G056700 Sobic001G056700 Sobic010G144400--Sobic001G056700 Sobic010G144400--Sobic010G228600 Sobic004G172700 Sobic004G172700 Sobic010G144400--Sobic004G172700 Sobic010G144400--Sobic001G090000 Sobic010G144400--Sobic009G016201 Sobic002G258100 Sobic002G258100 Sobic010G144400--Sobic002G258100 Sobic001G471900 Sobic001G471900 Sobic010G144400--Sobic001G471900 Sobic001G253600 Sobic001G253600 Sobic010G144400--Sobic001G253600
Octagon: transcription factors


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